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Aliases & Descriptions for ABI3BP
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| DKFZP586L2024 1 | | FLJ41743 2 | | FLJ41754 2 | | NESHBP 1, 2, 3 | | NeshBP 3 | | TARSH 1, 2, 3 | | Tarsh 3 |
| | | Descriptions |
|---|
| ABI family, member 3 (NESH) binding protein 2 | | ABI family, member 3 binding protein 1 | | ABI gene family member 3-binding protein 3 | | ABI gene family, member 3 (NESH) binding protein 2 | | Nesh-binding protein 3 | | target of Nesh-SH3 2 |
|
| | Search outside databases for aliases for ABI3BP gene |
Summaries for ABI3BP(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| -- |
Genomic Location for ABI3BP
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the ABI3BP gene 
Entrez Gene cytogenetic band: 3q12 Ensembl cytogenetic band: 3q12.2 HGNC cytogenetic band: 3q12ABI3BP Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure GeneLoc location for GC03M101951:
(about GC identifiers)
Start:
|
101,950,869 bp from pter |
End:
|
102,195,004 bp from pter |
Size:
|
244,136 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000003.10 NT_005612.15
| Proteins for ABI3BP
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: TARSH_HUMAN, Q7Z7G0 (See
protein sequence)Recommended Name: Target of Nesh-SH3 precursor Size: 1075 amino acids; 118642 Da
Subunit: Probably interacts with ABI3
Secondary accessions: Q6ZW20 Q6ZW22 Q9C082 Q9UFI6Alternative splicing: 4 isoforms: Q7Z7G0-1 Q7Z7G0-2 Q7Z7G0-3 Q7Z7G0-4 REFSEQ proteins: NP_056244.2
ENSEMBL proteins: ENSP00000381332 ENSP00000284322 ENSP00000373189 ENSP00000273339 ENSP00000373190
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
Antibodies for ABI3BP: Assays for ABI3BP: | Protein
Domains/ Families for ABI3BP(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q7Z7G0
ProtoNet protein and cluster: Q7Z7G0 UniProtKB/Swiss-Prot: TARSH_HUMAN, Q7Z7G0Similarity: Contains 2 fibronectin type-III domains | Gene Function for ABI3BP
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_015429
Applied Biosystems Silencer® siRNAs for ABI3BP
Sigma-Aldrich siRNA for ABI3BP  Sigma-Aldrich shRNA for ABI3BP  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_015429                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_015429                                  untagged cDNA clones in CMV expression vector (see all 2): NM_015429 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_015429
| Pathways & Interactions for ABI3BP
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
2 Interacting proteins for ABI3BP (ENSP000002843223) via UniProtKB, MINT, and/or STRINGAbout this table
|
Drugs & Compounds for ABI3BP(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for ABI3BP
|
Transcripts for ABI3BP(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_015429
Sigma-Aldrich siRNA for ABI3BP  Sigma-Aldrich shRNA for ABI3BP  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_015429 REFSEQ mRNAs for ABI3BP gene: NM_015429.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_015429               OriGene GFP tagged cDNA clone in CMV expression vector: NM_015429                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_015429                                  untagged cDNA clones in CMV expression vector (see all 2): NM_015429  Additional cDNA sequence: AB056106.1 AK025204.1 AK093861.1 AK123737.1 AK123748.1 AK299938.1 AL117664.1 AL162038.1 AL833204.1 BC030221.1 BX648726.1 21 DOTS entries: DT.313065 DT.97791341 DT.100787624 DT.97788516 DT.99985081 DT.100678469 DT.101981876 DT.306802 DT.95313476 DT.100787626 DT.120847676 DT.120847770 DT.120847631 DT.100001413 DT.120847650 DT.100736619 DT.120847692 DT.120847775 DT.40270440 DT.95306976 DT.97785684 24/174 AceView cDNA sequences (see all 174
):CD674022 AL598441 AI378667 AA328200 BE501280 BX385808 BG741740 AW471460 BX284017 CA390839 AB056106 AK123748 CD674023 AA345718 AK025204 AA256582 AI123952 AA304549 AA009827 BM888508 D45547 BP335920 AU280309 W81545
highest scoring ESTs for ABI3BP:AA742544 AA009827 AK025204 AL597809 AL701288 AL706230 AL706242 AL709454 AL709618 AL833204 Unigene Cluster for ABI3BP: ABI family, member 3 (NESH) binding protein Hs.477015 [show with all ESTs]Unigene Representative Sequence: BX648726
GeneLoc Exon Structure
5 Alternative Splicing Database (ASD) splice patterns (SP) for ABI3BP
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14 | ^ | 15 | ^ | 16 | ^ | 17 | ^ | 18 | ^ | 19a | · | 19b | ^ | 20 | ^ | 21 | ^ | 22 | ^ | 23 | ^ | 24 | ^ | |
| SP1: | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 25 | ^ | 26 | ^ | 27 | ^ | 28 | ^ | 29 | ^ | 30 | ^ | 31 | ^ | 32a | · | 32b | ^ | 33 | ^ | 34 | ^ | 35 | ^ | 36 | ^ | 37a | · | 37b | |
| SP1: | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for ABI3BP
5 Ensembl transcripts including schematic representations: ENST00000398284
ENST00000284322
ENST00000383691
ENST00000273339
ENST00000383692
|
Expression for ABI3BP
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| ABI3BP expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for ABI3BP
1 / 2 / 3 7 probe-sets matching ABI3BP gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: CTTCAATCTT
SOURCE GeneReport for Unigene cluster: Hs.477015 UniProtKB/Swiss-Prot: TARSH_HUMAN, Q7Z7G0Tissue specificity: Expressed in brain, heart, lung, liver, pancreas kidney and placenta |
Orthologs for ABI3BP
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ABI3BP gene from 4 species
About this table Species with no ortholog for ABI3BP
ENSEMBL Gene Tree for ABI3BP | Paralogs for ABI3BP(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for ABI3BP gene
- FNDC12
|
SNPs/Variants for ABI3BP(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for ABI3BP (up to first 250kb)
|
Disorders & Mutations for ABI3BP
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 606279
Human Genome Epidemiology Navigator: ABI3BP (1 document)
|
Medical News for ABI3BP(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for ABI3BP (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/13 PubMed articles for ABI3BP gene (see all 13
): |
Search for ABI3BP
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing ABI3BP
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing ABI3BP
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ABI3BP(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for ABI3BP(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for ABI3BP:

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| | | | Search Tocris compounds for ABI3BP |
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GeneCards Homepage - Last full update: 1 Jul 2009
Incremental update: 13 Oct 2009
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