Aliases for ABTB2 Gene
Aliases for ABTB2 Gene
External Ids for ABTB2 Gene
- HGNC: 23842
- Entrez Gene: 25841
- Ensembl: ENSG00000166016
- UniProtKB: Q8N961
Previous GeneCards Identifiers for ABTB2 Gene
- GC11M034136
- GC11M033869
Summaries for ABTB2 Gene
GeneCards Summary for ABTB2 Gene
ABTB2 (Ankyrin Repeat And BTB Domain Containing 2) is a Protein Coding gene. Diseases associated with ABTB2 include Dravet Syndrome. GO annotations related to this gene include protein heterodimerization activity. An important paralog of this gene is BTBD11.
UniProtKB/Swiss-Prot for ABTB2 Gene
-
May be involved in the initiation of hepatocyte growth.
No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ABTB2 Gene
Genomics for ABTB2 Gene
Regulatory Elements for ABTB2 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH11G034241 | 1.9 | FANTOM5 Ensembl ENCODE dbSUPER | 17.8 | +114.5 | 114488 | 3.6 | HDGF PKNOX1 SIN3A FEZF1 ZNF2 YY1 FOS DEK JUNB SMARCB1 | ABTB2 PIR39921 GC11M034177 |
| GH11G034343 | 1.5 | Ensembl ENCODE dbSUPER | 20.7 | +12.7 | 12692 | 4.6 | FOXA2 ATF1 ARNT MLX ZNF133 SIN3A ARID4B DMAP1 ZNF48 YY1 | ABTB2 CAT LOC100216355 |
| GH11G034213 | 1.8 | FANTOM5 Ensembl ENCODE dbSUPER | 17.2 | +143.5 | 143469 | 2.3 | FOXA2 MLX ARID4B FEZF1 DMAP1 TCF12 GTF3C2 ZNF121 GATA2 ELK1 | ABTB2 NAT10 PIR39921 GC11M034177 |
| GH11G034416 | 1.3 | Ensembl dbSUPER | 23 | -59.0 | -58984 | 0.5 | HDGF ATF1 PKNOX1 AGO1 SIN3A DMAP1 ZNF48 YY1 TCF12 GATA2 | CAT ABTB2 GC11P034408 CIR1P3 |
| GH11G034356 | 1.4 | ENCODE dbSUPER | 20.5 | -0.3 | -253 | 3.4 | HDGF PKNOX1 FOXA2 ARNT WRNIP1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B | ABTB2 CAT ENSG00000220204 |
- Transcription factor binding sites by QIAGEN in the ABTB2 gene promoter:
Regulatory Element Products
Genomic Location for ABTB2 Gene
- Chromosome:
- 11
- Start:
- 34,150,987 bp from pter
- End:
- 34,358,008 bp from pter
- Size:
- 207,022 bases
- Orientation:
- Minus strand
Genomic View for ABTB2 Gene
- Cytogenetic band:
-
- 11p13 by Ensembl
- 11p13 by Entrez Gene
- 11p13 by HGNC
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for ABTB2 Gene
Proteins for ABTB2 Gene
-
Protein details for ABTB2 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q8N961-ABTB2_HUMAN
- Recommended name:
- Ankyrin repeat and BTB/POZ domain-containing protein 2
- Protein Accession:
- Q8N961
- A8K6S9
- E9PRW7
- Q52LD6
- Q6MZW4
- Q8NB44
Protein attributes for ABTB2 Gene
- Size:
- 1025 amino acids
- Molecular mass:
- 113656 Da
- Quaternary structure:
- No Data Available
- SequenceCaution:
-
- Sequence=AAH93968.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAC03697.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAF84433.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAF84433.1; Type=Erroneous termination; Positions=101; Note=Translated as Glu.; Evidence={ECO:0000305};
Protein Expression for ABTB2 Gene
Post-translational modifications for ABTB2 Gene
Other Protein References for ABTB2 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
-
Custom Antibody ServicesOriGene Antibodies for ABTB2
- Novus Biologicals Antibodies for ABTB2
-
Abcam antibodies for ABTB2
- Invitrogen Antibodies for ABTB2
- antibodies-online Antibodies for ABTB2: See all 18
- Search GeneTex for Antibodies for ABTB2
Protein Products
-
OriGene Purified Proteins for ABTB2
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Assay Products
- antibodies-online Kits for ABTB2: See all 8
No data available for DME Specific Peptides for ABTB2 Gene
Domains & Families for ABTB2 Gene
Gene Families for ABTB2 Gene
Protein Domains for ABTB2 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for ABTB2 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
No data available for UniProtKB/Swiss-Prot for ABTB2 Gene
Function for ABTB2 Gene
Molecular function for ABTB2 Gene
- UniProtKB/Swiss-Prot Function:
- May be involved in the initiation of hepatocyte growth.
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0003674 | molecular_function | ND | -- |
| GO:0031625 | ubiquitin protein ligase binding | IBA | -- |
| GO:0046982 | protein heterodimerization activity | IEA | -- |
Phenotypes for ABTB2 Gene
- MGI mutant phenotypes for ABTB2:
- inferred from 1 alleles
- GenomeRNAi human phenotypes for ABTB2:
Animal Models for ABTB2 Gene
- MGI Knock Outs for ABTB2:
-
- Abtb2 tm1a(KOMP)Wtsi
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for ABTB2
-
-
ViGene Biosciences lentiviral particle packaged cDNA for ABTB2 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for ABTB2 gene
- Search ViGene Biosciences for ABTB2
CRISPR Products
-
OriGene CRISPR knockouts for ABTB2
-
Santa Cruz Biotechnology (SCBT) CRISPR for ABTB2
- GenScript: Design CRISPR guide RNA sequences for ABTB2
miRNA for ABTB2 Gene
- miRTarBase miRNAs that target ABTB2
miRNA Products
- Search ViGene Biosciences for ABTB2
Inhibitory RNA Products
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-
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Clone Products
-
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- VectorBuilder custom plasmid, inducible vectors for ABTB2
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-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
-
Horizon Cell Lines for ABTB2
-
ViGene Biosciences adenoviral particle packaged cDNA for ABTB2 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for ABTB2 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for ABTB2 gene
Flow Cytometry Products
No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for ABTB2 Gene
Localization for ABTB2 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005575 | cellular_component | ND | -- |
| GO:0005737 | cytoplasm | IBA | -- |
| GO:0019005 | SCF ubiquitin ligase complex | IBA | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot for ABTB2 Gene
Pathways & Interactions for ABTB2 Gene
Interacting Proteins for ABTB2 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0030162 | regulation of proteolysis | IBA | -- |
| GO:0042787 | protein ubiquitination involved in ubiquitin-dependent protein catabolic process | IBA | -- |
| GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | IBA | -- |
| GO:0097237 | cellular response to toxic substance | IEA | -- |
No data available for Pathways by source and SIGNOR curated interactions for ABTB2 Gene
Transcripts for ABTB2 Gene
mRNA/cDNA for ABTB2 Gene
- (1) REFSEQ mRNAs :
- (7) Additional mRNA sequences :
- (83) Selected AceView cDNA sequences:
- (2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for ABTB2 Gene
CRISPR Products
-
OriGene CRISPR knockouts for ABTB2
-
Santa Cruz Biotechnology (SCBT) CRISPR for ABTB2
- GenScript: Design CRISPR guide RNA sequences for ABTB2
miRNA Products
- Search ViGene Biosciences for ABTB2
Inhibitory RNA Products
- Origene RNAi, shRNA, and siRNA products in human, mouse, rat for ABTB2
- Browse OriGene Inhibitory RNA Products For ABTB2
-
ViGene Biosciences ready-to-package AAV shRNAs for ABTB2 gene
Clone Products
-
OriGene ORF clones in human for ABTB2
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- VectorBuilder custom plasmid, inducible vectors for ABTB2
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for ABTB2
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Expression for ABTB2 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
-
Blood (Hematopoietic System)
- Granulocytes Peripheral Blood
-
Gonad (Reproductive System)
- Testis Somatic Cells Primitive Gonad
-
Testis (Reproductive System)
- Testis Somatic Cells Primitive Gonad
- Bone (Muscoskeletal System)
- Neural Tube (Nervous System)
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ABTB2 Gene
NURSA nuclear receptor signaling pathways regulating expression of ABTB2 Gene:
ABTB2SOURCE GeneReport for Unigene cluster for ABTB2 Gene:
Hs.23361Evidence on tissue expression from TISSUES for ABTB2 Gene
- Nervous system(4.2)
Primer Products
-
OriGene qPCR primer pairs for ABTB2
No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ABTB2 Gene
Orthologs for ABTB2 Gene
This gene was present in the common ancestor of animals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | ABTB2 35 34 |
|
OneToOne | |
| cow (Bos Taurus) |
Mammalia | ABTB2 34 35 |
|
||
| dog (Canis familiaris) |
Mammalia | ABTB2 34 35 |
|
||
| mouse (Mus musculus) |
Mammalia | Abtb2 35 16 34 |
|
OneToOne | |
| oppossum (Monodelphis domestica) |
Mammalia | ABTB2 35 |
|
OneToOne | |
| rat (Rattus norvegicus) |
Mammalia | Abtb2 34 |
|
||
| platypus (Ornithorhynchus anatinus) |
Mammalia | -- 35 |
|
OneToMany | |
| -- 35 |
|
OneToMany | |||
| -- 35 |
|
OneToMany | |||
| chicken (Gallus gallus) |
Aves | ABTB2 35 34 |
|
OneToOne | |
| lizard (Anolis carolinensis) |
Reptilia | ABTB2 35 |
|
OneToOne | |
| zebrafish (Danio rerio) |
Actinopterygii | abtb2b 35 |
|
OneToMany | |
| LOC100007078 34 |
|
||||
| BX511065.1 35 |
|
OneToMany | |||
| fruit fly (Drosophila melanogaster) |
Insecta | CG43980 34 35 |
|
||
| African malaria mosquito (Anopheles gambiae) |
Insecta | AgaP_AGAP011728 34 |
|
- Species where no ortholog for ABTB2 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for ABTB2 Gene
(1) SIMAP similar genes for ABTB2 Gene using alignment to 1 proteins:
Variants for ABTB2 Gene
| SNP ID | Clin | Chr 11 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000008634 | -- | 34,356,765(+) | GCGTC(C/G)TTGTT | reference, missense | |
| rs1000029253 | -- | 34,296,936(+) | CCCAA(A/C)TTCTG | intron-variant | |
| rs1000045925 | -- | 34,280,923(+) | CTACC(C/T)GCAAT | intron-variant | |
| rs1000057520 | -- | 34,239,435(+) | AAGCA(A/G)TCCTC | intron-variant | |
| rs1000069444 | -- | 34,153,914(+) | GGACA(A/G)CTAGG | intron-variant, upstream-variant-2KB |
Relevant External Links for ABTB2 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- ABTB2
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ABTB2 Gene
Disorders for ABTB2 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| dravet syndrome |
|
|
Relevant External Links for ABTB2
No data available for UniProtKB/Swiss-Prot and Genatlas for ABTB2 Gene
Publications for ABTB2 Gene
- Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
- A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. (PMID: 26673895) KA+rlA+ K. … GAPrlich D. (Elife 2015) 3 64
- GABRA1 and STXBP1: novel genetic causes of Dravet syndrome. (PMID: 24623842) Carvill G.L. … Mefford H.C. (Neurology 2014) 3 64
Products for ABTB2 Gene
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- Custom Antibody ServicesOriGene Antibodies for ABTB2
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- Novus Biologicals Antibodies for ABTB2
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- antibodies-online Antibodies for ABTB2: See all 18
- antibodies-online Kits for ABTB2: See all 8
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- VectorBuilder custom plasmid, inducible vectors for ABTB2
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- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for ABTB2 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
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- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
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- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer




