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Aliases for ABCC5-AS1 Gene

Subcategory (RNA class) for ABCC5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ABCC5-AS1 Gene

  • ABCC5 Antisense RNA 1 2 3 5
  • ABCC5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ABCC5-AS1 Gene

Previous GeneCards Identifiers for ABCC5-AS1 Gene

  • GC00U933831
  • GC03P183725

Summaries for ABCC5-AS1 Gene

GeneCards Summary for ABCC5-AS1 Gene

ABCC5-AS1 (ABCC5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ABCC5-AS1 Gene

Genomics for ABCC5-AS1 Gene

Regulatory Elements for ABCC5-AS1 Gene

Enhancers for ABCC5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G184133 1.2 ENCODE 10.5 +128.9 128900 3.1 CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 TBX21 ZNF610 GLIS1 VWA5B2 AP2M1 ABCC5-AS1 ABCC5 HTR3C CAMK2N2 EIF4G1 DVL3 ENSG00000273181 ENSG00000272721
GH03G183966 0.7 ENCODE 11.5 -39.8 -39811 0.2 PKNOX1 SIN3A RAD21 E2F1 CTBP1 ZNF316 GATA3 TCF7L2 EZH2 ZNF687 ABCC5-AS1 HTR3C RPSAP31 PARL HTR3E-AS1 EIF2B5 PSMD2 CAMK2N2 PIR62380
GH03G183967 0.6 ENCODE 11.5 -38.4 -38431 0.2 PKNOX1 RFX1 MNT FOXA1 GATA3 CREB1 FOS FOSL2 ABCC5-AS1 HTR3C PARL RPSAP31 HTR3E-AS1 EIF2B5 PSMD2 CAMK2N2 PIR62380
GH03G184005 1.2 Ensembl ENCODE 0.7 +0.0 49 1.6 PKNOX1 ARNT SIN3A GATA2 FOS DEK PAF1 ZHX2 JUNB ZNF592 ABCC5 EEF1A1P8 HTR3D HTR3C PARL RPSAP31 EIF2B5 CAMK2N2 MAP6D1 ABCC5-AS1
GH03G184002 0.8 Ensembl ENCODE 0.7 -2.4 -2439 2.8 ZNF579 CTCF PAF1 ZBTB33 PRDM1 ABCC5 EEF1A1P8 HTR3D CAMK2N2 MAP6D1 ABCC5-AS1 PIR62380
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ABCC5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ABCC5-AS1 Gene

Chromosome:
3
Start:
184,006,338 bp from pter
End:
184,011,419 bp from pter
Size:
5,082 bases
Orientation:
Plus strand

Genomic View for ABCC5-AS1 Gene

Genes around ABCC5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ABCC5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ABCC5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ABCC5-AS1 Gene

Proteins for ABCC5-AS1 Gene

Post-translational modifications for ABCC5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ABCC5-AS1 Gene

Domains & Families for ABCC5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ABCC5-AS1 Gene

Function for ABCC5-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ABCC5-AS1 Gene

Localization for ABCC5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ABCC5-AS1 Gene

Pathways & Interactions for ABCC5-AS1 Gene

SuperPathways for ABCC5-AS1 Gene

No Data Available

Interacting Proteins for ABCC5-AS1 Gene

Gene Ontology (GO) - Biological Process for ABCC5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ABCC5-AS1 Gene

Drugs & Compounds for ABCC5-AS1 Gene

No Compound Related Data Available

Transcripts for ABCC5-AS1 Gene

mRNA/cDNA for ABCC5-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ABCC5-AS1 Gene

ABCC5 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ABCC5-AS1 Gene

No ASD Table

Relevant External Links for ABCC5-AS1 Gene

GeneLoc Exon Structure for
ABCC5-AS1
ECgene alternative splicing isoforms for
ABCC5-AS1

Expression for ABCC5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ABCC5-AS1 Gene

SOURCE GeneReport for Unigene cluster for ABCC5-AS1 Gene:

Hs.570696
genes like me logo Genes that share expression patterns with ABCC5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ABCC5-AS1 Gene

Orthologs for ABCC5-AS1 Gene

Evolution for ABCC5-AS1 Gene

ENSEMBL:
Gene Tree for ABCC5-AS1 (if available)
TreeFam:
Gene Tree for ABCC5-AS1 (if available)

No data available for Orthologs for ABCC5-AS1 Gene

Paralogs for ABCC5-AS1 Gene

No data available for Paralogs for ABCC5-AS1 Gene

Variants for ABCC5-AS1 Gene

Sequence variations from dbSNP and Humsavar for ABCC5-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000429695 -- 184,005,487(+) TCAGT(A/G)CACCA intron-variant, upstream-variant-2KB
rs1000643465 -- 184,011,017(+) GATTA(C/T)GGGCG intron-variant
rs1001164949 -- 184,007,938(+) GACTA(C/G)GTATC intron-variant
rs1001557317 -- 184,008,028(+) ATGAT(A/G)CCTCC intron-variant
rs1001836079 -- 184,007,191(+) AATTT(G/T)TTGTA intron-variant

Relevant External Links for ABCC5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ABCC5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ABCC5-AS1 Gene

Disorders for ABCC5-AS1 Gene

Relevant External Links for ABCC5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ABCC5-AS1

No disorders were found for ABCC5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ABCC5-AS1 Gene

Publications for ABCC5-AS1 Gene

No publications were found for ABCC5-AS1 Gene.

Products for ABCC5-AS1 Gene

Sources for ABCC5-AS1 Gene

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