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Aliases & Descriptions for ACAT2
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ACTL 3 EC 2.3.1.9 3 OTTHUMP00000017527 2
Descriptions Acetyl-CoA transferase-like protein 3 Cytosolic acetoacetyl-CoA thiolase 2 , 3 acetoacetyl Coenzyme A thiolase 2 acetyl-Coenzyme A acetyltransferase 2 2 acetyl-Coenzyme A acetyltransferase 2 (acetoacetyl Coenzyme A thiolase) 1
Search outside databases for aliases for ACAT2 genePrevious GC identifers: GC06P159622 GC06P160056 GC06P160015 GC06P160092
Summaries for ACAT2 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for ACAT2 : The product of this gene is an enzyme involved in lipid metabolism, and it encodes cytosolicacetoacetyl-CoA thiolase. This gene shows complementary overlapping with the 3-prime region of theTCP1 gene in both mouse and human. These genes are encoded on opposite strands of DNA, as well asin opposite transcriptional orientation. [provided by RefSeq]
Genomic Location for ACAT2
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the ACAT2 gene Entrez Gene cytogenetic band: 6q25.3 Ensembl cytogenetic band: 6q25.3 HGNC cytogenetic band: 6q25.3-q26 ACAT2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure
GeneLoc location for GC06P160153:
(about GC identifiers )
Start:
160,102,979 bp from pter
End:
160,120,077 bp from pter
Size:
17,099 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000006.10 NT_007422.13 Proteins for ACAT2
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: THIC_HUMAN, Q9BWD1 (See
protein sequence )Recommended Name: Acetyl-CoA acetyltransferase, cytosolic Size : 397 amino acids; 41351 Da
Subunit : Homotetramer
Subcellular location : Cytoplasm
PDB structure from and Proteopedia : 1WL4 (3D)
 1WL5 (3D)
 
Secondary accessions : Q16146 Q5TCL7 Q8TDM4
REFSEQ proteins: NP_005882.2 ENSEMBL proteins: ENSP00000356015 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 1 Gene Ontology (GO) cellular component term (links to tree view) :
About this table Antibodies for ACAT2: Assays for ACAT2:
Protein
Domains/ Families for ACAT2(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q9BWD1 ProtoNet protein and cluster: Q9BWD1
1 Blocks protein family : IPB002155 Thiolase UniProtKB/Swiss-Prot: THIC_HUMAN, Q9BWD1 Similarity : Belongs to the thiolase family
Gene Function for ACAT2
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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siRNAs from
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005891 Applied Biosystems Silencer ® siRNAs for ACAT2 Sigma-Aldrich siRNA and siRNA Panels for ACAT2 Sigma-Aldrich shRNA for ACAT2 Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005891                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005891                                  untagged cDNA clone in CMV expression vector: NM_005891  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005891 UniProtKB/Swiss-Prot: THIC_HUMAN, Q9BWD1 Catalytic activity : 2 acetyl-CoA = CoA + acetoacetyl-CoAEnzyme Number (IUBMB): EC 2.3.1.9
Genatlas biochemistry entry for ACAT2 :acetoacetyl-CoA thiolase 2,cytosolic,overlapping in opposite orientation,the 3' region of t complex1 (TCP1) 4 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for ACAT2
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/8 Sigma-Aldrich "Your Favorite Gene" Pathways for ACAT2 (Your Favorite Gene powered by Ingenuity) (see all 8
) Gene Network CentralTM Interacting Genes and Proteins Network for ACAT2 5/36 Interacting proteins for ACAT2 (ENSP00000356015 3 Q9BWD1 1 ) via UniProtKB, MINT, and/or STRING (see all 36
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for ACAT2 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for ACAT2
Compounds for ACAT2 available from Tocris Bioscience Compound Action
CAS
number CI 976 Acyl-CoA:cholesterol acyltransferase (ACAT) inhibitor [114289-47-3] VULM 1457 Acyl-CoA: cholesterol acyltransferase (ACAT) inhibitor [228544-65-8]
About this table 4 Novoseek chemical compound relationships for ACAT2 gene
About this table 1 PharmGKB drug compound relationship for ACAT2 gene
Drug compound
PharmGKB Relations
PubMed IDs for articles supporting these relationships
clozapine PD  15121641
About this table
Transcripts for ACAT2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
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shRNA from
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OriGene ,
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005891 Sigma-Aldrich siRNA and siRNA Panels for ACAT2 Sigma-Aldrich shRNA for ACAT2 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_005891
REFSEQ mRNAs for ACAT2 gene: NM_005891.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005891
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005891                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005891                                  untagged cDNA clone in CMV expression vector: NM_005891  
Additional cDNA sequence: AB208993.1 AF356877.1 AK225089.1 AK225244.1 AK291080.1 AK294273.1 BC000408.2 CR590182.1 CR592880.1 CR602774.1 CR603383.1 CR605843.1 CR616356.1 CR617627.1 S70154.1
24/34 DOTS entries (see all 34
): DT.99989299 DT.121326816 DT.100828792 DT.100759125 DT.87079575 DT.100884457 DT.86852813 DT.121326761 DT.91782029 DT.75133091 DT.100764164 DT.100884461 DT.100884486 DT.91782027 DT.119861 DT.121326756 DT.121326882 DT.121326906 DT.91782015 DT.100031509 DT.100031512 DT.102839912 DT.121326956 DT.121327003
24/438 AceView cDNA sequences (see all 438
):BM549699 BQ648344 BF128856 BQ718511 BU149746 AA341050 BQ050667 BF795373 BI756309 CR602774 BQ677567 BQ050939 BQ684278 CB109303 D20985 BQ680061 F06359 CR592880 BQ676524 BM760441 BM905050 CR605843 BE796920 BE794798
highest scoring ESTs for ACAT2 :AA262195 AK055001 BE748830 BF306004 BG108319 BG163370 BG742275 BQ644991 BQ651311 BQ679097
Unigene Cluster for ACAT2: Acetyl-Coenzyme A acetyltransferase 2 Hs.571037 [show with all ESTs ] Unigene Representative Sequence: AK294273 GeneLoc Exon Structure 5/11 Alternative Splicing Database (ASD) splice patterns (SP) for ACAT2 (see all 11
) ExUns: 1a · 1b ^ 2a · 2b · 2c · 2d ^ 3 ^ 4a · 4b · 4c ^ 5 ^ 6a · 6b · 6c · 6d · 6e · 6f · 6g ^ 7 ^ 8a · 8b ^ 9 SP1 :     -   -   -   -         -     -   -                     SP2 :     -   -   -   -         -     -                       SP3 :                   -     -   -                     SP4 :                   -     -   -                     SP5 :                   -     -   -                    
About this scheme ECgene alternative splicing isoforms for ACAT2 1 Ensembl transcript including schematic representation : ENST00000367048
Expression for ACAT2
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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ACAT2 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for ACAT2 1 / 2 / 3
3 probe-sets matching ACAT2 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TCCAAGCTAASOURCE GeneReport for Unigene cluster: Hs.571037 Expression variation in blood from EXPOLDB for ACAT2
Orthologs for ACAT2
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for ACAT2 gene from 5/11 species (see all 11
)
About this table Species with no ortholog for ACAT2 ENSEMBL Gene Tree for ACAT2 Paralogs for ACAT2 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for ACAT2 gene ACAT1 2 ACAA2 2
SNPs/Variants for ACAT2 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for ACAT2 (up to first 250kb)
Disorders & Mutations for ACAT2
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 100678
1 Novoseek disease relationship for ACAT2 gene
About this table 1 PharmGKB disease relationship for ACAT2 gene
Disease
PharmGKB Relations
PubMed IDs for articles supporting these relationships
Schizophrenia PD  15121641
About this table Human Gene Mutation Database : ACAT2 Genetic Association Database: ACAT2 Human Genome Epidemiology Navigator: ACAT2 (9 documents)
Medical News for ACAT2 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for ACAT2 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/41 PubMed articles for ACAT2 gene (see all 41
): High resolution crystal structures of human cytosolic thiolase (CT): a comparison of the active sites of human CT, bacterial thiolase, and bacterial KAS I. (PubMed id 15733928) 1, 3, 4 Kursula P.... Wierenga R.K. (2005) Molecular cloning and nucleotide sequence of complementary DNA for human hepatic cytosolic acetoacetyl-coenzyme A thiolase. (PubMed id 7911016) 1, 3, 4 Song X.-Q....Orii T. (1994) Acyl-CoA: cholesterol acyltransferase-2 gene polymorphisms and their association with plasma lipids and coronary artery disease risks. (PubMed id 16195894) 3, 6 He X....Heng C.K. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) The influence of the acyl-CoA:cholesterol acyltransferase-1 gene (-77G-->A) polymorphisms on plasma lipid and apolipoprotein levels in normolipidemic and hyperlipidemic subjects. (PubMed id 15158756) 3, 6 Ohta T....Fukuyama S. (2004) The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404) 3, 4 Mungall A.J.... Beck S. (2003) Evidence for substantial effect modification by gender in a large-scale genetic association study of the metabolic syndrome among coronary heart disease patients. (PubMed id 14557872) 3, 6 McCarthy J.J....Topol E.J. (2003) Effects of a new single-nucleotide polymorphism in the Acyl-CoA:cholesterol acyltransferase-2 gene on plasma lipids and apolipoproteins in patients with hyperlipidemia. (PubMed id 12621162) 3, 6 Katsuren K....Ohta T. (2003) Transcript encoded on the opposite strand of the human steroid 21- hydroxylase/complement component C4 gene locus. (PubMed id 2475872) 2, 3 Morel Y.... Miller W.L. (1989) Assignment of the human cytosolic acetoacetyl-coenzyme A thiolase (ACAT2) gene to chromosome 6q25.3-q26. (PubMed id 8812443) 1, 3 Masuno M....Kuroki Y. (1996)
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Genome Databases showing ACAT2
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing ACAT2
(According to HUGE )
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Specialized Databases showing ACAT2 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for ACAT2 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for ACAT2:
Tocris compounds for ACAT2
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