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Aliases for ABCC6P1 Gene

Aliases for ABCC6P1 Gene

  • ATP-Binding Cassette, Sub-Family C, Member 6 Pseudogene 1 (Functional) 2 3
  • ATP-Binding Cassette, Sub-Family C, Member 6 Pseudogene 1 2

External Ids for ABCC6P1 Gene

Summaries for ABCC6P1 Gene

GeneCards Summary for ABCC6P1 Gene

ABCC6P1 (ATP-Binding Cassette, Sub-Family C, Member 6 Pseudogene 1 (Functional)) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ABCC6P1 Gene

Genomics for ABCC6P1 Gene

Genomic Location for ABCC6P1 Gene

Start:
18,571,162 bp from pter
End:
18,598,328 bp from pter
Size:
27,167 bases
Orientation:
Plus strand

Genomic View for ABCC6P1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ABCC6P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ABCC6P1 Gene

Regulatory Elements for ABCC6P1 Gene

Proteins for ABCC6P1 Gene

Post-translational modifications for ABCC6P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ABCC6P1 Gene

Domains for ABCC6P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ABCC6P1 Gene

Function for ABCC6P1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ABCC6P1 Gene

Localization for ABCC6P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ABCC6P1 Gene

Pathways for ABCC6P1 Gene

SuperPathways for ABCC6P1 Gene

No Data Available

Interacting Proteins for ABCC6P1 Gene

Gene Ontology (GO) - Biological Process for ABCC6P1 Gene

None

No data available for Pathways by source for ABCC6P1 Gene

Transcripts for ABCC6P1 Gene

mRNA/cDNA for ABCC6P1 Gene

(4) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ABCC6P1 Gene

ATP-binding cassette, sub-family C, member 6 pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ABCC6P1 Gene

No ASD Table

Relevant External Links for ABCC6P1 Gene

GeneLoc Exon Structure for
ABCC6P1
ECgene alternative splicing isoforms for
ABCC6P1

Expression for ABCC6P1 Gene

mRNA expression in normal human tissues for ABCC6P1 Gene

mRNA differential expression in normal tissues according to GTEx for ABCC6P1 Gene

This gene is overexpressed in Liver (32.8) and Kidney - Cortex (5.1).

SOURCE GeneReport for Unigene cluster for ABCC6P1 Gene Hs.13188

genes like me logo Genes that share expressions with ABCC6P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for ABCC6P1 Gene

Orthologs for ABCC6P1 Gene

Evolution for ABCC6P1 Gene

ENSEMBL:
Gene Tree for ABCC6P1 (if available)
TreeFam:
Gene Tree for ABCC6P1 (if available)

No data available for Orthologs for ABCC6P1 Gene

Paralogs for ABCC6P1 Gene

No data available for Paralogs for ABCC6P1 Gene

Variants for ABCC6P1 Gene

Sequence variations from dbSNP and Humsavar for ABCC6P1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs3691 -- 18,597,967(-) GAGAC(A/T)GTGCC nc-transcript-variant
rs2078081 -- 18,596,924(+) AAGAA(C/T)GCCAA nc-transcript-variant
rs2238468 -- 18,588,242(+) ATTTT(C/T)GTATT intron-variant
rs3021042 -- 18,572,344(-) GAttt(A/G)ttttt intron-variant
rs4780612 -- 18,590,550(-) TGATT(C/G)TCCCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ABCC6P1 Gene

Variant ID Type Subtype PubMed ID
nsv7278 OTHER Inversion 18451855
esv2751550 CNV Gain 17911159
esv587 CNV CNV 17122850
dgv822e1 CNV Complex 17122850
dgv823e1 CNV Complex 17122850
dgv2633n71 CNV Gain 21882294
nsv428320 CNV Loss 18775914
nsv905522 CNV Gain 21882294
dgv824e1 CNV Complex 17122850
esv34419 CNV Gain 17911159
nsv905537 CNV Gain 21882294
nsv833160 CNV Gain 17160897
essv8865 CNV CNV 17122850
dgv825e1 CNV Complex 17122850
dgv2636n71 CNV Loss 21882294
dgv2637n71 CNV Loss 21882294
esv2421404 CNV Deletion 20811451
nsv905540 CNV Gain 21882294
dgv2638n71 CNV Gain+Loss 21882294
nsv442712 CNV CNV 18776908
nsv9381 CNV Gain 18304495
dgv2639n71 CNV Loss 21882294
nsv514796 CNV Complex 21397061

Relevant External Links for ABCC6P1 Gene

HapMap Linkage Disequilibrium report
ABCC6P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ABCC6P1 Gene

Disorders for ABCC6P1 Gene

No disorders were found for ABCC6P1 Gene.

No data available for UniProtKB/Swiss-Prot for ABCC6P1 Gene

Publications for ABCC6P1 Gene

  1. The human ABC transporter pseudogene family: Evidence for transcription and gene-pseudogene interference. (PMID: 18405356) Piehler A.P. … Kaminski W.E. (BMC Genomics 2008) 2 3
  2. Copy number variations of the ATP-binding cassette transporter ABCC6 gene and its pseudogenes. (PMID: 22873774) Kringen M.K. … Piehler A.P. (BMC Res Notes 2012) 2 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for ABCC6P1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate ABCC6P1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for ABCC6P1
    • Block miRNA regulation of ABCC6P1 using miScript Target Protectors

    Sources for ABCC6P1 Gene

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