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ABCF3 Gene

protein-coding   GIFtS: 52
GCID: GC03P183903

ATP-Binding Cassette, Sub-Family F (GCN20), Member 3

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
ATP-Binding Cassette, Sub-Family F (GCN20), Member 31 2
EST2018642
ATP-Binding Cassette Sub-Family F Member 32
EC 3.6.38
EC 3.6.3.178

External Ids:    HGNC: 721   Entrez Gene: 553242   Ensembl: ENSG000001612047   UniProtKB: Q9NUQ83   

Export aliases for ABCF3 gene to outside databases

Previous GC identifers: GC03U990120 GC03P185305 GC03P185224 GC03P185386 GC03P181310


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ABCF3 Gene:
ABCF3 (ATP-binding cassette, sub-family F (GCN20), member 3) is a protein-coding gene. GO annotations related to this gene include ATPase activity. An important paralog of this gene is ABCF1.

UniProtKB/Swiss-Prot: ABCF3_HUMAN, Q9NUQ8
Function: Displays an antiviral effect against flaviviruses such as west Nile virus (WNV) in the presence of OAS1B
(By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000003.11  NC_018914.2  NT_005612.17  
Regulatory elements:
   Regulatory transcription factor binding sites in the ABCF3 gene promoter:
         E2F-3a   E2F-4   E2F-5   Lmo2   E2F-2   FAC1   E2F   E2F-1   Sox9   SEF-1 (1)   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidABCF3 promoter sequence
   Search Chromatin IP Primers for ABCF3

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ABCF3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3q27.1   Ensembl cytogenetic band:  3q27.1   HGNC cytogenetic band: 3q27.1

ABCF3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ABCF3 gene location

GeneLoc information about chromosome 3         GeneLoc Exon Structure

GeneLoc location for GC03P183903:  view genomic region     (about GC identifiers)

Start:
183,903,811 bp from pter      End:
183,911,800 bp from pter
Size:
7,990 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: ABCF3_HUMAN, Q9NUQ8 (See protein sequence)
Recommended Name: ATP-binding cassette sub-family F member 3  
Size: 709 amino acids; 79745 Da
Caution: Lacks transmembrane domains and is probably not involved in transport
Sequence caution: Sequence=BAB14989.1; Type=Erroneous initiation;
Secondary accessions: A8K241 Q86UA2 Q8NAN1 Q96GS8 Q9H7A8
Alternative splicing: 2 isoforms:  Q9NUQ8-1   Q9NUQ8-2   

Explore the universe of human proteins at neXtProt for ABCF3: NX_Q9NUQ8

Explore proteomics data for ABCF3 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus
  • 3 DME Specific Peptides for ABCF3 (Q9NUQ8)
     NGAGKST  LLLLDEP  GENGAGKST 


    See ABCF3 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_060828.2  
    ENSEMBL proteins: 
     ENSP00000411471   ENSP00000415704   ENSP00000292808  

    ABCF3 Human Recombinant Protein Products:

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    OriGene Protein Over-expression Lysate for ABCF3
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    Novus Biologicals ABCF3 Protein
    Novus Biologicals ABCF3 Lysates
    Browse Sino Biological Recombinant Proteins
    Browse Sino Biological Cell Lysates
    Browse ProSpec Recombinant Proteins
    Cloud-Clone Corp. Proteins for ABCF3

     
    Search eBioscience for Proteins for ABCF3 

     
    antibodies-online proteins for ABCF3 (4 products) 

     
    antibodies-online peptides for ABCF3

    ABCF3 Antibody Products:

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    antibodies-online antibodies for ABCF3 (28 products) 

    ABCF3 Assay Products:

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    Cloud-Clone Corp. ELISAs for ABCF3
    Cloud-Clone Corp. CLIAs for ABCF3
    Search eBioscience for ELISAs for ABCF3 
    antibodies-online kits for ABCF3 (6 products) 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    ABCF: ATP binding cassette transporters / subfamily F

    4 InterPro protein domains:
     IPR003439 ABC_transporter-like
     IPR027417 P-loop_NTPase
     IPR003593 AAA+_ATPase
     IPR017871 ABC_transporter_CS

    Graphical View of Domain Structure for InterPro Entry Q9NUQ8

    ProtoNet protein and cluster: Q9NUQ8

    UniProtKB/Swiss-Prot: ABCF3_HUMAN, Q9NUQ8
    Similarity: Belongs to the ABC transporter superfamily. ABCF family. EF3 subfamily
    Similarity: Contains 2 ABC transporter domains


    Find genes that share domains with ABCF3           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ABCF3_HUMAN, Q9NUQ8
    Function: Displays an antiviral effect against flaviviruses such as west Nile virus (WNV) in the presence of OAS1B
    (By similarity)

         Genatlas biochemistry entry for ABCF3:
    ATP-binding cassette superfamily,subfamily F (GCN20),member 3

         Enzyme Numbers (IUBMB): EC 3.6.32 EC 3.6.3.172

         Gene Ontology (GO): 5 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000166nucleotide binding ----
    GO:0005515protein binding ----
    GO:0005524ATP binding IEA--
    GO:0016887ATPase activity IEA--
    GO:0017111nucleoside-triphosphatase activity ----
         
    Find genes that share ontologies with ABCF3           About GenesLikeMe


    Phenotypes:
         1 MGI phenotypic allele for Abcf3 (no phenotypes)

    Find genes that share phenotypes with ABCF3           About GenesLikeMe

    Animal Models:
         MGI mouse knock-out Abcf3tm1Lex for ABCF3

       genOway: Develop your customized and physiologically relevant rodent model for ABCF3

    miRNA
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    Block miRNA regulation of human, mouse, rat ABCF3 using miScript Target Protectors
    5 qRT-PCR Assays for microRNAs that regulate ABCF3:
    hsa-miR-4271 hsa-miR-625 hsa-miR-32* hsa-miR-1910 hsa-miR-455-3p
    SwitchGear 3'UTR luciferase reporter plasmidABCF3 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat ABCF3

    Gene Editing
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    OriGene ORF clones in mouse, rat for ABCF3
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
    GenScript: all cDNA clones in your preferred vector: ABCF3 (NM_018358)
    Sino Biological Human cDNA Clone for ABCF3
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for ABCF3
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ABCF3

    Cell Line
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    GenScript Custom overexpressing Cell Line Services for ABCF3
    Browse ESI BIO Cell Lines and PureStem Progenitors for ABCF3 
    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ABCF3


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol3
    nucleus2
    endosome1

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ABCF3
    Interactions:

        Search GeneGlobe Interaction Network for ABCF3

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    Selected Interacting proteins for ABCF3 (Q9NUQ82, 3 ENSP000004114714) via UniProtKB, MINT, STRING, and/or I2D (see all 973)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    HIST1H4AP628053I2D: score=1 
    HIST1H4BP628053I2D: score=1 
    HIST1H4CP628053I2D: score=1 
    HIST1H4DP628053I2D: score=1 
    HIST1H4EP628053I2D: score=1 
    About this table

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0051607defense response to virus IEA--

    Find genes that share ontologies with ABCF3           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ABCF3



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for ABCF3 gene: 
    NM_018358.2  

    Unigene Cluster for ABCF3:

    ATP-binding cassette, sub-family F (GCN20), member 3
    Hs.361323  [show with all ESTs]
    Unigene Representative Sequence: AK097073
    18 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000429586(uc003fmz.2 uc003fna.2 uc003fnb.2) ENST00000421340
    ENST00000485921 ENST00000463685 ENST00000478288 ENST00000292808 ENST00000473311
    ENST00000481116 ENST00000498136 ENST00000466416 ENST00000471226 ENST00000472608
    ENST00000475728 ENST00000489719 ENST00000468892 ENST00000466742 ENST00000480562
    ENST00000480539
    miRNA
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    5 qRT-PCR Assays for microRNAs that regulate ABCF3:
    hsa-miR-4271 hsa-miR-625 hsa-miR-32* hsa-miR-1910 hsa-miR-455-3p
    SwitchGear 3'UTR luciferase reporter plasmidABCF3 3' UTR sequence
    Inhib. RNA
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    OriGene RNAi products in human, mouse, rat for ABCF3
    Predesigned siRNA for gene silencing in human, mouse, rat ABCF3
    Clone
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    OriGene ORF clones in mouse, rat for ABCF3
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
    GenScript: all cDNA clones in your preferred vector: ABCF3 (NM_018358)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for ABCF3
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ABCF3
    Primer
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    OriGene qPCR primer pairs and template standards for ABCF3
    OriGene qSTAR qPCR primer pairs in human, mouse for ABCF3
    Pre-validated RT2 qPCR Primer Assay in human, mouse, rat ABCF3
      QuantiTect SYBR Green Assays in human, mouse, rat ABCF3
      QuantiFast Probe-based Assays in human, mouse, rat ABCF3

    Additional mRNA sequence: 

    AK002060.1 AK024758.1 AK027288.1 AK092415.1 AK097073.1 AK126150.1 AK290106.1 AK299256.1 
    AK299433.1 BC009253.2 BC035652.1 BC051754.2 BC051884.1 U66685.1 

    Selected DOTS entries (see all 26):

    DT.454980  DT.95108652  DT.95081940  DT.120902378  DT.95093818  DT.101978221  DT.92041725  DT.100813236 
    DT.100813243  DT.100028670  DT.100680191  DT.101973577  DT.91921330  DT.100813240  DT.95200399  DT.120902361 
    DT.120902384  DT.91821276  DT.120902373  DT.120902379  DT.120902369  DT.120902383  DT.86846368  DT.95086095 

    Selected AceView cDNA sequences (see all 296):

    BX446404 BM544115 AU132855 AK092415 AA308889 BU527515 BE272621 BI819233 
    BQ228746 BC051754 BE796411 AI014512 AK027288 AI184189 CR597756 BQ054758 
    CR607850 BI754618 BQ637237 BM920771 AW006676 BC009253 AW069632 BM925027 

    GeneLoc Exon Structure

    Selected Alternative Splicing Database (ASD) splice patterns (SP) for ABCF3 (see all 20)    About this scheme

    ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b · 2c ^ 3a · 3b ^ 4a · 4b · 4c · 4d ^ 5 ^ 6a · 6b · 6c · 6d ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^
    SP1:                                                  -     -           -     -                                                                                 
    SP2:                                      -           -     -           -     -                                                                                 
    SP3:                                                  -     -                                                                                                   
    SP4:                                                                                                                                                            
    SP5:                                                  -                 -     -                                                                                 

    ExUns: 14a · 14b · 14c · 14d ^ 15a · 15b · 15c ^ 16 ^ 17 ^ 18 ^ 19 ^ 20a · 20b ^ 21 ^ 22a · 22b
    SP1:                          -           -                                                         
    SP2:                          -           -                                                         
    SP3:                          -           -                                                         
    SP4:                          -           -                                                         
    SP5:                                                                                                


    ECgene alternative splicing isoforms for ABCF3

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ABCF3 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TAGGCCACCA
    ABCF3 Expression
    About this image


    ABCF3 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 4) fully expand
     
     Gut Tube (Gastrointestinal Tract)
             Foregut
     
     Head Mesenchyme (Muscoskeletal System)
             Head Mesenchyme
     
     Limb (Muscoskeletal System)
     
     Adrenal Gland (Endocrine System)
    ABCF3 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ABCF3 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.361323
        Custom PCR Arrays for ABCF3
    Primer
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    QuantiTect SYBR Green Assays in human, mouse, rat ABCF3
    QuantiFast Probe-based Assays in human, mouse, rat ABCF3
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ABCF3

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of eukaryotes.

    Orthologs for ABCF3 gene from Selected species (see all 26)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Abcf31 , 5 ATP-binding cassette, sub-family F (GCN20), member more1, 5 88.34(n)1
    96.9(a)1
      16 (12.46 cM)5
    274061  NM_013852.21  NP_038880.11 
     205485775 
    chicken
    (Gallus gallus)
    Aves ABCF31 ATP-binding cassette, sub-family F (GCN20), member more 76.45(n)
    83.36(a)
      424950  XM_004943397.1  XP_004943454.1 
    lizard
    (Anolis carolinensis)
    Reptilia ABCF36
    ATP-binding cassette, sub-family F (GCN20), member...
    81(a)
    1 ↔ 1
    GL343245.1(767337-789124)
    African clawed frog
    (Xenopus laevis)
    Amphibia LOC3985652 hypothetical protein LOC398565 72.99(n)    BC046370.1 
    zebrafish
    (Danio rerio)
    Actinopterygii LOC1003312271 ATP-binding cassette sub-family F member 3-like 74.37(n)
    77.26(a)
      100331227  XM_002667473.3  XP_002667519.2 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG93301 CG9330 59.62(n)
    57.74(a)
      40131  NM_140872.3  NP_649129.1 
    worm
    (Caenorhabditis elegans)
    Secernentea abcf-31 abcf-3 53.4(n)
    51.9(a)
      175873  NM_065938.5  NP_498339.1 
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes GCN20(YFR009W)4
    GCN201
    Positive regulator of the Gcn2p kinase activity, forms more4
    GCN201
    51.27(n)1
    47.8(a)1
      6(162488-164746)4
    8505611, 4  NP_116664.11, 4 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons GCN31 GCN3 49.98(n)
    43.02(a)
      842763  NM_105130.3  NP_176636.1 
    rice
    (Oryza sativa)
    Liliopsida Os.107582 Oryza sativa (japonica cultivar-group) cDNA cloneJ more 72.58(n)    AK099841.1 


    ENSEMBL Gene Tree for ABCF3 (if available)
    TreeFam Gene Tree for ABCF3 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ABCF3 gene
    ABCF12  
    2 SIMAP similar genes for ABCF3 using alignment to 2 protein entries:     ABCF3_HUMAN (see all proteins):
    ABCF1    ABCF2

    Find genes that share paralogs with ABCF3           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ABCF3 (see all 403)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 3 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1438522741,2
    Cuntested1183907655(+) TTGACC/TGGTTT 2 R W mis11Minor allele frequency- T:0.00NA 4552
    rs665784041,2
    C--183902703(+) AAATT-/AAAAAA 1 -- us2k11Minor allele frequency- A:0.50NA 2
    rs2021920361,2
    C--183902720(+) AAAAAA/GAATAT 1 -- us2k10--------
    rs64439541,2
    C,F,A,H--183902801(+) CCAGTC/TTGTGT 1 -- us2k127Minor allele frequency- T:0.44EA NS NA WA CSA 2273
    rs1859074691,2
    --183903020(+) ATGGTG/TCAATA 1 -- us2k10--------
    rs1509359641,2
    --183903203(+) AATAGC/TCTTTT 1 -- us2k10--------
    rs1908286901,2
    --183903284(+) GTCCTG/TGTTTT 1 -- us2k10--------
    rs1407562831,2
    C--183903518(+) AGCTCA/TGGGCA 1 -- us2k10--------
    rs1824245081,2
    --183903520(+) CTCTGC/GGCAGG 1 -- us2k10--------
    rs1501154221,2
    C--183903541(+) GGCCTA/GACTGG 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for ABCF3 (183903811 - 183911800 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 4 variations for ABCF3:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv829812CNV Loss17160897
    nsv878057CNV Loss21882294
    nsv878056CNV Loss21882294
    nsv878058CNV Gain21882294

    Site Specific Mutation Identification with PCR Assays
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    DNA2.0 Custom Variant and Variant Library Synthesis for ABCF3

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ABCF3 gene, integrated from 10 sources (see all 21):
    (articles sorted by number of sources associating them with ABCF3)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    3. Characterization of the human ABC superfamily: isolation and mapping of 21 new genes using the expressed sequence tags database. (PubMed id 8894702)1, 3 Allikmets R....Dean M. (Hum. Mol. Genet. 1996)
    4. Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases. (PubMed id 24250222)1 Satoh J....Yamamoto Y. (Gene Regul Syst Bio 2013)
    5. A mega-analysis of genome-wide association studies for major depressive disorder. (PubMed id 22472876)1  ....Sullivan P.F. (Mol. Psychiatry 2013)
    6. Proteome-wide identification of ubiquitylation sites by conjugation of engineered lysine-less ubiquitin. (PubMed id 22053931)1 Oshikawa K....Nakayama K.I. (J. Proteome Res. 2012)
    7. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (Cell 2012)
    8. Comparative large scale characterization of plant versus mammal proteins reveals similar and idiosyncratic N-I+-acetylation features. (PubMed id 22223895)2 Bienvenut W.V....Giglione C. (amp 2012)
    9. A high-throughput approach for measuring temporal changes in the interactome. (PubMed id 22863883)1 Kristensen A.R....Foster L.J. (Nat. Methods 2012)
    10. Proteomic identification of common SCF ubiquitin ligase FBXO6-interacting glycoproteins in three kinds of cells. (PubMed id 22268729)1 Liu B....Wang L.S. (J. Proteome Res. 2012)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 55324 HGNC: 72 AceView: ABCF3 Ensembl:ENSG00000161204 euGenes: HUgn55324
    ECgene: ABCF3 H-InvDB: ABCF3

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
    About This Section

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    NameDescription
    PharmGKB entry for ABCF3 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section

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    Patent Information for ABCF3 gene:
    Search GeneIP for patents involving ABCF3

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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