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ABCE1 Gene

protein-coding   GIFtS: 57

GC04P146238
ATP-binding cassette, sub-family E (OABP), member 1
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbols: RNASEL1, RNASELI, RNS4I)
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
ABC38 2
HuHP68 3
OABP 1, 2
RLI 1, 2, 3
RNASEL1 2, 3
RNASELI 2, 3, 5
RNS4I 2, 3, 5
Descriptions
2'-5'-oligoadenylate-binding protein 3
ATP-binding cassette, sub-family E (OABP), member 1 2
ATP-binding cassette, sub-family E, member 1 2
RNase L inhibitor 2, 3
Ribonuclease 4 inhibitor 3
ribonuclease L (2',5'-oligoisoadenylate
synthetase-dependent) inhibitor 2
External Ids
HGNC: 691
Entrez Gene: 60592
UniProtKB: P612213
Ensembl: ENSG000001641637
Search outside databases for aliases for ABCE1 gene

Previous GC identifers: GC04P146819 GC04P146391 GC04P146597 GC04P146377

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for ABCE1:
The protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC)
transporters. ABC proteins transport various molecules across extra- and intra-cellular membranes.
ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20,
White). This protein is a member of the OABP subfamily. Alternatively referred to as the RNase L
inhibitor, this protein functions to block the activity of ribonuclease L. Activation of
ribonuclease L leads to inhibition of protein synthesis in the 2-5A/RNase L system, the central
pathway for viral interferon action. Two transcript variants encoding the same protein have been
found for this gene. [provided by RefSeq]

UniProtKB/Swiss-Prot: ABCE1_HUMAN, P61221
Function: Antagonizes the binding of 2-5A (5'-phosphorylated 2',5'-linked oligoadenylates) by RNase
L through direct interaction with RNase L and therefore inhibits its endoribonuclease activity.
May play a central role in the regulation of mRNA turnover. Antagonizes the anti-viral effect of
the interferon-regulated 2-5A/RNase L pathway. May act as a chaperone for post-translational
events during HIV-1 capsid assembly

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the ABCE1 gene  

Entrez Gene cytogenetic band: 4q31   Ensembl cytogenetic band:  4q31.22   HGNC cytogenetic band: 4q31

ABCE1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04P146238:     (about GC identifiers)

Start:
146,238,606 bp from pter
End:
146,270,126 bp from pter
Size:
31,521 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000004.10  NT_016354.18  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: ABCE1_HUMAN, P61221 (See protein sequence)
Recommended Name: ATP-binding cassette sub-family E member 1  
Size: 599 amino acids; 67314 Da
Subunit: Probably heterodimerizes with RNase L. Associates with HIV-1 Vif and HIV-1, HIV-2 and SIV
Gag proteins
Subcellular location: Cytoplasm. Mitochondrion. Note=Localized to clusters of virus formation at
the plasma membrane
Miscellaneous: The ABC transporter domains seem not to be functional
Secondary accessions: O88793 Q13181 Q13864 Q6NR76 Q96AL0 Q96B10 Q99K66

REFSEQ proteins (2 alternative transcripts): 
NP_001035809.1  NP_002931.2  


ENSEMBL proteins: 
ENSP00000296577 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Browse Purified and Recombinant Proteins at Millipore
Browse Human Recombinant Proteins at Sigma-Aldrich  
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (ABCE1)
Human Recombinant Proteins from Abnova (ABCE1)
              OriGene Purified Recombinant Human Protein: ABCE1 

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005737 cytoplasm IDA11585831
GO:0005739 mitochondrion IDA11585831
About this table

Antibodies for ABCE1: 
Browse Antibodies Central at Invitrogen
Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
Browse Antibodies at Sigma-Aldrich
Browse R&D Systems for Antibodies
Antibodies from Abcam (ABCE1), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (ABCE1)
Novus Biologicals Antibodies for ABCE1

Assays for ABCE1: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

5/8 InterPro domains/families (see all 8 ):
 IPR003439 ABC_transporter-like
 IPR001450 4Fe4S_Fe_S_bd_subgr
 IPR003593 ATPase_AAA+_core
 IPR017896 4Fe4S_Fe-S-bd
 IPR017900 4Fe4S_Fe_S_CS


   GeneDecks  ABCE1 for the domains selected above  
About GeneDecksing

Graphical View of Domain Structure for InterPro Entry P61221

ProtoNet protein and cluster: P61221

2 Blocks protein families:
IPB007209 Possible metal-binding region in RNase L inhibitor
IPB013283 ABC transporter family E signature


UniProtKB/Swiss-Prot: ABCE1_HUMAN, P61221
Similarity: Belongs to the ABC transporter family. ABCE subfamily
Similarity: Contains 2 4Fe-4S ferredoxin-type domains
Similarity: Contains 2 ABC transporter domains

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (ABCE1)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (ABCE1)
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_002940

              Applied Biosystems Silencer® siRNAs for ABCE1

              Sigma-Aldrich siRNA for ABCE1  
                     Sigma-Aldrich shRNA for ABCE1  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Invitrogen Clones for ABCE1
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_001040876
                                 Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_001040876
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_001040876 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_002940

UniProtKB/Swiss-Prot: ABCE1_HUMAN, P61221
Function: Antagonizes the binding of 2-5A (5'-phosphorylated 2',5'-linked oligoadenylates) by RNase
L through direct interaction with RNase L and therefore inhibits its endoribonuclease activity.
May play a central role in the regulation of mRNA turnover. Antagonizes the anti-viral effect of
the interferon-regulated 2-5A/RNase L pathway. May act as a chaperone for post-translational
events during HIV-1 capsid assembly
Induction: Activated by encephalomyocarditis virus (EMCV) and HIV-1

Genatlas biochemistry entry for ABCE1:
ATP binding cassette superfamily,subfamilyE (OABP),member 1,ubiquitously expressed
1 MGI phenotypic allele for Abce1 (no phenotypes)

5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6 ):

GO IDQualified GO termEvidencePubMed IDs
GO:0000166 nucleotide binding IEA--
GO:0005524 ATP binding IEA--
GO:0008428 ribonuclease inhibitor activity TAS7539425
GO:0009055 electron carrier activity IEA--
GO:0016887 ATPase activity IEA--
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section


 Gene Network CentralTM Interacting Genes and Proteins Network for  ABCE1 


5/14 Interacting proteins for ABCE1 (ENSP000002965773) via UniProtKB, MINT, and/or STRING (see all 14 )
InteractantInteraction Details
GeneCardExternal ID(s)
RNASELENSP000003565303STRING (score=.979)
RALAENSP000000052573STRING (score=.949)
EIF5ENSP000002165543STRING (score=.894)
UBASH3AENSP000003173273STRING (score=.883)
CDC42P2ENSP000003144583STRING (score=.864)
About this table

3 Gene Ontology (GO) biological process terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0006401 RNA catabolic process TAS7539425
GO:0009615 response to virus TAS7539425
GO:0044419 interspecies interaction between organisms IEA--
About this table
(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for ABCE1

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (ABCE1)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (ABCE1)
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_002940

              Sigma-Aldrich siRNA for ABCE1  
                     Sigma-Aldrich shRNA for ABCE1  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_001040876  NM_002940  

REFSEQ mRNAs for ABCE1 gene (2 alternative transcripts): 

NM_001040876.1   NM_002940.2   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_001040876  NM_002940  

               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_001040876
                                 Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_001040876
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_001040876 

Additional cDNA sequence: 

AB062293.1 AK123593.1 AK315198.1 BC016283.1 BC016988.1 BT009779.1 CR620765.1 X74987.1 
X76388.1 

13 DOTS entries:

DT.448327  DT.92453076  DT.101977083  DT.95306496  DT.121341907  DT.100800662  DT.100800665  DT.99981971 
DT.121275165  DT.121427773  DT.95306494  DT.99928359  DT.121275160 

24/351 AceView cDNA sequences (see all 351 ):

BX459627 AI038729 BP337846 AK123593 AW518047 CA430799 BM785780 BM560736 
AI669521 BX116792 BX489818 BM833583 AI478885 BM453111 BM974936 AI469405 
BM803662 AU119568 BU508771 BU686342 T34234 BU616894 AA337780 AI191936 

highest scoring ESTs for ABCE1:

X76388 AA191423 AA223912 AA386026 AA452223 AA576750 AA641324 AA644303 AA680062 AA715626 

Unigene Cluster for ABCE1:

ATP-binding cassette, sub-family E (OABP), member 1
Hs.12013  [show with all ESTs]
Unigene Representative Sequence: NM_002940


GeneLoc Exon Structure

5/8 Alternative Splicing Database (ASD) splice patterns (SP) for ABCE1 (see all 8 )

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15a · 15b · 15c ^ 16 ^ 17a · 17b ^ 18
SP1:                                                                                      -                 -     -     -                       -         
SP2:                                                                                                                                                      
SP3:                                                              -                                                                                       
SP4:                                                                                                              -     -                       -         
SP5:                          -     -     -     -     -     -     -     -     -           -                                                               

About this scheme

ECgene alternative splicing isoforms for ABCE1

1 Ensembl transcript including schematic representation:
ENST00000296577  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

ABCE1 expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for ABCE1

1 / 2 / 3

5 probe-sets matching ABCE1 gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

39355_at2, 3 U95-A 1 1.00 1.00 1.00 1.00 X76388 1.00 1.00 1.00 1

201873_s_at2, 3 U133-A 1 1.00 1.00 -- -- NM_002940 0.60 1.00 0.82 1

201872_s_at2, 3 U133-A 3 1.00 0.48 -- -- AI002002 0.80 1.00 0.91 1

201873_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

201872_s_at2 U133Plus2 3 1.00 0.48 -- -- -- -- -- -- --
About this table
Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: --

SOURCE GeneReport for Unigene cluster: Hs.12013

Expression variation in blood from EXPOLDB for ABCE1

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for ABCE1 gene from 5/27 species (see all 27 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
ABCE11   -- ATP-binding cassette, sub-family E (OABP), member 1 95.16(n)
99.83(a)
475454  XM_532679.2  XP_532679.2 
chimpanzee
(Pan troglodytes)
ABCE11   -- ATP-binding cassette, sub-family E (OABP), member 1 99.89(n)
100(a)
461523  XM_517465.2  XP_517465.1 
cow
(Bos taurus)
ABCE11   -- ATP-binding cassette, sub-family E (OABP), member 1 94.38(n)
99.83(a)
514991  XM_592921.3  XP_592921.3 
rat
(Rattus norvegicus)
Abce11   -- ATP-binding cassette, sub-family E (OABP), member 1 91.43(n)
99.83(a)
361390  XM_001064797.1  XP_001064797.1 
mouse
(Mus musculus)
Abce11, 5 85
ATP-binding cassette, sub-family E (OABP), member 11, 5 93.04(n)1
100(a)1
240151  NM_015751.21  NP_056566.21 
 AK0492995  AK0882655  (see all 25)
About this table        Species with no ortholog for ABCE1

ENSEMBL Gene Tree for ABCE1
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

  --
(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/147 NCBI SNPs in ABCE1 are shown (see all 147 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 118)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 4 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
--
rs170198971,2
C,F,H146269233(+) GAGTTC/GCTGAA 2 -- ut31 ese39Minor allele frequency- G:0.01NA EU EA WA NS 638
rs41482351,2
F,H146268185(+) ACTCTG/CAGAAT 2 -- ut31 ese34Minor allele frequency- C:0.01EU EA WA 410
--
rs65373301,2
C146270253(+) TGGGGG/TTTTTT 2 -- ng310--------
--
rs93335711,2
F146268599(+) AAGCCAGTC/-  
        
AAAGA
2 -- ut311Minor allele frequency- -:0.01EU 250
rs345167221,2
F146269952(+) ACTTAT/CAAAAT 2 -- ut312Minor allele frequency- C:0.02NS 90
rs354060921,2
F146252856(+) GATGAG/ACCTTC 2 E/E syn12Minor allele frequency- A:0.02NS 88
rs340708771,2
F146263867(+) CTTTGC/TTTGGG 2 C/C syn12Minor allele frequency- T:0.03NS 94
rs68523901,2
A,C,F,H146245661(+) ACTGAC/ATCTTA 2 -- int16Minor allele frequency- A:0.00EU EA WA NS 506
rs76818121,2
A,C,F,H146260959(+) TAGTTC/ATTATT 2 -- int16Minor allele frequency- A:0.03EU EA WA NS 510
rs100190911,2
C,F,H146254064(+) ACTTTT/CATggt 2 -- int16Minor allele frequency- C:0.04EU EA WA NS 494
About this table

HapMap Linkage Disequilibrium images for ABCE1 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 601213

Human Genome Epidemiology Navigator: ABCE1 (2 documents)

(Possibly Related Articles in Doctor's Guide)
About This Section

  --

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
About This Section

10/23 PubMed articles for ABCE1 gene (see all 23 ):
(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 6059 HGNC: 69 AceView: ABCE1 Ensembl:ENSG00000164163 euGenes: HUgn6059
ECgene: ABCE1 H-InvDB: ABCE1
(According to HUGE)
About This Section

  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

NameDescription
SeattleSNPshttp://pga.gs.washington.edu/data/abce1/
(Available from WIS Yeda, Salk, Tufts)
About This Section

  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for ABCE1:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



  Invitrogen iPath Pathways  Invitrogen BLOCK-iT™ RNAi
  Invitrogen Antibodies  Invitrogen Assays
  Invitrogen Clones  Invitrogen Q-PCR Products
  Invitrogen Human Recombinant Kinases  Invitrogen Custom Antibody and Peptide Service
  Invitrogen Proteins / Assays / Screening Services  Search Invitrogen catalog for ABCE1-related products

 Millipore Custom Antibody & Bulk Services
 Millipore Preclinical / Clinical Development Services
 Millipore Immunoassay Services
 Millipore Target Screening & Profiling Services


 Predesigned and custom siRNAs for ABCE1 Browse antibodies at Sigma-Aldrich
 Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
 Lentivirus-delivered shRNAs for ABCE1 Browse small molecules at Sigma-Aldrich
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 Tagged/untagged cDNA clones
 Validated SYBR primer pairs
 Purified proteins from HEK293T cells
 Western blot validated antibodies
 shRNA in GFP-retroviral vector
 Search Tocris compounds for ABCE1




 Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
 Antibodies for ABCE1

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