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Aliases & Descriptions for ABCC11
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EWWD 2 , 5 MRP8 1 , 2 , 3 , 5 OTTHUMP00000164191 2 WW 2 , 5
Descriptions ATP-binding cassette protein C11 2 ATP-binding cassette transporter MRP8 2 ATP-binding cassette, sub-family C (CFTR/MRP), member 11 2 ATP-binding cassette, sub-family C, member 11 2 Multidrug resistance-associated protein 8 3 multi-resistance protein 8 2
Search outside databases for aliases for ABCC11 genePrevious GC identifers: GC16M038615 GC16M048249 GC16M047938 GC16M047978
Summaries for ABCC11 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for ABCC11 : The protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC)transporters. ABC proteins transport various molecules across extra- and intra-cellular membranes.ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20,White). This ABC full transporter is a member of the MRP subfamily which is involved in multi-drugresistance. The product of this gene participates in physiological processes involving bile acids,conjugated steroids, and cyclic nucleotides. In addition, a SNP in this gene is responsible fordetermination of human earwax type. This gene and family member ABCC12 are determined to bederived by duplication and are both localized to chromosome 16q12.1. Multiple alternativelyspliced transcript variants have been described for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: ABCCB_HUMAN, Q96J66 Function : Participates in physiological processes involving bile acids, conjugated steroids andcyclic nucleotides. Enhances the cellular extrusion of cAMP and cGMP. Stimulates the ATP-dependentuptake of a range of physiological and synthetic lipophilic anions, including the glutathioneS-conjugates leukotriene C4 and dinitrophenyl S-glutathione, steroid sulfates such asdehydroepiandrosterone 3-sulfate (DHEAS) and estrone 3-sulfate, glucuronides such as estradiol17-beta-D-glucuronide (E(2)17betaG), the monoanionic bile acids glycocholate and taurocholate, andmethotrexate. Probably functions to secrete earwax
Gene Wiki entry for ABCC11
Genomic Location for ABCC11
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the ABCC11 gene Entrez Gene cytogenetic band: 16q12.1 Ensembl cytogenetic band: 16q12.1 HGNC cytogenetic band: 16q12 ABCC11 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 16 GeneLoc Exon Structure
GeneLoc location for GC16M046758:
(about GC identifiers )
Start:
46,758,322 bp from pter
End:
46,838,806 bp from pter
Size:
80,485 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000016.8 NT_010498.15 Proteins for ABCC11
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: ABCCB_HUMAN, Q96J66 (See
protein sequence )Recommended Name: ATP-binding cassette transporter sub-family C member 11 Size : 1382 amino acids; 154301 Da
Subcellular location : Membrane; Multi-pass membrane protein
Secondary accessions : Q8TDJ0 Q96JA6 Q9BX80Alternative splicing : 2 isoforms : Q96J66-1 Q96J66-2
REFSEQ proteins (3 alternative transcripts):
NP_115972.2 NP_149163.2 NP_660187.1 ENSEMBL proteins: ENSP00000311326 ENSP00000378230 ENSP00000349017 ENSP00000378231 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0016020 membrane
IEA -- GO:0016021 integral to membrane
IEA --
About this table Antibodies for ABCC11: Assays for ABCC11:
Protein
Domains/ Families for ABCC11(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q96J66 ProtoNet protein and cluster: Q96J66
UniProtKB/Swiss-Prot: ABCCB_HUMAN, Q96J66 Similarity : Belongs to the ABC transporter family. Conjugate transporter (TC 3.A.1.208) subfamilySimilarity : Contains 2 ABC transmembrane type-1 domainsSimilarity : Contains 2 ABC transporter domains
Gene Function for ABCC11
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_033151 Applied Biosystems Silencer ® siRNAs for ABCC11 Sigma-Aldrich siRNA and siRNA Panels for ABCC11 Sigma-Aldrich shRNA for ABCC11 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_032583                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_032583                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_032583  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_032583 UniProtKB/Swiss-Prot: ABCCB_HUMAN, Q96J66 Function : Participates in physiological processes involving bile acids, conjugated steroids andcyclic nucleotides. Enhances the cellular extrusion of cAMP and cGMP. Stimulates the ATP-dependentuptake of a range of physiological and synthetic lipophilic anions, including the glutathioneS-conjugates leukotriene C4 and dinitrophenyl S-glutathione, steroid sulfates such asdehydroepiandrosterone 3-sulfate (DHEAS) and estrone 3-sulfate, glucuronides such as estradiol17-beta-D-glucuronide (E(2)17betaG), the monoanionic bile acids glycocholate and taurocholate, andmethotrexate. Probably functions to secrete earwax
4 Gene Ontology (GO) molecular function terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0000166 nucleotide binding
IEA -- GO:0005524 ATP binding
IEA -- GO:0016887 ATPase activity
IEA -- GO:0042626 ATPase activity, coupled to transmembrane movement of substances
IEA --
About this table
Pathways & Interactions for ABCC11
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/54 Interacting proteins for ABCC11 (ENSP00000349017 3 ) via UniProtKB, MINT, and/or STRING (see all 54
)About this table 1 Gene Ontology (GO) biological process term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006810 transport
IEA --
About this table
Drugs & Compounds for ABCC11 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for ABCC11 3 Novoseek chemical compound relationships for ABCC11 gene
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Transcripts for ABCC11(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
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OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_033151 Sigma-Aldrich siRNA and siRNA Panels for ABCC11 Sigma-Aldrich shRNA for ABCC11 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_032583 NM_033151 NM_145186
REFSEQ mRNAs for ABCC11 gene (3 alternative transcripts): NM_032583.3 NM_033151.3 NM_145186.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_032583 NM_033151 NM_145186
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_032583                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_032583                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_032583  
Additional cDNA sequence: AF352582.1 AF367202.1 AF411579.1 AK301547.1 AL117406.1 AY040219.1
10 DOTS entries : DT.86846741 DT.97824116 DT.95249093 DT.97771477 DT.120721587 DT.97824115 DT.120721493 DT.120721449 DT.207099 DT.442910
24/26 AceView cDNA sequences (see all 26
):NM_145186 AY040219 NM_032583 AL117406 BF924908 NM_033151 BF447217 BC039085 AF367202 AF352582 AA412392 AF411579 BE089591 BI462847 T81803 W94983 BE869517 AI401832 AI676121 BF760362 AW372856 AW372855 T82135 CD634784
highest scoring ESTs for ABCC11 :AF352582 AF367202 AF411579 BE089591 CD634784 CD634785 NM_032583 NM_033151 NM_145186 AI401832
Unigene Cluster for ABCC11: ATP-binding cassette, sub-family C (CFTR/MRP), member 11 Hs.652267 [show with all ESTs ] Unigene Representative Sequence: AY040219 GeneLoc Exon Structure 5 Alternative Splicing Database (ASD) splice patterns (SP) for ABCC11 ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 ^ 22a · 22b ^ 23 ^ SP1 :   -           -                                         SP2 :   -           -                                         SP3 :             -                                         SP4 :                                                     SP5 :                                                    
ExUns: 24 ^ 25 ^ 26 ^ 27 ^ 28 ^ 29 ^ 30 ^ 31 ^ 32 SP1 :       -             SP2 :       -       -       SP3 :       -             SP4 :                   SP5 :                  
About this scheme ECgene alternative splicing isoforms for ABCC11 4 Ensembl transcripts including schematic representations : ENST00000353782
ENST00000394747
ENST00000356608
ENST00000394748
Expression for ABCC11
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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ABCC11 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for ABCC11 1 / 2 / 3
4 probe-sets matching ABCC11 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CTGAATAATTSOURCE GeneReport for Unigene cluster: Hs.652267 UniProtKB/Swiss-Prot: ABCCB_HUMAN, Q96J66 Tissue specificity : Expressed in many tissues. Not expressed in kidney, spleen and colon. Highlyexpressed in breast cancer. Expressed at moderate levels in normal breast and testis and at verylow levels in liver, brain and placenta
Orthologs for ABCC11
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for ABCC11 gene from 5/6 species (see all 6
)
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
dog (Canis familiaris)
ABCC111
--
ATP-binding cassette, sub-family C (CFTR/MRP), member more
81.44(n) 75.49(a)
478138 XM_535314.2 XP_535314.2
chimpanzee (Pan troglodytes)
ABCC111
--
ATP-binding cassette, sub-family C (CFTR/MRP), member more
99.06(n) 98.77(a)
473275 XM_001163586.1 XP_001163586.1
cow (Bos taurus)
ABCC111
--
ATP-binding cassette, sub-family C (CFTR/MRP), member more
79.95(n) 74.08(a)
522437 XM_600718.3 XP_600718.3
fruit fly (Drosophila melanogaster)
Sur3
31B1
heart development sulfonylurea receptor
41(a)
--
barley (Hordeum vulgare)
Hv.102352
--
Transcribed sequence with moderate similarity to protein more
67.69(n)
BQ469119.1
About this table Species with no ortholog for ABCC11 ENSEMBL Gene Tree for ABCC11 Paralogs for ABCC11 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for ABCC11 gene ABCC12 2
SNPs/Variants for ABCC11 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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UniProtKB/Swiss-Prot: ABCCB_HUMAN, Q96J66 Polymorphism : The allele with Arg-184 is responsible for the dry earwax phenotype [MIM:117800].Human earwax is a mendelian trait consisting of wet and dry types. The wet earwax is brownish andsticky, whereas the dry type lacks cerumen. The wet cerumen phenotype is completely dominant. Thedry type is seen frequently (80-95%) among East Asians, but uncommon (0-3%) in populations ofEuropean and African origins. Intermediate frequencies (30-50%) of the dry type are seen inpopulations of Southern Asia, the Pacific Islands, Central Asia and Asia Minor, as well as amongthe Native North American and Inuit of Asian ancestry
HapMap Linkage Disequilibrium images for ABCC11 (up to first 250kb)
Disorders & Mutations for ABCC11
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 607040 disorders : 117800
1 Novoseek disease relationship for ABCC11 gene
About this table Human Gene Mutation Database : ABCC11 Human Genome Epidemiology Navigator: ABCC11 (1 document)
Medical News for ABCC11 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for ABCC11 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/38 PubMed articles for ABCC11 gene (see all 38
): Two new genes from the human ATP-binding cassette transporter superfamily, ABCC11 and ABCC12, tandemly duplicated on chromosome 16q12. (PubMed id 11483364) 1, 2, 3, 4 Tammur J....Allikmets R. (2001) MRP8, ATP-binding cassette C11 (ABCC11), is a cyclic nucleotide efflux pump and a resistance factor for fluoropyrimidines 2',3'- dideoxycytidine and 9'-(2'-phosphonylmethoxyethyl)adenine. (PubMed id 12764137) 1, 3, 4 Guo Y....Kruh G.D. (2003) Multiple splicing variants of two new human ATP-binding cassette transporters, ABCC11 and ABCC12. (PubMed id 11688999) 1, 3, 4 Yabuuchi H.... Ishikawa T. (2001) MRP8, a new member of ABC transporter superfamily, identified by EST database mining and gene prediction program, is highly expressed in breast cancer. (PubMed id 11591886) 1, 3, 4 Bera T.K.... Pastan I.H. (2001) Transport of bile acids, sulfated steroids, estradiol 17-beta-D- glucuronide, and leukotriene C4 by human multidrug resistance protein 8 (ABCC11). (PubMed id 15537867) 1, 3, 4 Chen Z.S.... Kruh G.D. (2005) A SNP in the ABCC11 gene is the determinant of human earwax type. (PubMed id 16444273) 1, 3, 4 Yoshiura K.... Niikawa N. (2006) The human ATP-binding cassette (ABC) transporter superfamily. (PubMed id 11435397) 2, 3 Dean M....Allikmets R. (2001) Human multidrug resistance protein 8 (MRP8/ABCC11), an apical efflux pump for steroid sulfates, is an axonal protein of the CNS and peripheral nervous system. (PubMed id 16359813) 1, 3 Bortfeld M....Keppler D. (2006) Expression of ABCC-type nucleotide exporters in blasts of adult acute myeloid leukemia: relation to long-term survival. (PubMed id 19240178) 1, 3 Guo Y....Schaich M. (2009) Determination of genetic predisposition to patent ductus arteriosus in preterm infants. (PubMed id 19336370) 3 Dagle J.M....Murray J.C. (2009)
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Genome Databases showing ABCC11
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing ABCC11
(According to HUGE )
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--
Specialized Databases showing ABCC11 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for ABCC11 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for ABCC11:
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Aliases for ABCC11
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GeneCards Homepage - Last full update: 1 Jul 2009
Incremental update: 13 Oct 2009