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Aliases for ACCSL Gene

Aliases for ACCSL Gene

  • 1-Aminocyclopropane-1-Carboxylate Synthase Homolog (Arabidopsis)(Non-Functional)-Like 2 3
  • ACC Synthase-Like Protein 2 4

External Ids for ACCSL Gene

Summaries for ACCSL Gene

GeneCards Summary for ACCSL Gene

ACCSL (1-Aminocyclopropane-1-Carboxylate Synthase Homolog (Arabidopsis)(Non-Functional)-Like) is a Protein Coding gene. GO annotations related to this gene include pyridoxal phosphate binding. An important paralog of this gene is ACCS.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ACCSL Gene

Genomics for ACCSL Gene

Genomic Location for ACCSL Gene

Start:
44,047,981 bp from pter
End:
44,059,977 bp from pter
Size:
11,997 bases
Orientation:
Plus strand

Genomic View for ACCSL Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ACCSL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACCSL Gene

Regulatory Elements for ACCSL Gene

Proteins for ACCSL Gene

  • Protein details for ACCSL Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q4AC99-1A1L2_HUMAN
    Recommended name:
    Probable inactive 1-aminocyclopropane-1-carboxylate synthase-like protein 2
    Protein Accession:
    Q4AC99
    Secondary Accessions:

    Protein attributes for ACCSL Gene

    Size:
    568 amino acids
    Molecular mass:
    65249 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ACCSL Gene

Proteomics data for ACCSL Gene at MOPED

Post-translational modifications for ACCSL Gene

No Post-translational modifications

Other Protein References for ACCSL Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ACCSL Gene

Domains for ACCSL Gene

UniProtKB/Swiss-Prot:

1A1L2_HUMAN
Family:
  • Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.:
    • Q4AC99
genes like me logo Genes that share domains with ACCSL: view

No data available for Gene Families for ACCSL Gene

Function for ACCSL Gene

Gene Ontology (GO) - Molecular Function for ACCSL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003824 catalytic activity IEA --
GO:0030170 pyridoxal phosphate binding IEA --
genes like me logo Genes that share ontologies with ACCSL: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ACCSL Gene

Localization for ACCSL Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ACCSL Gene COMPARTMENTS Subcellular localization image for ACCSL gene
Compartment Confidence
cytosol 2
endoplasmic reticulum 1
mitochondrion 1
nucleus 1
plasma membrane 1

No data available for Gene Ontology (GO) - Cellular Components for ACCSL Gene

Pathways for ACCSL Gene

SuperPathways for ACCSL Gene

No Data Available

Interacting Proteins for ACCSL Gene

Gene Ontology (GO) - Biological Process for ACCSL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0009058 biosynthetic process IEA --
genes like me logo Genes that share ontologies with ACCSL: view

No data available for Pathways by source for ACCSL Gene

Transcripts for ACCSL Gene

mRNA/cDNA for ACCSL Gene

(2) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ACCSL Gene

1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)-like:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ACCSL Gene

No ASD Table

Relevant External Links for ACCSL Gene

GeneLoc Exon Structure for
ACCSL
ECgene alternative splicing isoforms for
ACCSL

Expression for ACCSL Gene

mRNA expression in normal human tissues for ACCSL Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for ACCSL Gene

This gene is overexpressed in Testis (13.0).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for ACCSL Gene

SOURCE GeneReport for Unigene cluster for ACCSL Gene Hs.558851

genes like me logo Genes that share expressions with ACCSL: view

Orthologs for ACCSL Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for ACCSL Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ACCSL 36
  • 99.18 (n)
  • 98.06 (a)
ACCSL 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ACCSL 36
  • 79.2 (n)
  • 67.63 (a)
ACCSL 37
  • 63 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Accsl 36
  • 70.86 (n)
  • 59.24 (a)
Accsl 16
Accsl 37
  • 54 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ACCSL 37
  • 33 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ACCSL 37
  • 60 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Accsl 36
  • 70.71 (n)
  • 58.11 (a)
chicken
(Gallus gallus)
Aves -- 37
  • 46 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 49 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii accs 37
  • 24 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea T04F3.1 37
  • 4 (a)
OneToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons ACS2 36
  • 45.59 (n)
  • 33.33 (a)
rice
(Oryza sativa)
Liliopsida Os04g0578000 36
  • 46.25 (n)
  • 31.72 (a)
Species with no ortholog for ACCSL:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for ACCSL Gene

ENSEMBL:
Gene Tree for ACCSL (if available)
TreeFam:
Gene Tree for ACCSL (if available)

Paralogs for ACCSL Gene

Paralogs for ACCSL Gene

Selected SIMAP similar genes for ACCSL Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for ACCSL Gene

genes like me logo Genes that share paralogs with ACCSL: view

Variants for ACCSL Gene

Sequence variations from dbSNP and Humsavar for ACCSL Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs178501 -- 44,060,166(+) TTATC(A/G)GGGTT downstream-variant-500B
rs2015643 -- 44,049,146(+) TGGGC(A/G)TGGTG intron-variant
rs2023751 -- 44,047,645(+) TGGTG(A/T)TTGTT upstream-variant-2KB
rs2074051 - 44,058,660(+) GGTTC(C/T)GCCTC missense, reference
rs3094397 -- 44,046,972(+) TAATC(A/G)TGCCA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ACCSL Gene

Variant ID Type Subtype PubMed ID
nsv510251 CNV Loss 20534489

Relevant External Links for ACCSL Gene

HapMap Linkage Disequilibrium report
ACCSL
Human Gene Mutation Database (HGMD)
ACCSL

Disorders for ACCSL Gene

No disorders were found for ACCSL Gene.

No data available for UniProtKB/Swiss-Prot for ACCSL Gene

Publications for ACCSL Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor T.D. … Sakaki Y. (Nature 2006) 4

Products for ACCSL Gene

Sources for ACCSL Gene

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