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Aliases for ABCC6P1 Gene

Aliases for ABCC6P1 Gene

  • ATP Binding Cassette Subfamily C Member 6 Pseudogene 1 2 3 5
  • ATP-Binding Cassette, Sub-Family C, Member 6 Pseudogene 1 (Functional) 2
  • ATP Binding Cassette Subfamily C Member 6 Pseudogene 1 (Functional) 2
  • ATP-Binding Cassette, Sub-Family C, Member 6 Pseudogene 1 2

External Ids for ABCC6P1 Gene

Previous GeneCards Identifiers for ABCC6P1 Gene

  • GC16P018491
  • GC16M015856

Summaries for ABCC6P1 Gene

GeneCards Summary for ABCC6P1 Gene

ABCC6P1 (ATP Binding Cassette Subfamily C Member 6 Pseudogene 1) is a Pseudogene.

Additional gene information for ABCC6P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ABCC6P1 Gene

Genomics for ABCC6P1 Gene

Regulatory Elements for ABCC6P1 Gene


Promoters for ABCC6P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000084088 238 801

Genomic Location for ABCC6P1 Gene

Chromosome:
16
Start:
18,571,162 bp from pter
End:
18,598,328 bp from pter
Size:
27,167 bases
Orientation:
Plus strand

Genomic View for ABCC6P1 Gene

Genes around ABCC6P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ABCC6P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ABCC6P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ABCC6P1 Gene

Proteins for ABCC6P1 Gene

Post-translational modifications for ABCC6P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ABCC6P1 Gene

Domains & Families for ABCC6P1 Gene

Gene Families for ABCC6P1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ABCC6P1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ABCC6P1 Gene

Function for ABCC6P1 Gene

Phenotypes From GWAS Catalog for ABCC6P1 Gene

Phenotypes for ABCC6P1 Gene

GenomeRNAi human phenotypes for ABCC6P1:
genes like me logo Genes that share phenotypes with ABCC6P1: view

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for ABCC6P1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ABCC6P1 Gene

Localization for ABCC6P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ABCC6P1 Gene

Pathways & Interactions for ABCC6P1 Gene

SuperPathways for ABCC6P1 Gene

No Data Available

Interacting Proteins for ABCC6P1 Gene

Gene Ontology (GO) - Biological Process for ABCC6P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ABCC6P1 Gene

Drugs & Compounds for ABCC6P1 Gene

No Compound Related Data Available

Transcripts for ABCC6P1 Gene

mRNA/cDNA for ABCC6P1 Gene

(4) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ABCC6P1 Gene

ATP-binding cassette, sub-family C, member 6 pseudogene 1:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for ABCC6P1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for ABCC6P1 Gene

No ASD Table

Relevant External Links for ABCC6P1 Gene

GeneLoc Exon Structure for
ABCC6P1
ECgene alternative splicing isoforms for
ABCC6P1

Expression for ABCC6P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ABCC6P1 Gene

mRNA differential expression in normal tissues according to GTEx for ABCC6P1 Gene

This gene is overexpressed in Liver (x32.8) and Kidney - Cortex (x5.1).

NURSA nuclear receptor signaling pathways regulating expression of ABCC6P1 Gene:

ABCC6P1

SOURCE GeneReport for Unigene cluster for ABCC6P1 Gene:

Hs.13188
genes like me logo Genes that share expression patterns with ABCC6P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ABCC6P1 Gene

Orthologs for ABCC6P1 Gene

Evolution for ABCC6P1 Gene

ENSEMBL:
Gene Tree for ABCC6P1 (if available)
TreeFam:
Gene Tree for ABCC6P1 (if available)

No data available for Orthologs for ABCC6P1 Gene

Paralogs for ABCC6P1 Gene

No data available for Paralogs for ABCC6P1 Gene

Variants for ABCC6P1 Gene

Sequence variations from dbSNP and Humsavar for ABCC6P1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000310213 -- 18,598,224(+) CTTTT(A/G)GTGCC nc-transcript-variant
rs1000376073 -- 18,574,164(+) GTCAT(A/G)ACATA intron-variant
rs1000381984 -- 18,585,694(+) CAGTA(C/G)AGGTA intron-variant
rs1000484701 -- 18,591,850(+) CACTG(C/T)ACTCT intron-variant
rs1000813127 -- 18,592,992(+) TCAGC(C/T)TCCTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ABCC6P1 Gene

Variant ID Type Subtype PubMed ID
dgv2781n100 CNV gain+loss 25217958
dgv2782n100 CNV loss 25217958
dgv2783n100 CNV gain 25217958
dgv2784n100 CNV gain 25217958
dgv2785n100 CNV gain 25217958
dgv2786n100 CNV gain+loss 25217958
esv2421404 CNV deletion 20811451
esv2751550 CNV gain 17911159
esv2758634 CNV gain+loss 17122850
esv2760417 CNV loss 21179565
esv2762176 CNV gain+loss 21179565
esv34419 CNV gain 17911159
esv3582069 CNV loss 25503493
esv3584704 CNV loss 24956385
esv3638110 CNV loss 21293372
esv3638111 CNV gain 21293372
esv3638112 CNV loss 21293372
nsv1043239 CNV gain 25217958
nsv1049975 CNV loss 25217958
nsv1160365 CNV duplication 26073780
nsv1160366 OTHER complex 26073780
nsv1160367 CNV duplication 26073780
nsv428320 CNV loss 18775914
nsv442712 CNV gain+loss 18776908
nsv514796 CNV gain 21397061
nsv7278 OTHER inversion 18451855
nsv833160 CNV gain 17160897
nsv9381 CNV gain 18304495
nsv978101 CNV duplication 23825009
nsv984283 CNV duplication 23825009

Relevant External Links for ABCC6P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ABCC6P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ABCC6P1 Gene

Disorders for ABCC6P1 Gene

Relevant External Links for ABCC6P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ABCC6P1

No disorders were found for ABCC6P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ABCC6P1 Gene

Publications for ABCC6P1 Gene

  1. Copy number variations of the ATP-binding cassette transporter ABCC6 gene and its pseudogenes. (PMID: 22873774) Kringen MK … Piehler AP (BMC research notes 2012) 2 3 60
  2. The human ABC transporter pseudogene family: Evidence for transcription and gene-pseudogene interference. (PMID: 18405356) Piehler AP … Kaminski WE (BMC genomics 2008) 2 3 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for ABCC6P1 Gene

Sources for ABCC6P1 Gene

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