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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ABCC4 Gene

protein-coding   GIFtS: 66
GCID: GC13M095672

ATP-binding cassette, sub-family C (CFTR/MRP), member 4

 Explore 34 diseases affiliated with
ABCC4 via our new
 Human Malady Compendium 
Biological research products
for ABCC4
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
ATP-Binding Cassette, Sub-Family C (CFTR/MRP), Member 41 2     ATP-Binding Cassette Sub-Family C Member 42 3
MRP41 2 3 5     MRP/CMOAT-Related ABC Transporter2 3
MOAT-B1 2 3     BA464I2.1 (ATP-Binding Cassette, Sub-Family C (CFTR/MRP), Member 4)2
MOATB1 2 5     Canalicular Multispecific Organic Anion Transporter (ABC Superfamily)2
EST1702051 2     Multidrug Resistance-Associated Protein 42
Multi-Specific Organic Anion Transporter B2 3     Multispecific Organic Anion Transporter B2

External Ids:    HGNC: 551   Entrez Gene: 102572   Ensembl: ENSG000001252577   OMIM: 6052505   UniProtKB: O154393   

Export aliases for ABCC4 gene to outside databases

Previous GC identifers: GC13M094033 GC13M090059 GC13M094508 GC13M093370 GC13M094470 GC13M076269


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for ABCC4:
The protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC) transporters. ABC
proteins transport various molecules across extra- and intra-cellular membranes. ABC genes are divided into seven
distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, White). This protein is a member of the MRP subfamily
which is involved in multi-drug resistance. The specific function of this protein has not yet been determined;
however, this protein may play a role in cellular detoxification as a pump for its substrate, organic anions.
Alternative splicing results in multiple splice variants encoding different isoforms. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: MRP4_HUMAN, O15439
Function: May be an organic anion pump relevant to cellular detoxification

Gene Wiki entry for ABCC4


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000013.10  NC_018924.1  NT_009952.14  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ABCC4 gene promoter:
         GR   Sp1   ATF-2   GR-beta   CUTL1   E4BP4   C/EBPalpha   c-Ets-1   N-Myc   GR-alpha   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidABCC4 promoter sequence
   Search SABiosciences Chromatin IP Primers for ABCC4

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ABCC4


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 13q32   Ensembl cytogenetic band:  13q32.1   HGNC cytogenetic band: 13q31

ABCC4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ABCC4 gene location

GeneLoc information about chromosome 13         GeneLoc Exon Structure

GeneLoc location for GC13M095672:  view genomic region     (about GC identifiers)

Start:
95,672,083 bp from pter      End:
95,953,687 bp from pter
Size:
281,605 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: MRP4_HUMAN, O15439 (See protein sequence)
Recommended Name: Multidrug resistance-associated protein 4  
Size: 1325 amino acids; 149527 Da
Subcellular location: Membrane; Multi-pass membrane protein
Secondary accessions: A9Z1Z7 Q8IVZ4 Q8IZN6 Q8NEW8 Q9Y6J2
Alternative splicing: 3 isoforms:  O15439-1   O15439-2   O15439-3   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for ABCC4: NX_O15439

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_O15439

  • ABCC4 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (2 alternative transcripts): 
    NP_001098985.1  NP_005836.2  

    ENSEMBL proteins: 
     ENSP00000366084   ENSP00000388657   ENSP00000442024   ENSP00000398562   ENSP00000440160  
    Reactome Protein details: O15439
    Human Recombinant Protein Products: 
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    Uscn Proteins for ABCC4

    Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005886plasma membrane TAS--
    GO:0016020membrane IDA15297306
    GO:0016021integral to membrane IEA--
    GO:0031088platelet dense granule membrane TAS--


    ABCC4 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ABCC4 for domains           About GeneDecksing

    5/6 InterPro domains/families (see all 6):
     IPR003439 ABC_transporter-like
     IPR001140 ABC_transptr_TM_dom
     IPR003593 AAA+_ATPase
     IPR017940 ABC_transporter_type1
     IPR011527 ABC_transptrTM_dom_typ1

    Graphical View of Domain Structure for InterPro Entry O15439

    ProtoNet protein and cluster: O15439

    UniProtKB/Swiss-Prot: MRP4_HUMAN, O15439
    Similarity: Belongs to the ABC transporter superfamily. ABCC family. Conjugate transporter (TC 3.A.1.208) subfamily
    Similarity: Contains 2 ABC transmembrane type-1 domains
    Similarity: Contains 2 ABC transporter domains


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: MRP4_HUMAN, O15439
    Function: May be an organic anion pump relevant to cellular detoxification

         Genatlas biochemistry entry for ABCC4:
    ATP binding cassette superfamily,subfamily C (CFTR/MRP),member 4

    miRNA
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    hsa-mir-125b (MIRT004989)

    OriGene 3'-UTR Clone (see all 2): ABCC4
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    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat ABCC4
    8/29 QIAGEN miScript miRNA Assays for microRNAs that regulate ABCC4 (see all 29):
    hsa-miR-549 hsa-miR-3910 hsa-miR-125a-5p hsa-miR-4251 hsa-miR-539 hsa-miR-218 hsa-miR-3167 hsa-miR-1297
    SwitchGear 3'UTR luciferase reporter plasmidABCC4 3' UTR sequence
    Inhib. RNA
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    Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005524ATP binding IEA--
    GO:001640415-hydroxyprostaglandin dehydrogenase (NAD+) activity NAS7557451
    GO:0042626ATPase activity, coupled to transmembrane movement of substances IEA--


    ABCC4 for ontologies           About GeneDecksing


    1 GenomeRNAi human phenotype for ABCC4:
     Decreased Salmonella enterica  

    Animal Models:
         Mouse knock-outs for ABCC4: Abcc4tm1Kruh Abcc4tm1Jsch
         12 MGI mutant phenotypes (inferred from 4 alleles(MGI details for Abcc4):
     behavior/neurological  cardiovascular system  digestive/alimentary  growth/size  hematopoietic system 
     homeostasis/metabolism  immune system  integument  mortality/aging  nervous system 
     no phenotypic analysis  renal/urinary system 

    ABCC4 for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/14 super-pathways (see all 14About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Platelet activation, signaling and aggregation
    Platelet activation, signaling and aggregation1.00
    Hemostasis0.43
    2Platelet degranulation
    Platelet degranulation 1.00
    Response to elevated platelet cytosolic Ca2+0.94
    3Acetaminophen Pathway, Pharmacokinetics
    Pathway_PA165986194 -need delete1.00
    Acetaminophen Pathway, Pharmacokinetics1.00
    4Fluoropyrimidine Activity
    Fluoropyrimidine Activity1.00
    Fluoropyrimidine Pathway, Pharmacokinetics0.73
    5ABC-family proteins mediated transport
    ABC-family proteins mediated transport1.00
    ABC transporters0.70

    Pathway sources
    See GeneCards unified pathways
    Show all pathways


    1 Cell Signaling Technology (CST) Pathway for ABCC4
        Glucose / Energy Metabolism

    2 BioSystems Pathways for ABCC4 
        Fluoropyrimidine Activity
    Drug Induction of Bile Acid Pathway

    5/6        Reactome Pathways for ABCC4 (see all 6)
        ABC-family proteins mediated transport
    Hemostasis
    Transmembrane transport of small molecules
    Platelet degranulation
    Platelet activation, signaling and aggregation

    5/9 PharmGKB Pathways for ABCC4 (see all 9)
        Acetaminophen Pathway, Pharmacokinetics
    Fluoropyrimidine Pathway, Pharmacokinetics
    Lamivudine Pathway, Pharmacokinetics/Pharmacodynamics
    Methotrexate Pathway (Brain Cell), Pharmacokinetics
    Methotrexate Pathway (Cancer Cell), Pharmacodynamics

    2         Kegg Pathways  (Kegg details for ABCC4):
        ABC transporters
    Bile secretion


    ABCC4 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for ABCC4

    STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

    4 Interacting proteins for ABCC4 (O154393 ENSP000003660844) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    HAX1O001653, ENSP000003290024I2D: score=1 STRING: ENSP00000329002
    STK3Q131883I2D: score=5 
    ERBB2IPQ96RT13I2D: score=1 
    UBCENSP000003448184STRING: ENSP00000344818
    About this table

    Gene Ontology (GO): 5 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0002576platelet degranulation TAS--
    GO:0007596blood coagulation TAS--
    GO:0008150biological_process ND--
    GO:0030168platelet activation TAS--
    GO:0055085transmembrane transport TAS--


    ABCC4 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    ABCC4 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
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    Browse Tocris compounds for ABCC4

    10/34 DrugBank Compounds for ABCC4 (see all 34)    About this table
    CompoundSynonyms CAS #TypeActionsPubMed Ids
    Cyclic Adenosine Monophosphate3'-5'-cyclic adenosine monophosphate (see all 5)60-92-4transportersubstrate inhibitor11856762 12036927 11802779 11447229
    MethotrexateAmethopterin (see all 12)59-05-2transportersubstrate inhibitor11856762 12883481 11447229 14643890
    DipyridamoleDipiridamol (see all 6)58-32-2transporterinhibitor11856762 12695538 12883481
    IndomethacinIMN (see all 9)53-86-1transporterinhibitor12835412 14643890 19029202
    ProbenecidProbenecid Acid (see all 2)57-66-9transporterinhibitor11856762 12036927 12883481
    Cholic Acid-- 81-25-4transporterinhibitor12883481 14643890
    Folic AcidFolate (see all 9)59-30-3transporterinhibitor12036927 12883481
    Sildenafil-- 139755-83-2transporterinhibitor12695538 12036927
    VerapamilVerapamil [Usan:Ban:Inn] (see all 4)52-53-9transporterinhibitor12036927 14643890
    Adefovir DipivoxilAdefovir (see all 7)142340-99-6transportersubstrate10470083

    10/48 Novoseek chemical compound relationships for ABCC4 gene (see all 48)    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    mk 571 85.1 4 16132345 (1), 12695538 (1)
    adefovir 83 47 17110501 (5), 19735648 (3), 10470083 (3), 18364470 (2) (see all 12)
    probenecid 75.9 3 15504935 (2), 18930752 (1)
    sulfinpyrazone 74.3 1 15504935 (1)
    nucleoside monophosphate 69.1 3 15026196 (1), 10470083 (1), 12695538 (1)
    androstane 65.6 2 15004017 (1), 18662272 (1)
    nucleoside 63.1 20 10470083 (2), 12695538 (2), 15827327 (1), 15364914 (1) (see all 11)
    tenofovir 61.7 12 17110501 (4), 17503669 (3), 20149322 (1)
    tenofovir disoproxil fumarate 60 5 17083032 (3), 20149322 (1)
    6 thioguanine 58.7 2 11447229 (1), 12435799 (1)

    4 PharmGKB related drug/compound annotations for ABCC4 gene
    Drug/compound PharmGKB Annotation
    cyclophosphamideCA  
    doxorubicinCA  
    fluorouracilCA  
    tenofovirCA  
    About this table

    Search CenterWatch for drugs/clinical trials and news about ABCC4 / MRP4 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ABCC4 gene (2 alternative transcripts): 
    NM_001105515.1  NM_005845.3  

    Unigene Cluster for ABCC4:

    ATP-binding cassette, sub-family C (CFTR/MRP), member 4
    Hs.508423  [show with all ESTs]
    Unigene Representative Sequence: NM_005845
    9 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000376887(uc001vmd.4) ENST00000484109 ENST00000471041 ENST00000474158
    ENST00000467685 ENST00000412704(uc010afj.3 uc010afk.3) ENST00000536256(uc010tih.1)
    ENST00000431522(uc001vme.2 uc010afl.1 uc010afm.1) ENST00000538287(uc001vmf.2)


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    Additional cDNA sequence: 

    AB208973.1 AF071202.1 AF071203.1 AF339763.1 AF541977.1 AK290317.1 AK296247.1 AK298953.1 
    AK309460.1 AY081219.1 AY133678.1 AY133679.1 AY133680.1 AY207008.1 BC041560.1 BX647118.1 
    U66686.1 U83660.1 

    20 DOTS entries:

    DT.115026  DT.92431917  DT.120783528  DT.99998873  DT.100764438  DT.91729507  DT.100764437  DT.120783477 
    DT.100764439  DT.40310418  DT.100651779  DT.101972277  DT.92431915  DT.97769103  DT.120783530  DT.120783536 
    DT.95374219  DT.100810521  DT.120783466  DT.40241131 

    24/125 AceView cDNA sequences (see all 125):

    AL699662 BX474791 BM556442 BM462073 BP382967 BQ889997 W31962 N79659 
    AA305627 AY207008 BE879353 BE552099 BM553694 AA860581 Z45397 AA216367 
    AA035221 AF339763 N63981 CF597322 AI419629 BM979399 AI470523 AA229426 

    GeneLoc Exon Structure

    5/9 Alternative Splicing Database (ASD) splice patterns (SP) for ABCC4 (see all 9)    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17a · 17b ^ 18 ^ 19 ^ 20 ^ 21 ^ 22 ^ 23 ^ 24 ^ 25a ·
    SP1:        -     -                                                                                                                             -           -   
    SP2:        -     -                                                                                               -                             -           -   
    SP3:        -     -                                                                                                                                             
    SP4:                                                                                                                                                            
    SP5:              -                                                                                                                                             

    ExUns: 25b ^ 26a · 26b ^ 27 ^ 28 ^ 29 ^ 30 ^ 31 ^ 32 ^ 33 ^ 34 ^ 35a · 35b
    SP1:                                      -                                       
    SP2:                                      -                                       
    SP3:                                                                              
    SP4:                                                                              
    SP5:                                                                              


    ECgene alternative splicing isoforms for ABCC4

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ABCC4 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GTTCGTATTT

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    ABCC4 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    Stem Cell Differentiation: 3 LifeMap Cells 
    NameCategory
    PureStem™ progenitor EN27 (Embryonic Progenitor Cell)
    Mature brain microvascular endothelial cells (Derivation of blood-...)
    Definitive endoderm-like cells (A scalable, suspensi...)
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See ABCC4 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ABCC4

    SOURCE GeneReport for Unigene cluster: Hs.508423

    UniProtKB/Swiss-Prot: MRP4_HUMAN, O15439
    Tissue specificity: Widely expressed, with particularly high levels in prostate, but is barely detectable in liver

        SABiosciences Expression via Pathway-Focused PCR Array including ABCC4: 
              Drug Transporters in human mouse rat

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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for ABCC4 gene from 6/22 species (see all 22)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves ABCC41 ATP-binding cassette, sub-family C (CFTR/MRP), member more 74.9(n)
    78.4(a)
      418791  NM_001030819.1  NP_001025990.1 
    lizard
    (Anolis carolinensis)
    Reptilia ABCC46
    --
    72(a)
    1 ↔ 1
    3(85023613-85193849)
    zebrafish
    (Danio rerio)
    Actinopterygii abcc41 ATP-binding cassette, sub-family C (CFTR/MRP), member more 65.83(n)
    70.1(a)
      368620  NM_001007038.1  NP_001007039.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG92703
    CG45621
    ATP-binding cassette (ABC) transporter3
    CG45621
    46(a)
    (best of 10)3
    51.43(n)1
    46.81(a)1
      38F63
    423621  NM_142581.11  NP_650838.11 
    worm
    (Caenorhabditis elegans)
    Secernentea mrp-61 , 3 ABC transporter3
    Protein MRP-61
    35(a)
    (best of 2)3
    48.99(n)1
    39.31(a)1
      X(4213362-4221731)3
    1806911  NM_076309.31  NP_508710.21 
    rice
    (Oryza sativa)
    Liliopsida Os.332122 Oryza sativa (japonica cultivar-group) cDNA cloneJ more 71.59(n)    NM_190319.1 


    ENSEMBL Gene Tree for ABCC4 (if available)
    TreeFam Gene Tree for ABCC4 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ABCC4 gene
    ABCC122  ABCC12  ABCC102  CFTR2  ABCC82  ABCC52  ABCC32  ABCC62  
    ABCC22  ABCC112  ABCC92  
    18/22 SIMAP similar genes for ABCC4 using alignment to 4 protein entries:     MRP4_HUMAN (see all proteins) (see all similar genes):
    MOAT-B    TAP1    ABCB4    CTFR    ABC-transporter    DKFZp434I2115
    DKFZp781G125    NG-TRA    ABCC2    ABCC1    ABCC12    ABCC3
    ABCC11    MRP3    ABCC5    ABCC9    ABCC10    ABCC6

    ABCC4 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/5760 NCBI SNPs in ABCC4 are shown (see all 5760    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 13 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1501282461,2
    C,unknown95849477(+) ATGATA/C/TGGCTT 2 -- int10--------
    rs1507305111,2
    C,other95818586(+) TTTAGA/GAACTC 4 F syn10--------
    rs1399933351,2
    --95671628(+) ATCTGC/TGGTGA 1 -- ds50010--------
    rs1836623721,2
    --95671629(+) TCTGCA/GGTGAG 1 -- ds50010--------
    rs1493131101,2
    --95671674(+) TGATGC/TGGTAT 1 -- ds50010--------
    rs128698631,2
    C,F,--95671701(+) CCACAC/TTTTGA 1 -- ds50017Minor allele frequency- T:0.39NA WA EA 366
    rs1445496061,2
    --95671929(+) CTACCC/TGTTAG 1 -- ds50010--------
    rs1147880851,2
    F,--95671936(+) TTAGAA/GTACTT 1 -- ds50011Minor allele frequency- G:0.02WA 118
    rs1166265931,2
    C,F,--95671967(+) AGAACC/TGGTTG 1 -- ds50011Minor allele frequency- T:0.05WA 118
    rs1879651171,2
    --95671968(+) GAACCA/GGTTGA 1 -- ds50010--------

    HapMap Linkage Disequilibrium report for ABCC4 (95672083 - 95922083 bp, first 250kb of ABCC4)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 4 variations for ABCC4
         1 CNV: 49276
         3 Indels: 101823 45219 41573
    Human Gene Mutation Database (HGMD): ABCC4

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    ABCC4 for disorders           About GeneDecksing

    OMIM gene information: 605250    OMIM disorders: --

    20/34 diseases for ABCC4 (see all 34):    About MalaCards
    dubin-johnson syndrome    primary biliary cirrhosis    lymphoblastic leukemia    acute liver failure
    acute lymphoblastic leukemia    acute myeloid leukemia    cholestasis    myeloid leukemia
    osteomalacia    malignant glioma    kawasaki disease    bipolar disorder
    lung cancer    ovarian carcinoma    leukemia    breast cancer
    pulmonary disease    hepatocellular carcinoma    pancreatitis    pancreatic carcinoma

    2 diseases from the University of Copenhagen DISEASES database for ABCC4:
    Cholestasis     Bilirubin metabolic disorder

    10/11 Novoseek disease relationships for ABCC4 gene (see all 11)    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    cholestasis 64.9 3 17404579 (2), 15004017 (1)
    breast cancer 39.2 15 17682070 (2), 16393888 (1), 16565357 (1), 10739113 (1) (see all 9)
    cancer 26.9 4 9270026 (1), 16454695 (1), 17943230 (1)
    small cell lung cancer 25.1 2 10100721 (1), 12792791 (1)
    ovarian carcinoma 16.5 1 20005867 (1)
    leukemia 16.5 1 19142964 (1)
    lymphoblastic leukemia acute 11.1 1 12816874 (1)
    immunodeficiency 7.07 4 15105153 (1), 17083032 (1), 10944550 (1)
    virus infection 0 1 15105153 (1)
    cancer lung 0 3 11477564 (2)

    Human Genome Epidemiology (HuGE) Navigator: ABCC4 (20 documents)

    Export disorders for ABCC4 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ABCC4 gene, integrated from 9 sources (see all 216):
    (articles sorted by number of sources associating them with ABCC4)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Isolation of MOAT-B, a widely expressed multidrug resistance- associated protein/canalicular multispecific organic anion transporter-related transporter. (PubMed id 9661885)1, 2, 3 Lee K.... Kruh G.D. (1998)
    2. Characterization of the transport of nucleoside analog drugs by the human multidrug resistance proteins MRP4 and MRP5. (PubMed id 12695538)1, 7, 9 Reid G....Borst P. (2003)
    3. Cotransport of reduced glutathione with bile salts by MRP4 (ABCC4) localized to the basolateral hepatocyte membrane. (PubMed id 12883481)1, 7, 9 Rius M....Keppler D. (2003)
    4. Expression of MRP4 confers resistance to ganciclovir and compromises bystander cell killing. (PubMed id 12105214)1, 2, 9 Adachi M.... Schuetz J. (2002)
    5. The human multidrug resistance protein MRP4 functions as a prostaglandin efflux transporter and is inhibited by nonsteroidal antiinflammatory drugs. (PubMed id 12835412)1, 7, 9 Reid G....Borst P. (2003)
    6. MRP4: A previously unidentified factor in resistance to nucleoside-based antiviral drugs. (PubMed id 10470083)1, 7, 9 Schuetz J.D....Fridland A. (1999)
    7. Analysis of expression of cMOAT (MRP2), MRP3, MRP4, and MRP5, homologues of the multidrug resistance-associated protein gene (MRP1), in human cancer cell lines. (PubMed id 9270026)1, 2, 9 Kool M.... Borst P. (1997)
    8. Human skeletal muscle drug transporters determine loc al exposure and toxicity of statins. (PubMed id 19940267)1, 7, 9 Knauer M.J....Tirona R.G. (2010)
    9. Multidrug resistance protein 4 (MRP4/ABCC4) mediates efflux of bimane-glutathione. (PubMed id 14643890)1, 7, 9 Bai J....Tan T.M. (2004)
    10. The MRP4/ABCC4 gene encodes a novel apical organic anion transporter in human kidney proximal tubules: putative efflux pump for urinary cAMP and cGMP. (PubMed id 11856762)1, 7, 9 van Aubel R.A....Russel F.G. (2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 10257 HGNC: 55 AceView: ABCC4 Ensembl:ENSG00000125257 euGenes: HUgn10257
    ECgene: ABCC4 Kegg: 10257 H-InvDB: ABCC4

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ABCC4 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for ABCC4 Genetics and Cytogenetics in Oncology and Haematology
    ABCMdbhttp://abcmutations.hegelab.org/proteinDetails?uniprot_id=O15439

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ABCC4 gene:
    Search GeneIP for patents involving ABCC4

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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