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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ABHD16A Gene

protein-coding   GIFtS: 47
GCID: GC06M031665

Abhydrolase Domain Containing 16A

(Previous name: HLA-B associated transcript 5)
(Previous symbol: BAT5)
  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
Abhydrolase Domain Containing 16A1 2     PP1992
BAT51 2 3 5     Abhydrolase Domain-Containing Protein 16A2
HLA-B Associated Transcript 51 2     EC 3.-.-.-3
Protein G52 3     G53
NG262 3     HLA-B-Associated Transcript 53
D6S82E2 5     

External Ids:    HGNC: 139211   Entrez Gene: 79202   Ensembl: ENSG000002044277   OMIM: 1426205   UniProtKB: O958703   
ORGUL members:         
NONCODE14:n406217 n407045 n324615 n324617 n409276 see all 14      

Export aliases for ABHD16A gene to outside databases

Previous GC identifers: GC06M031440 GC06M031657 GC06M031661


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for ABHD16A Gene:
A cluster of genes, BAT1-BAT5, has been localized in the vicinity of the genes for tumor necrosis factor alpha and
tumor necrosis factor beta. These genes are all within the human major histocompatibility complex class III
region. The protein encoded by this gene is thought to be involved in some aspects of immunity. Alternatively
spliced transcript variants have been described. (provided by RefSeq, Apr 2010)

GeneCards Summary for ABHD16A Gene: 
ABHD16A (abhydrolase domain containing 16A) is a protein-coding gene, and is affiliated with the lncRNA class. Diseases associated with ABHD16A include coronary artery aneurysm, and meningioma. GO annotations related to this gene include hydrolase activity. An important paralog of this gene is ABHD16B.

Gene Wiki entry for ABHD16A (BAT5) Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000006.11  NT_007592.15  NT_113891.2  NT_167245.1  NT_167246.1  NT_167247.1  NT_167248.1  NT_167249.1  
NC_018917.2  
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for ABHD16A
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidABHD16A promoter sequence
   Search SABiosciences Chromatin IP Primers for ABHD16A

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ABHD16A


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6p21.3   Ensembl cytogenetic band:  6p21.33   HGNC cytogenetic band: 6p21.3

ABHD16A Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ABHD16A gene location

GeneLoc information about chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06M031665:  view genomic region     (about GC identifiers)

Start:
31,654,726 bp from pter      End:
31,671,221 bp from pter
Size:
16,496 bases      Orientation:
minus strand

6 alternative locations:
Chr6-,NT_167246 2,997,616-3,014,028      Chr6-,NT_167249 2,985,532-3,001,955      Chr6-,NT_167248 2,948,369-2,964,788     
Chr6-,NT_167247 3,034,406-3,050,818      Chr6-,NT_113891.2 3,164,345-3,180,755      Chr6-,NT_167245 2,940,298-2,956,709     
ORGUL member locations:
Legend (see complete legend)

ORGUL Member Locations for ABHD16A

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: ABHGA_HUMAN, O95870 (See protein sequence)
Recommended Name: Abhydrolase domain-containing protein 16A  
Size: 558 amino acids; 63243 Da
Subcellular location: Membrane; Multi-pass membrane protein (Potential)
Sequence caution: Sequence=CAI17808.2; Type=Erroneous initiation; Note=Translation N-terminally shortened;
Sequence=CAI18401.2; Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=CAM26084.1;
Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=CAM45793.1; Type=Erroneous
initiation; Note=Translation N-terminally shortened;
Secondary accessions: A2BEY3 B7Z4R6 Q5SRR1 Q5SRR2 Q8WYH0 Q9NW33
Alternative splicing: 2 isoforms:  O95870-1   O95870-2   

Explore the universe of human proteins at neXtProt for ABHD16A: NX_O95870

Explore proteomics data for ABHD16A at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_O95870

  • ABHD16A Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    ABHD16A Protein Expression
    REFSEQ proteins (2 alternative transcripts): 
    NP_001170986.1  NP_066983.1  

    ENSEMBL proteins: 
     ENSP00000379282   ENSP00000420585   ENSP00000418170   ENSP00000410347   ENSP00000420628  
     ENSP00000418331   ENSP00000419742   ENSP00000417566   ENSP00000365002   ENSP00000442151  

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    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016021integral to membrane IEA--

    ABHD16A for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    ABHD: Abhydrolase domain containing

    1 InterPro protein domain:
     IPR026604 ABHD16

    Graphical View of Domain Structure for InterPro Entry O95870

    ProtoNet protein and cluster: O95870

    UniProtKB/Swiss-Prot: ABHGA_HUMAN, O95870
    Similarity: Belongs to the AB hydrolase superfamily. ABHD16 family


    ABHD16A for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

         Enzyme Number (IUBMB): EC 3.-.-.-1

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016787hydrolase activity IEA--
         
    ABHD16A for ontologies           About GeneDecksing


    Animal Models:
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ABHD16A

    STRING Interaction Network Preview (showing 5 interactants - click image to see 16)

    5/29 Interacting proteins for ABHD16A (O958702, 3 ENSP000003792824) via UniProtKB, MINT, STRING, and/or I2D (see all 29)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    RNF5Q999422, 3, ENSP000003642354MINT-62601 MINT-62699 MINT-62775 I2D: score=5 STRING: ENSP00000364235
    ENSG00000183574Q999422, 3MINT-62601 MINT-62699 MINT-62775 I2D: score=5 
    ENSG00000223767Q999422, 3MINT-62601 MINT-62699 MINT-62775 I2D: score=5 
    ENSG00000225452Q999422, 3MINT-62601 MINT-62699 MINT-62775 I2D: score=5 
    ENSG00000227277Q999422, 3MINT-62601 MINT-62699 MINT-62775 I2D: score=5 
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ABHD16A (ABHGA)

    Search CenterWatch for drugs/clinical trials and news about ABHD16A / ABHGA

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ABHD16A gene (2 alternative transcripts): 
    NM_001177515.1  NM_021160.2  

    Unigene Cluster for ABHD16A:

    Abhydrolase domain containing 16A
    Hs.388188  [show with all ESTs]
    Unigene Representative Sequence: NR_033488
    18 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000395952(uc003nvy.2 uc010jtc.2) ENST00000468205 ENST00000475742
    ENST00000492084 ENST00000495769 ENST00000440843 ENST00000490209 ENST00000474007
    ENST00000471644 ENST00000477016 ENST00000498420 ENST00000496579 ENST00000492899
    ENST00000477462 ENST00000482224 ENST00000468037 ENST00000375842(uc003nvx.2 uc011dny.2)
    ENST00000538874(uc011doa.2)
    miRNA
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    2 QIAGEN miScript miRNA Assays for microRNAs that regulate ABHD16A:
    hsa-miR-3120-3p hsa-miR-944
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    Inhib. RNA
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    Additional mRNA sequence: 

    AF193047.2 AK001207.1 AK023194.1 AK055255.1 AK289469.1 AK297712.1 AK303496.1 AK308573.1 
    BC031839.1 NR_033488.1 NR_033489.1 

    17 DOTS entries:

    DT.417418  DT.100796812  DT.92437658  DT.100796822  DT.97847772  DT.100796818  DT.121387253  DT.100796823 
    DT.100798984  DT.40316178  DT.91673090  DT.99975386  DT.100768677  DT.121387217  DT.86858526  DT.95263729 
    DT.40255607 

    24/355 AceView cDNA sequences (see all 355):

    CB850714 CA431123 AA565244 AI978848 T09123 AI457901 BU687973 H20114 
    AA621728 AA856559 AW057542 AI366782 AA496520 BM695841 CA407259 BM672226 
    AK001207 BU159190 BI768044 CA446882 BE389993 AW137747 CR596175 CR604526 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ABHD16A expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AATGGATTAT
    ABHD16A Expression
    About this image


    See ABHD16A Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ABHD16A

    SOURCE GeneReport for Unigene cluster: Hs.388188
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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for ABHD16A gene from 6/15 species (see all 15)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Abhd16a1 , 5 abhydrolase domain containing 16A1, 5 90.62(n)1
    96.06(a)1
      17 (18.59 cM)5
    1937421  NM_178592.31  NP_848707.11 
     350892635 
    lizard
    (Anolis carolinensis)
    Reptilia ABHD16A6
    Uncharacterized protein
    79(a)
    1 ↔ 1
    GL343590.1(37675-78949)
    African clawed frog
    (Xenopus laevis)
    Amphibia bat5-prov2 HLA-B associated transcript 5 76.06(n)    BC047986.1 
    zebrafish
    (Danio rerio)
    Actinopterygii wufb55e012 Transcribed sequence with weak similarity to protein more 74.87(n)    57041978 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG13091 CG1309 52.19(n)
    44.62(a)
      38519  NM_139623.2  NP_647880.1 
    worm
    (Caenorhabditis elegans)
    Secernentea F37A4.11 Protein F37A4.1 46.86(n)
    37.44(a)
      175948  NM_066074.3  NP_498475.1 


    ENSEMBL Gene Tree for ABHD16A (if available)
    TreeFam Gene Tree for ABHD16A (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ABHD16A gene
    ABHD16B2  
    1 SIMAP similar gene for ABHD16A using alignment to 7 protein entries:     ABHGA_HUMAN (see all proteins):
    ABHD16B

    ABHD16A for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/341 SNPs in ABHD16A are shown (see all 341)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 6 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1853966261,2
    --31654254(+) GCTGCA/GTAAGA 4 -- ds50010--------
    rs1902931301,2
    --31654422(+) GCAGGA/CGGGGG 4 -- ds50010--------
    rs125244421,2
    C,F,H--31654448(+) GGGGTG/TGTTGT 4 -- ds50016Minor allele frequency- T:0.01NS EA NA 518
    rs22426541,2
    C,A,H--31654491(-) CCTCCC/TTGGCC 4 -- ds50013Minor allele frequency- T:0.14EA NA 1612
    rs795159061,2
    C--31654533(+) GGGACC/TGGGGA 4 -- ds50014Minor allele frequency- T:0.08CSA WA EA 241
    rs7079181,2
    C,F,O,A,H--31654732(-) CTATCA/TGGCTA 4 -- nc-transcript-variantut3135Minor allele frequency- T:0.44MN NS EA NA WA CSA 3766
    rs115521131,2
    C,F,H--31654799(+) TGTATG/ATTGGA 4 -- nc-transcript-variantut317Minor allele frequency- A:0.01NS EA NA 426
    rs102981,2
    C--31654884(+) CATTTA/CCACAA 4 -- nc-transcript-variantut31 ese30--------
    rs783052611,2
    C--31654887(+) TTCCAA/CAAACT 4 -- nc-transcript-variantut310--------
    rs1494455681,2
    C--31654925(+) CACAAA/GTAAGA 4 -- ut31 nc-transcript-variant0--------

    HapMap Linkage Disequilibrium report for ABHD16A (31654726 - 31671221 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 2 variations for ABHD16A:    About this table     
    Variant IDTypeSubtypePubMed ID
    nsv830627CNV Loss17160897
    nsv884418CNV Gain21882294

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    OMIM gene information: 142620    OMIM disorders: --

    7 diseases for ABHD16A:    About MalaCards
    coronary artery aneurysm    meningioma    systemic lupus erythematosus    lupus erythematosus
    rheumatoid arthritis    arthritis    leukemia


    ABHD16A for disorders           About GeneDecksing


    Export disorders for ABHD16A gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ABHD16A gene, integrated from 9 sources (see all 27):
    (articles sorted by number of sources associating them with ABHD16A)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Large-scale cDNA transfection screening for genes related to cancer development and progression. (PubMed id 15498874)1, 2 Wan D....Gu J. (2004)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    4. The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)1, 2 Mungall A.J.... Beck S. (2003)
    5. Analysis of the gene-dense major histocompatibility complex class III region and its comparison to mouse. (PubMed id 14656967)1, 2 Xie T.... Hood L. (2003)
    6. Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. (PubMed id 12665801)1, 2 Gevaert K.... Vandekerckhove J. (2003)
    7. A new cluster of genes within the human major histocompatibility complex. (PubMed id 2911734)1, 3 Spies T....Strominger J.L. (1989)
    8. Human major histocompatibility complex contains a minimum of 19 genes between the complement cluster and HLA-B. (PubMed id 2813433)1, 3 Spies T....Strominger J.L. (1989)
    9. Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PubMed id 23000965)1 Povlsen L.K....Choudhary C. (2012)
    10. A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (2011)

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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 7920 HGNC: 13921 AceView: BAT5 Ensembl:ENSG00000204427 euGenes: HUgn7920
    ECgene: ABHD16A H-InvDB: ABHD16A

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ABHD16A Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ABHD16A gene:
    Search GeneIP for patents involving ABHD16A

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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