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Aliases & Descriptions for ABCC6
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ABC34 2 , 5 ARA 2 , 3 , 5 EST349056 1 , 2 MLP1 1 , 2 , 5 MOAT-E 3 MOATE 2 MRP6 1 , 2 , 3 PXE 2 , 5 PXE1 2
Descriptions ATP-binding cassette sub-family C member 6 3 ATP-binding cassette, sub-family C (CFTR/MRP), member 6 2 ATP-binding cassette, sub-family C, member 6 2 Anthracycline resistance-associated protein 2 , 3 Multi-specific organic anion transporter E 3 pseudoxanthoma elasticum 1
Search outside databases for aliases for ABCC6 genePrevious GC identifers: GC16M016071 GC16M015526 GC16M016210
Summaries for ABCC6 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for ABCC6 : The protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC)transporters. ABC proteins transport various molecules across extra- and intra-cellular membranes.ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20,White). The encoded protein, a member of the MRP subfamily, is involved in multi-drug resistance.Mutations in this gene cause pseudoxanthoma elasticum. Alternatively spliced transcript variantsthat encode different proteins have been described for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: MRP6_HUMAN, O95255 Function : May participate directly in the active transport of drugs into subcellular organelles orinfluence drug distribution indirectly. Transports glutathione conjugates as leukotriene-c4 (LTC4)and N-ethylmaleimide S-glutathione (NEM-GS)
Gene Wiki entry for ABCC6
Genomic Location for ABCC6
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the ABCC6 gene Entrez Gene cytogenetic band: 16p13.1 Ensembl cytogenetic band: 16p13.11 HGNC cytogenetic band: 16p13.1 ABCC6 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 16 GeneLoc Exon Structure
GeneLoc location for GC16M016151:
(about GC identifiers )
Start:
16,150,923 bp from pter
End:
16,224,838 bp from pter
Size:
73,916 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000016.8 NT_010393.15 Proteins for ABCC6
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: MRP6_HUMAN, O95255 (See
protein sequence )Recommended Name: Multidrug resistance-associated protein 6 Size : 1503 amino acids; 164904 Da
Subcellular location : Membrane; Multi-pass membrane protein (By similarity)
Sequence caution : Sequence=AAC15785.1; Type=Erroneous gene model prediction;
Secondary accessions : P78420 Q9UMZ7
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001072996.1 NP_001162.4 ENSEMBL proteins: ENSP00000205558 ENSP00000205557 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for ABCC6: Assays for ABCC6:
Protein
Domains/ Families for ABCC6(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry O95255 ProtoNet protein and cluster: O95255
UniProtKB/Swiss-Prot: MRP6_HUMAN, O95255 Similarity : Belongs to the ABC transporter family. Conjugate transporter (TC 3.A.1.208) subfamilySimilarity : Contains 2 ABC transmembrane type-1 domainsSimilarity : Contains 2 ABC transporter domains
Gene Function for ABCC6
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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Millipore ,
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siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001079528 Applied Biosystems Silencer ® siRNAs for ABCC6 Sigma-Aldrich siRNA and siRNA Panels for ABCC6 Sigma-Aldrich shRNA Panels and shRNA for ABCC6 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001079528                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001079528                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001079528  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001171 UniProtKB/Swiss-Prot: MRP6_HUMAN, O95255 Function : May participate directly in the active transport of drugs into subcellular organelles orinfluence drug distribution indirectly. Transports glutathione conjugates as leukotriene-c4 (LTC4)and N-ethylmaleimide S-glutathione (NEM-GS)
Genatlas biochemistry entry for ABCC6 :ATP binding cassette superfamily,subfamily C (CFTR/MRP),member 6,expressed in normal hematopoieticprecursors
7 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Abcc6) :5 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for ABCC6
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for ABCC6 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for ABCC6 3 Interacting proteins for ABCC6 (ENSP00000205557 3 ) via UniProtKB, MINT, and/or STRING About this table 4 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for ABCC6 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for ABCC6 3 Novoseek chemical compound relationships for ABCC6 gene
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Transcripts for ABCC6(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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siRNAs from Applied Biosystems ,
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shRNA from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001079528 Sigma-Aldrich siRNA and siRNA Panels for ABCC6 Sigma-Aldrich shRNA Panels and shRNA for ABCC6 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001079528 NM_001171
REFSEQ mRNAs for ABCC6 gene (2 alternative transcripts): NM_001079528.3 NM_001171.5
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001079528 NM_001171
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001079528                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001079528                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001079528  
Additional cDNA sequence: AF076622.1 AF168791.1 AK298295.1 AM774324.1 AY078405.1 BC050733.1 BC131732.1 CR609146.1 U66689.1
6 DOTS entries : DT.112058 DT.100748629 DT.100836282 DT.97770455 DT.100889165 DT.453296
14 AceView cDNA sequences :AI830055 AI631807 BX283084 R99091 BI830076 AW235625 BV203038 BC015978 BF334136 R99635 BQ181437 AI935444 BF105026 H94400
highest scoring ESTs for ABCC6 :AF076622 AF168791 AL596779 BC050733 BU187020 H49232 H49806 N95104 R97754 U66689
Unigene Cluster for ABCC6: ATP-binding cassette, sub-family C (CFTR/MRP), member 6 Hs.442182 [show with all ESTs ] Unigene Representative Sequence: NM_001171 GeneLoc Exon Structure 2 Ensembl transcripts including schematic representations : ENST00000205558
ENST00000205557
Expression for ABCC6
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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ABCC6 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for ABCC6 1 / 2 / 3
8 probe-sets matching ABCC6 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TAGACTCTTGSOURCE GeneReport for Unigene cluster: Hs.442182 Expression variation in blood from EXPOLDB for ABCC6
UniProtKB/Swiss-Prot: MRP6_HUMAN, O95255 Tissue specificity : Expressed in kidney and liver. Very low expression in other tissues
Orthologs for ABCC6
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for ABCC6 gene from 5 species
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
dog (Canis familiaris)
ABCC61
--
ATP-binding cassette, sub-family C (CFTR/MRP), member more
83.43(n) 79.57(a)
489993 XM_547113.2 XP_547113.2
rat (Rattus norvegicus)
Abcc61
--
ATP-binding cassette, sub-family C (CFTR/MRP), member more
80.82(n) 79.61(a)
81642 NM_031013.1 NP_112275.1
mouse (Mus musculus)
Abcc61 , 5
7 (24.50 cM) 5
ATP-binding cassette, sub-family C (CFTR/MRP), member more 1, 5
80.95(n) 1 79.62(a) 1
27421 1 NM_018795.1 1 NP_061265.1 1 AB028737 5 BC040400 5 (see all 9 )
chicken (Gallus gallus)
ABCC61
--
ATP-binding cassette, sub-family C (CFTR/MRP), member more
59.94(n) 54.72(a)
416600 XM_001234743.1 XP_001234744.1
worm (Caenorhabditis elegans)
C18C4.23
V(5541395-5548247)
trans-membrane protein
23(a)
--
About this table Species with no ortholog for ABCC6 ENSEMBL Gene Tree for ABCC6 Paralogs for ABCC6 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for ABCC6 gene ABCC3 2 ABCC1 2 ABCC2 2
SNPs/Variants for ABCC6 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for ABCC6 (up to first 250kb)
Disorders & Mutations for ABCC6
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 603234 disorders : 264800 177850 UniProtKB/Swiss-Prot: MRP6_HUMAN, O95255
Defects in ABCC6 are the cause of pseudoxanthoma elasticum (PXE) [MIM:264800]. PXE is adisorder characterized by calcification of elastic fibers in skin, arteries and retina thatresults in dermal lesions with associated laxity and loss of elasticity, arterial insufficiencyand retinal hemorrhages leading to macular degeneration. PXE is caused in the overwhelmingmajority of cases by homozygous or compound heterozygous mutations in the ABCC6 gene (autosomalrecessive PXE). Individuals carrying heterozygous mutations express limited manifestations of thepseudoxanthoma elasticum phenotype (autosomal dominant PXE)
10/14 Novoseek disease relationships for ABCC6 gene (see all 14
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
pseudoxanthoma elasticum
98.70
90
11536079 (2), 15459974 (2), 16604369 (2), 11439001 (2) (see all 63 )
angioid streaks
89.30
5
19284998 (1), 17134037 (1), 12271376 (1), 14694786 (1)
heritable connective tissue disorder
89.12
3
15086542 (1), 16571645 (1), 16374464 (1)
genetic disorder
71.26
7
15459974 (1), 15760889 (1), 12810839 (1), 11702217 (1) (see all 6 )
calcification
66.59
14
18469514 (1), 16763870 (1), 16543900 (1), 16261549 (1) (see all 10 )
connective tissue diseases
48.09
3
14667841 (1), 19341707 (1)
metabolic disorder
44.69
6
18469514 (1), 17134037 (1), 11493310 (1), 15894595 (1) (see all 5 )
choroidal neovascularization
23.88
1
17134037 (1)
coronary artery disease
0.19
4
12176944 (2), 14631379 (1), 16854481 (1)
cancer
0.00
1
9892204 (1)
About this table GeneTests: ABCC6 Pseudoxanthoma Elasticum Human Gene Mutation Database : ABCC6 Genetic Association Database: ABCC6 Human Genome Epidemiology Navigator: ABCC6 (13 documents)
Medical News for ABCC6 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for ABCC6 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/144 PubMed articles for ABCC6 gene (see all 144
): ABCC6 gene polymorphism associated with variation in plasma lipoproteins. (PubMed id 11776382) 1, 3, 4, 6 Wang J.... Hegele R.A. (2001) Loss of ATP-dependent transport activity in pseudoxanthoma elasticum- associated mutants of human ABCC6 (MRP6). (PubMed id 11880368) 1, 3, 4 Ilias A.... Varadi A. (2002) Expression of human MRP6, a homologue of the multidrug resistance protein gene MRP1, in tissues and cancer cells. (PubMed id 9892204) 1, 3, 4 Kool M.... Borst P. (1999) Identification of ABCC6 pseudogenes on human chromosome 16p: implications for mutation detection in pseudoxanthoma elasticum. (PubMed id 11702217) 1, 3, 4 Pulkkinen L.... Uitto J. (2001) ARA, a novel ABC transporter, is located at 16p13.1, is deleted in inv(16) leukemias, and is shown to be expressed in primitive hematopoietic precursors. (PubMed id 9721217) 1, 2, 3 Kuss B.J....Davey R.A. (1998) A spectrum of ABCC6 mutations is responsible for pseudoxanthoma elasticum. (PubMed id 11536079) 1, 3, 4 Le Saux O.... Boyd C.D. (2001) Pseudoxanthoma elasticum: Point mutations in the ABCC6 gene and a large deletion including also ABCC1 and MYH11. (PubMed id 11439001) 1, 2, 3 Meloni I....Renieri A. (2001) Pseudoxanthoma elasticum: mutations in the MRP6 gene encoding a transmembrane ATP-binding cassette (ABC) transporter. (PubMed id 10811882) 1, 3, 4 Ringpfeil F.... Uitto J. (2000) Frequent mutation in the ABCC6 gene (R1141X) is associated with a strong increase in the prevalence of coronary artery disease. (PubMed id 12176944) 1, 3, 6 Trip M.D....Bergen A.A. (2002) Homozygosity for the R1268Q mutation in MRP6, the pseudoxanthoma elasticum gene, is not disease-causing. (PubMed id 10913334) 1, 3, 4 Germain D.P.... Jeunemaitre X. (2000)
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Genome Databases showing ABCC6
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing ABCC6
(According to HUGE )
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Specialized Databases showing ABCC6 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
ATLAS Chromosomes in Cancer entry for ABCC6 Genetics and Cytogenetics in Oncology and Haematology Mutations of the ABCC6 gene http://www.retina-international.com/sci-news/abcc6mut.htm GeneReviews http://www.genetests.org/query?gene=ABCC6
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-- Services for ABCC6 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for ABCC6:
Recombinant Proteins (MRP6 ) Antibodies (MRP6 )
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GeneCards Homepage - Last full update: 1 Jul 2009
Incremental update: 13 Oct 2009