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Aliases & Descriptions for ABL2
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ABLL 2 , 3 , 5 ARG 1 , 2 , 3 , 5 Abelson-related 2 EC 2.7.10.2 3 FLJ22224 2 FLJ31718 2 FLJ41441 2 OTTHUMP00000033139 2
Descriptions Abelson murine leukemia viral (v-abl) oncogene homolog 2 2 Abelson murine leukemia viral oncogene homolog 2 3 Abelson-related gene protein 3 Tyrosine kinase ARG 3 arg tyrosine kinase 2 v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene) 2
Search outside databases for aliases for ABL2 genePrevious GC identifers: GC01M176601 GC01M174505 GC01M175616 GC01M176316 GC01M175804
Summaries for ABL2 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for ABL2 : This gene encodes a member of the Abelson family of nonreceptor tyrosine protein kinase. Theprotein is highly similar to the ABL1 protein, including the tyrosine kinase, SH2 and SH3 domains,and has a role in cytoskeletal rearrangements by its C-terminal F-actin- and microtubule-bindingsequences. This gene is expressed in both normal and tumor cells, and is involved in translocationwith the ETV6 gene in leukemia. Multiple alternatively spliced transcript variants encodingdifferent protein isoforms have been found for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: ABL2_HUMAN, P42684 Function : Regulates cytoskeleton remodeling during cell differentiation, cell division and celladhesion. Localizes to dynamic actin structures, and phosphorylates CRK and CRKL, DOK1, and otherproteins controlling cytoskeleton dynamics
Genomic Location for ABL2
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the ABL2 gene Entrez Gene cytogenetic band: 1q24-q25 Ensembl cytogenetic band: 1q25.2 HGNC cytogenetic band: 1q25.2 ABL2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01M177339:
(about GC identifiers )
Start:
177,335,085 bp from pter
End:
177,465,390 bp from pter
Size:
130,306 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000001.9 NT_004487.18 Proteins for ABL2
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: ABL2_HUMAN, P42684 (See
protein sequence )Recommended Name: Tyrosine-protein kinase ABL2 Size : 1182 amino acids; 128343 Da
Cofactor : Magnesium or manganese
Subcellular location : Cytoplasm, cytoskeleton
PDB structure from and Proteopedia : 2ECD (3D)
 3GVU (3D)
 
Secondary accessions : A0M8X0 Q5T0X6 Q5W0C5 Q6NZY6 Q7Z301Alternative splicing : 4 isoforms : P42684-1 P42684-2 P42684-3 P42684-4
Post-translational modifications:
Phosphorylated upon DNA damage, probably by ATM or ATR1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (5 alternative transcripts):
NP_001093578.1 NP_001129472.1 NP_001129473.1 NP_005149.3 NP_009298.1 ENSEMBL proteins: ENSP00000356595 ENSP00000386152 ENSP00000339209 ENSP00000375897 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for ABL2: Assays for ABL2:
Protein
Domains/ Families for ABL2(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P42684 ProtoNet protein and cluster: P42684
3 Blocks protein families : IPB000980 SH2 domain signature IPB001452 SH3 domain signature IPB008266 Tyrosine protein kinase UniProtKB/Swiss-Prot: ABL2_HUMAN, P42684 Similarity : Belongs to the protein kinase superfamily. Tyr protein kinase family. ABL subfamilySimilarity : Contains 1 protein kinase domainSimilarity : Contains 1 SH2 domainSimilarity : Contains 1 SH3 domain
Gene Function for ABL2
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 5 ): NM_007314 Applied Biosystems Silencer ® siRNAs for ABL2 Sigma-Aldrich siRNA and siRNA Panels for ABL2 Sigma-Aldrich shRNA Panels and shRNA for ABL2 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 5 ): NM_001100108                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 5 ): NM_001100108                                  untagged cDNA clones in CMV expression vector (see all 6 ): NM_001100108  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_007314 UniProtKB/Swiss-Prot: ABL2_HUMAN, P42684 Function : Regulates cytoskeleton remodeling during cell differentiation, cell division and celladhesion. Localizes to dynamic actin structures, and phosphorylates CRK and CRKL, DOK1, and otherproteins controlling cytoskeleton dynamics Catalytic activity : ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphateEnzyme regulation : Stabilized in the inactive form by an association between the SH3 domain and theSH2-TK linker region, interactions of the amino-terminal cap, and contributions from anamino-terminal myristoyl group and phospholipids. Activated by autophosphorylation as well as bySRC-family kinase-mediated phosphorylation. Activated by RIN1 binding to the SH2 and SH3 domains.Inhibited by imatinib mesylate (Gleevec) which is used for the treatment of chronic myeloidleukemia (CML) Enzyme Number (IUBMB): EC 2.7.10.2
Genatlas biochemistry entry for ABL2 :Abelson murine leukemia viral (v-abl) oncogene homolog 2
10 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Abl2) :5/7 Gene Ontology (GO) molecular function terms (links to tree view) (see all 7
):
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Pathways & Interactions for ABL2
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for ABL2 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for ABL2 5/28 Interacting proteins for ABL2 (ENSP00000356595 3 P42684 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 28
)About this table 5 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for ABL2 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for ABL2 2 Novoseek chemical compound relationships for ABL2 gene
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Transcripts for ABL2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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siRNAs from Applied Biosystems ,
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shRNA from
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OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 5 ): NM_007314 Sigma-Aldrich siRNA and siRNA Panels for ABL2 Sigma-Aldrich shRNA Panels and shRNA for ABL2 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001100108 NM_001136000 NM_001136001 NM_005158 NM_007314
REFSEQ mRNAs for ABL2 gene (5 alternative transcripts): NM_001100108.1 NM_001136000.1 NM_001136001.1 NM_005158.3 NM_007314.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001100108 NM_001136000 NM_001136001 NM_005158 NM_007314
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 5 ): NM_001100108                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 5 ): NM_001100108                                  untagged cDNA clones in CMV expression vector (see all 6 ): NM_001100108  
Additional cDNA sequence: AK025877.1 AK056280.1 AK225255.1 AK309549.1 AK311045.1 BC065912.1 BX538317.1 FJ542283.1 FJ542284.1 FJ542285.1 FJ542286.1 M35296.1
12 DOTS entries : DT.100754808 DT.100755319 DT.423211 DT.306356 DT.102826726 DT.91661488 DT.121446659 DT.121446570 DT.121446577 DT.95152104 DT.95127239 DT.97818073
24/181 AceView cDNA sequences (see all 181
):BC065912 AA371305 BQ227288 M35296 BM676754 NM_005158 AW613399 BM466684 BQ672160 BQ674289 F12791 H80903 BU634226 CA447716 NM_007314 BU169285 Z43953 CD369364 BQ678351 BQ216804 AA378992 F06302 BM719893 CD367407
highest scoring ESTs for ABL2 :M35296 AA622941 AI205337 AL710170 AW992442 AW997225 AW999983 BC065912 BE465639 BE775191
Unigene Cluster for ABL2: V-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene) Hs.159472 [show with all ESTs ] Unigene Representative Sequence: NM_007314 GeneLoc Exon Structure 4 Ensembl transcripts including schematic representations : ENST00000367623
ENST00000408940
ENST00000344730
ENST00000392043
Expression for ABL2
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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ABL2 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for ABL2 1 / 2 / 3
10 probe-sets matching ABL2 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CGGATTCAATSOURCE GeneReport for Unigene cluster: Hs.159472 Expression variation in blood from EXPOLDB for ABL2
UniProtKB/Swiss-Prot: ABL2_HUMAN, P42684 Tissue specificity : Widely expressed
Orthologs for ABL2
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for ABL2 gene from 5/10 species (see all 10
)
About this table Species with no ortholog for ABL2 ENSEMBL Gene Tree for ABL2 Paralogs for ABL2 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for ABL2 gene ABL1 2 FRK 2
SNPs/Variants for ABL2 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for ABL2 (up to first 250kb)
Disorders & Mutations for ABL2
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 164690
4 Novoseek disease relationships for ABL2 gene
About this table Human Genome Epidemiology Navigator: ABL2 (2 documents) Tumor Gene Database : ABL2
Medical News for ABL2 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for ABL2 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/72 PubMed articles for ABL2 gene (see all 72
): A novel human gene closely related to the abl proto-oncogene. (PubMed id 3787260) 2, 3, 4 Kruh G.D.... Aaronson S.A. (1986) Proteomics analysis of protein kinases by target class-selective prefractionation and tandem mass spectrometry. (PubMed id 17192257) 3, 4 Wissing J.... Daub H. (2007) The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 3, 4 Gregory S.G.... Bentley D.R. (2006) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 3, 4 Olsen J.V....Mann M. (2006) RIN1 is an ABL tyrosine kinase activator and a regulator of epithelial-cell adhesion and migration. (PubMed id 15886098) 3, 4 Hu H.... Colicelli J. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Profiling of tyrosine phosphorylation pathways in human cells using mass spectrometry. (PubMed id 12522270) 3, 4 Salomon A.R.... Peters E.C. (2003) The complete coding sequence of arg defines the Abelson subfamily of cytoplasmic tyrosine kinases. (PubMed id 2198571) 3, 4 Kruh G.D.... Aaronson S.A. (1990) Catalase activity is regulated by c-Abl and Arg in the oxidative stress response. (PubMed id 12777400) 1, 3 Cao C....Kufe D. (2003) Eight full-length abelson related gene (Arg) isoforms are constitutively expressed in caki-1 cell line and cell distribution of two isoforms has been analyzed after transfection. (PubMed id 18810762) 1, 3 Bianchi C....Perego R.A. (2008)
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Genome Databases showing ABL2
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing ABL2
(According to HUGE )
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Specialized Databases showing ABL2 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
ATLAS Chromosomes in Cancer entry for ABL2 Genetics and Cytogenetics in Oncology and Haematology NIEHS-SNPs http://egp.gs.washington.edu/data/abl2/ CGP resequencing studies http://www.sanger.ac.uk/perl/genetics/CGP/cgp_viewer?action=gene&ln=ABL2
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-- Services for ABL2 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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