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Aliases for ABRACL Gene

Aliases for ABRACL Gene

  • ABRA C-Terminal Like 2 3
  • ABRA C-Terminal-Like Protein 3 4
  • C6orf115 3 4
  • Chromosome 6 Open Reading Frame 115 2
  • Costars Family Protein ABRACL 3
  • Costars 3
  • HSPC280 3
  • PRO2013 3

External Ids for ABRACL Gene

Previous Symbols for ABRACL Gene

  • C6orf115

Summaries for ABRACL Gene

GeneCards Summary for ABRACL Gene

ABRACL (ABRA C-Terminal Like) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ABRACL Gene

Genomics for ABRACL Gene

Genomic Location for ABRACL Gene

Start:
139,028,682 bp from pter
End:
139,043,302 bp from pter
Size:
14,621 bases
Orientation:
Plus strand

Genomic View for ABRACL Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ABRACL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ABRACL Gene

No data available for Regulatory Elements for ABRACL Gene

Proteins for ABRACL Gene

  • Protein details for ABRACL Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9P1F3-ABRAL_HUMAN
    Recommended name:
    Costars family protein ABRACL
    Protein Accession:
    Q9P1F3
    Secondary Accessions:
    • Q5SZC8
    • Q9P0A1

    Protein attributes for ABRACL Gene

    Size:
    81 amino acids
    Molecular mass:
    9056 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAF28958.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for ABRACL Gene

neXtProt entry for ABRACL Gene

Proteomics data for ABRACL Gene at MOPED

Post-translational modifications for ABRACL Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ABRACL Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ABRACL Gene

Domains for ABRACL Gene

Protein Domains for ABRACL Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

ABRAL_HUMAN
Family:
  • Belongs to the costars family.:
    • Q9P1F3
genes like me logo Genes that share domains with ABRACL: view

No data available for Gene Families for ABRACL Gene

Function for ABRACL Gene

Phenotypes for ABRACL Gene

GenomeRNAi human phenotypes for ABRACL:
genes like me logo Genes that share phenotypes with ABRACL: view

miRNA for ABRACL Gene

miRTarBase miRNAs that target ABRACL

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for ABRACL Gene

Localization for ABRACL Gene

No data available for Gene Ontology (GO) - Cellular Components for ABRACL Gene

Pathways for ABRACL Gene

SuperPathways for ABRACL Gene

No Data Available

Interacting Proteins for ABRACL Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000356632%0d%0a9606.ENSP00000344818%0d%0a9606.ENSP00000332721%0d%0a
Selected Interacting proteins: ENSP00000356632 for ABRACL Gene via STRING

Gene Ontology (GO) - Biological Process for ABRACL Gene

None

No data available for Pathways by source for ABRACL Gene

Transcripts for ABRACL Gene

mRNA/cDNA for ABRACL Gene

Unigene Clusters for ABRACL Gene

ABRA C-terminal like:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ABRACL Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3a · 3b
SP1: -
SP2: -
SP3:

Relevant External Links for ABRACL Gene

GeneLoc Exon Structure for
ABRACL
ECgene alternative splicing isoforms for
ABRACL

Expression for ABRACL Gene

mRNA expression in normal human tissues for ABRACL Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for ABRACL Gene

SOURCE GeneReport for Unigene cluster for ABRACL Gene Hs.600861

genes like me logo Genes that share expressions with ABRACL: view

Orthologs for ABRACL Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for ABRACL Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ABRACL 36
  • 99.18 (n)
  • 100 (a)
ABRACL 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ABRACL 36
  • 90.95 (n)
  • 95.06 (a)
ABRACL 37
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ABRACL 36
  • 91.77 (n)
  • 98.77 (a)
ABRACL 37
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Abracl 36
  • 88.48 (n)
  • 92.59 (a)
Abracl 16
Abracl 37
  • 93 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ABRACL 37
  • 83 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ABRACL 37
  • 86 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Abracl 36
  • 87.24 (n)
  • 93.83 (a)
chicken
(Gallus gallus)
Aves ABRACL 37
  • 84 (a)
OneToOne
C6ORF115 36
  • 80.66 (n)
  • 85.19 (a)
lizard
(Anolis carolinensis)
Reptilia ABRACL 37
  • 84 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia abracl 36
  • 79.01 (n)
  • 90.12 (a)
zebrafish
(Danio rerio)
Actinopterygii abracl 36
  • 69.14 (n)
  • 80.25 (a)
abracl 37
  • 79 (a)
OneToOne
thale cress
(Arabidopsis thaliana)
eudicotyledons AT4G33640 36
  • 65.38 (n)
  • 70.51 (a)
rice
(Oryza sativa)
Liliopsida Os03g0690000 36
  • 61.18 (n)
  • 68.35 (a)
Species with no ortholog for ABRACL:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ABRACL Gene

ENSEMBL:
Gene Tree for ABRACL (if available)
TreeFam:
Gene Tree for ABRACL (if available)

Paralogs for ABRACL Gene

Selected SIMAP similar genes for ABRACL Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with ABRACL: view

No data available for Paralogs for ABRACL Gene

Variants for ABRACL Gene

Sequence variations from dbSNP and Humsavar for ABRACL Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs2498642 -- 139,026,682(+) ctttc(C/T)ttttt upstream-variant-2KB
rs2498643 -- 139,039,936(+) ATAAA(A/G)ATAAA intron-variant
rs2504376 -- 139,028,784(+) TCCTT(C/G)GCCTC utr-variant-5-prime
rs2504377 -- 139,040,800(+) CTTCA(C/T)GCTGG intron-variant
rs3813331 -- 139,034,021(-) AAATA(C/T)TTGTG intron-variant

Relevant External Links for ABRACL Gene

HapMap Linkage Disequilibrium report
ABRACL

No data available for Structural Variations from Database of Genomic Variants (DGV) for ABRACL Gene

Disorders for ABRACL Gene

No disorders were found for ABRACL Gene.

No data available for UniProtKB/Swiss-Prot for ABRACL Gene

Publications for ABRACL Gene

  1. Solution structure of the human HSPC280 protein. (PMID: 21082705) Lin J. … Wang J. (Protein Sci. 2011) 2 3 4
  2. Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. (PMID: 12665801) Gevaert K. … Vandekerckhove J. (Nat. Biotechnol. 2003) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PMID: 11042152) Zhang Q.-H. … Chen Z. (Genome Res. 2000) 3 4
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for ABRACL Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate ABRACL
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for ABRACL
    • Block miRNA regulation of ABRACL using miScript Target Protectors

    Sources for ABRACL Gene

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