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Aliases & Descriptions for ABCD1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| ABC42 2 | | ALD 2, 3, 5 | | ALDP 1, 2, 3 | | AMN 1, 2, 5 | | OTTHUMP00000025960 2 | | adrenoleukodystrophy 1 |
| | | Descriptions |
|---|
| ATP-binding cassette, sub-family D (ALD), member 1 2 | | ATP-binding cassette, sub-family D, member 1 1 | | Adrenoleukodystrophy protein 2, 3 |
|
| | Search outside databases for aliases for ABCD1 genePrevious GC identifers: GC0XP147127 GC0XP149445 GC0XP150576 GC0XP151458 GC0XP152511 |
Summaries for ABCD1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for ABCD1: The protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC) transporters. ABC proteins transport various molecules across extra- and intra-cellular membranes. ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, White). This protein is a member of the ALD subfamily, which is involved in peroxisomal import of fatty acids and/or fatty acyl-CoAs in the organelle. All known peroxisomal ABC transporters are half transporters which require a partner half transporter molecule to form a functional homodimeric or heterodimeric transporter. This peroxisomal membrane protein is likely involved in the peroxisomal transport or catabolism of very long chain fatty acids. Defects in this gene have been identified as the underlying cause of adrenoleukodystrophy, an X-chromosome recessively inherited demyelinating disorder of the nervous system. [provided by RefSeq] UniProtKB/Swiss-Prot: ABCD1_HUMAN, P33897Function: Probable transporter. The nucleotide-binding fold acts as an ATP-binding subunit with ATPase activityGene Wiki entry for ABCD1 |
Genomic Location for ABCD1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the ABCD1 gene 
Entrez Gene cytogenetic band: Xq28 Ensembl cytogenetic band: Xq28 HGNC cytogenetic band: Xq28ABCD1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome X GeneLoc Exon Structure GeneLoc location for GC0XP152643:
(about GC identifiers)
Start:
|
152,643,517 bp from pter |
End:
|
152,663,410 bp from pter |
Size:
|
19,894 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000023.9 NT_011726.13
| Proteins for ABCD1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: ABCD1_HUMAN, P33897 (See
protein sequence)Recommended Name: ATP-binding cassette sub-family D member 1 Size: 745 amino acids; 82937 Da
Subunit: Can form homo- and heterodimers with ABCD2/ALDR and ABCD3/PMP70. Dimerization is necessary to form an active transporter. Interacts with PEX19
Subcellular location: Peroxisome membrane; Multi-pass membrane protein
Secondary accessions: Q6GTZ2Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_000024.2
ENSEMBL proteins: ENSP00000218104 ENSP00000359147
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for ABCD1: Assays for ABCD1: | Protein
Domains/ Families for ABCD1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P33897
ProtoNet protein and cluster: P33897 1 Blocks protein family: IPB010509 ABC transporter
UniProtKB/Swiss-Prot: ABCD1_HUMAN, P33897Similarity: Belongs to the ABC transporter family. ALD subfamilySimilarity: Contains 1 ABC transmembrane type-1 domainSimilarity: Contains 1 ABC transporter domain | Gene Function for ABCD1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000033
Applied Biosystems Silencer® siRNAs for ABCD1
Sigma-Aldrich siRNA and siRNA Panels for ABCD1  Sigma-Aldrich shRNA for ABCD1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000033                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000033                                  untagged cDNA clone in CMV expression vector: NM_000033 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000033
UniProtKB/Swiss-Prot: ABCD1_HUMAN, P33897Function: Probable transporter. The nucleotide-binding fold acts as an ATP-binding subunit with ATPase activityGenatlas biochemistry entry for ABCD1:ATP-binding cassette superfamily,subfamily D (ALD),member 1,peroxisomal membrane protein,enhancing the association of very long chain acyl-CoA synthethase with the peroxisome8 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Abcd1):
5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6
): About this table | Pathways & Interactions for ABCD1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for ABCD1 
5/32 Interacting proteins for ABCD1 (ENSP000002181043 P338971) via UniProtKB, MINT, and/or STRING (see all 32
)About this table
3 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for ABCD1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for ABCD1 10 Novoseek chemical compound relationships for ABCD1 gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| lignoceric acid |
74.99 |
4 |
9007322 (2), 9799802 (1) |
| fatty acid |
64.51 |
21 |
2015112 (2), 18491823 (1), 9051655 (1), 16223892 (1) (see all 14) |
| acyl-coa |
58.19 |
3 |
9173925 (2), 10068511 (1) |
| manganese superoxide |
24.36 |
1 |
16319717 (1) |
| atp |
19.64 |
18 |
16946495 (3), 12530690 (2), 11248239 (2), 9425230 (1) (see all 10) |
| lipid |
10.11 |
4 |
17973979 (1), 2015112 (1), 17881773 (1), 17532287 (1) |
| forskolin |
0.00 |
1 |
9610777 (1) |
| cholesterol |
0.00 |
2 |
16213491 (1), 17881773 (1) |
| adp |
0.00 |
1 |
16946495 (1) |
| proline |
0.00 |
1 |
15192815 (1) |
About this table
|
Transcripts for ABCD1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000033
Sigma-Aldrich siRNA and siRNA Panels for ABCD1  Sigma-Aldrich shRNA for ABCD1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_000033 REFSEQ mRNAs for ABCD1 gene: NM_000033.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000033               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000033                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000033                                  untagged cDNA clone in CMV expression vector: NM_000033  Additional cDNA sequence: AY421736.1 AY421737.1 AY421738.1 BC015541.1 BC025358.1 CR590818.1 CR599919.1 Z21876.1 9 DOTS entries: DT.100775286 DT.438401 DT.97780533 DT.91751960 DT.99946409 DT.100698232 DT.121309356 DT.121309416 DT.95174234 24/167 AceView cDNA sequences (see all 167
):AA617973 BQ002137 CA395588 BX281679 BQ945290 NM_000033 BQ689178 BQ051707 BQ233874 BE280899 BX382184 BX379103 D31532 Z21876 BM743389 CR599919 BE546548 BF111256 BM744752 BC015541 BC025358 CR590818 BU188300 BM459113
highest scoring ESTs for ABCD1:AI762804 AA354923 AA617973 AA758000 AI082239 AI356337 AI871975 AL135144 AW960070 BC015541 Unigene Cluster for ABCD1: ATP-binding cassette, sub-family D (ALD), member 1 Hs.159546 [show with all ESTs]Unigene Representative Sequence: NM_000033
GeneLoc Exon Structure
5 Alternative Splicing Database (ASD) splice patterns (SP) for ABCD1
| ExUns: | 1a | · | 1b | ^ | 2a | · | 2b | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10a | · | 10b | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14a | · | 14b | |
| SP1: | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for ABCD1
2 Ensembl transcripts including schematic representations: ENST00000218104
ENST00000370129
|
Expression for ABCD1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| ABCD1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for ABCD1
1 / 2 / 3 4 probe-sets matching ABCD1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TTCCCAGCTC
SOURCE GeneReport for Unigene cluster: Hs.159546
Expression variation in blood from EXPOLDB for ABCD1 |
Orthologs for ABCD1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ABCD1 gene from 5/10 species (see all 10
)
| Organism |
Gene |
Locus |
Description |
Human Similarity |
NCBI accessions |
dog (Canis familiaris) |
ABCD11 |
-- |
ATP-binding cassette, sub-family D (ALD), member 1 |
89.77(n) 92.6(a) |
612520 XM_850248.1 XP_855341.1 |
cow (Bos taurus) |
ABCD11 |
-- |
ATP-binding cassette, sub-family D (ALD), member 1 |
88.48(n) 91.53(a) |
515178 NM_001046190.1 NP_001039655.1 |
rat (Rattus norvegicus) |
Abcd11 |
-- |
ATP-binding cassette, sub-family D (ALD), member 1 |
86.48(n) 91.53(a) |
363516 XM_343840.3 XP_343841.1 |
mouse (Mus musculus) |
Abcd11, 5 |
X (29.50 cM)5
|
ATP-binding cassette, sub-family D (ALD), member 11, 5 |
86.61(n)1 92.08(a)1 |
116661 NM_007435.11 NP_031461.11 AA0077555 AF1330935 (see all 19) |
zebrafish (Danio rerio) |
zgc:1721021 |
-- |
zgc:172102 |
67.82(n) 69.9(a) |
566367 NM_001111186.1 NP_001104656.1 |
About this table Species with no ortholog for ABCD1
ENSEMBL Gene Tree for ABCD1 | Paralogs for ABCD1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for ABCD1 gene
- ABCD32 ENSG000002143302 ABCD42 ABCD22
|
SNPs/Variants for ABCD1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for ABCD1 (up to first 250kb)
|
Disorders & Mutations for ABCD1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 300371 disorders: 300100 300100 UniProtKB/Swiss-Prot: ABCD1_HUMAN, P33897
Defects in ABCD1 are the cause of adrenoleukodystrophy X-linked (X-ALD) [MIM:300100]. X-ALD is a peroxisomal metabolic disorder characterized by progressive multifocal demyelination of the central nervous system and by peripheral adrenal insufficiency (Addison disease). It results in mental deterioration, corticospinal tract dysfunction, and cortical blindness. Different clinical manifestations exist like: cerebral childhood ALD (CALD), adult cerebral ALD (ACALD), adrenomyeloneuropathy (AMN) and "Addison disease only" (ADO) phenotype Microdeletions in ABCD1 are involved in the contiguous ABCD1/DXS1375E deletion syndrome (CADDS) [MIM:300475]. Patients manifest profound neonatal hypotonia, subsequent failure to thrive, and cholestatic liver disease9 Novoseek disease relationships for ABCD1 gene
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| adrenoleukodystrophy |
98.64 |
185 |
16087056 (3), 17662307 (3), 17609205 (3), 8892025 (2) (see all 97) |
| peroxisomal disorders |
90.70 |
7 |
15643618 (1), 18491823 (1), 9195223 (1), 7919919 (1) (see all 7) |
| demyelination |
71.11 |
7 |
9173925 (2), 9195223 (1), 10319888 (1), 17532287 (1) (see all 6) |
| demyelinating diseases |
68.08 |
14 |
9607414 (1), 8577752 (1), 11706205 (1), 9266848 (1) (see all 9) |
| adrenal dysfunction |
61.45 |
1 |
17202797 (1) |
| addisons disease |
61.11 |
3 |
17532287 (2), 7717396 (1) |
| neurodegenerative diseases |
60.34 |
17 |
17686565 (1), 18973459 (1), 11422379 (1), 11063720 (1) (see all 11) |
| metabolic disorder |
22.26 |
4 |
18723473 (2) |
| multiple sclerosis |
0.00 |
1 |
11688182 (1) |
About this table
GeneTests: ABCD1 Adrenoleukodystrophy Human Gene Mutation Database: ABCD1 Human Genome Epidemiology Navigator: ABCD1 (3 documents)
|
Medical News for ABCD1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for ABCD1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/175 PubMed articles for ABCD1 gene (see all 175
):- Putative X-linked adrenoleukodystrophy gene shares unexpected homology with ABC transporters. (PubMed id 8441467)2, 3, 4 Mosser J.... Aubourg P. (1993)
- Mutational and protein analysis of patients and heterozygous women with X-linked adrenoleukodystrophy. (PubMed id 8651290)1, 3, 4 Feigenbaum V.... Aubourg P. (1996)
- Contiguous deletion of the X-linked adrenoleukodystrophy gene (ABCD1) and DXS1357E: a novel neonatal phenotype similar to peroxisomal biogenesis disorders. (PubMed id 11992258)1, 3, 4 Corzo D.... Steinberg S.J. (2002)
- Characterisation of two mutations in the ABCD1 gene leading to low levels of normal ALDP. (PubMed id 11810273)1, 3, 4 Guimaraes C.P....Azevedo J.E. (2001)
- Eight novel ABCD1 gene mutations and three polymorphisms in patients with X-linked adrenoleukodystrophy: the first polymorphism causing an amino acid exchange. (PubMed id 11438993)1, 3, 4 Dvorakova L.... Berger J. (2001)
- Characterization and functional analysis of the nucleotide binding fold in human peroxisomal ATP binding cassette transporters. (PubMed id 11248239)1, 3, 4 Roerig P.... Gaertner J. (2001)
- Identification of seven novel mutations in ABCD1 by a DHPLC-based assay in Italian patients with X-linked adrenoleukodystrophy. (PubMed id 15643618)1, 3, 4 Montagna G.... Santorelli F.M. (2005)
- ABCD1 mutations and the X-linked adrenoleukodystrophy mutation database: role in diagnosis and clinical correlations. (PubMed id 11748843)1, 3, 4 Kemp S.... Moser H.W. (2001)
- Detection of mutations in the ALD gene (ABCD1) in seven Italian families: description of four novel mutations. (PubMed id 10980539)1, 3, 4 Lira M.G.... Salviati A. (2000)
- Human adrenoleukodystrophy protein and related peroxisomal ABC transporters interact with the peroxisomal assembly protein PEX19p. (PubMed id 10777694)1, 3, 4 Gloeckner C.J.... Roscher A.A. (2000)
|
Search for ABCD1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing ABCD1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing ABCD1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ABCD1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| X-ALD gene mutation database | http://www.x-ald.nl/ | | GeneReviews | http://www.genetests.org/query?gene=ABCD1 |
|
| | | About This Section
| --
| Services for ABCD1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for ABCD1:

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Incremental update: 13 Oct 2009
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