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Aliases for ABCC5-AS1 Gene

Subcategory (RNA class) for ABCC5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ABCC5-AS1 Gene

  • ABCC5 Antisense RNA 1 2 3 5
  • ABCC5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ABCC5-AS1 Gene

Previous GeneCards Identifiers for ABCC5-AS1 Gene

  • GC00U933831
  • GC03P183725

Summaries for ABCC5-AS1 Gene

GeneCards Summary for ABCC5-AS1 Gene

ABCC5-AS1 (ABCC5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ABCC5-AS1 Gene

Genomics for ABCC5-AS1 Gene

Regulatory Elements for ABCC5-AS1 Gene

Enhancers for ABCC5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F184133 1.2 ENCODE 10.5 +128.9 128900 3.1 ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 YY1 SLC30A9 ZNF207 ZNF143 PARL VWA5B2 EEF1A1P8 POLR2H MAGEF1 HSP90AA5P AP2M1 ABCC5-AS1 ENSG00000273403 ABCC5
GH03F183966 0.7 ENCODE 11.5 -39.8 -39811 0.2 ZNF687 PKNOX1 MNT DPF2 RAD21 ZNF217 SREBF1 E2F1 ZNF316 GATA3 ABCC5-AS1 HTR3C PARL RPSAP31 HTR3E-AS1 EIF2B5 PSMD2 CAMK2N2 PIR62380
GH03F183967 0.6 ENCODE 11.5 -38.4 -38431 0.2 GATA3 RFX1 PKNOX1 FOS FOSL2 ABCC5-AS1 HTR3C PARL RPSAP31 HTR3E-AS1 EIF2B5 PSMD2 CAMK2N2 PIR62380
GH03F184005 0.9 ENCODE 0.8 0.0 -26 1.5 HDAC1 TBP PKNOX1 SIN3A ZBTB40 RFX5 ZNF366 FOS ZNF362 ZBTB2 ABCC5 EEF1A1P8 HTR3D HTR3C PARL RPSAP31 EIF2B5 CAMK2N2 MAP6D1 ABCC5-AS1
GH03F184015 1.1 ENCODE 0.4 +10.7 10665 3.6 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 ZNF2 YY1 HTR3D ENSG00000271682 ABCC5 LINC02069 HTR3C PARL EIF2B5 AP2M1 ALG3 CAMK2N2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ABCC5-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ABCC5-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001855655 -238 201 TBP PKNOX1 SIN3A ZBTB40 RFX5 ZNF366 FOS ZNF362 ZBTB2 ZHX2

Genomic Location for ABCC5-AS1 Gene

Chromosome:
3
Start:
184,006,338 bp from pter
End:
184,011,419 bp from pter
Size:
5,082 bases
Orientation:
Plus strand

Genomic View for ABCC5-AS1 Gene

Genes around ABCC5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ABCC5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ABCC5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ABCC5-AS1 Gene

Proteins for ABCC5-AS1 Gene

Post-translational modifications for ABCC5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ABCC5-AS1 Gene

Domains & Families for ABCC5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ABCC5-AS1 Gene

Function for ABCC5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ABCC5-AS1 Gene

Localization for ABCC5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ABCC5-AS1 Gene

Pathways & Interactions for ABCC5-AS1 Gene

SuperPathways for ABCC5-AS1 Gene

No Data Available

Interacting Proteins for ABCC5-AS1 Gene

Gene Ontology (GO) - Biological Process for ABCC5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ABCC5-AS1 Gene

Transcripts for ABCC5-AS1 Gene

mRNA/cDNA for ABCC5-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ABCC5-AS1 Gene

ABCC5 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ABCC5-AS1 Gene

No ASD Table

Relevant External Links for ABCC5-AS1 Gene

GeneLoc Exon Structure for
ABCC5-AS1
ECgene alternative splicing isoforms for
ABCC5-AS1

Expression for ABCC5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ABCC5-AS1 Gene

SOURCE GeneReport for Unigene cluster for ABCC5-AS1 Gene:

Hs.570696
genes like me logo Genes that share expression patterns with ABCC5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ABCC5-AS1 Gene

Orthologs for ABCC5-AS1 Gene

Evolution for ABCC5-AS1 Gene

ENSEMBL:
Gene Tree for ABCC5-AS1 (if available)
TreeFam:
Gene Tree for ABCC5-AS1 (if available)

No data available for Orthologs for ABCC5-AS1 Gene

Paralogs for ABCC5-AS1 Gene

No data available for Paralogs for ABCC5-AS1 Gene

Variants for ABCC5-AS1 Gene

Sequence variations from dbSNP and Humsavar for ABCC5-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10541470 -- 184,010,267(+) GTCTC(-/A)AAAAA intron-variant
rs111669562 -- 184,010,798(+) TTCTT(C/T)TTTTT intron-variant
rs111725271 -- 184,010,827(+) GAGTC(C/T)CACTC intron-variant
rs111769307 -- 184,004,594(+) CTTAG(C/T)ACAAG intron-variant, upstream-variant-2KB
rs111851076 -- 184,009,179(+) TTCTC(A/G/T)GTTAA intron-variant

Relevant External Links for ABCC5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ABCC5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ABCC5-AS1 Gene

Disorders for ABCC5-AS1 Gene

Relevant External Links for ABCC5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ABCC5-AS1

No disorders were found for ABCC5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ABCC5-AS1 Gene

Publications for ABCC5-AS1 Gene

No publications were found for ABCC5-AS1 Gene.

Products for ABCC5-AS1 Gene

Sources for ABCC5-AS1 Gene

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