Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ABCC11 Gene

protein-coding   GIFtS: 56
GCID: GC16M048249

ATP-binding cassette, sub-family C (CFTR/MRP), member 11

 Explore 17 diseases affiliated with
ABCC11 via our new
 Human Malady Compendium 
Biological research products
for ABCC11
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
ATP-Binding Cassette, Sub-Family C (CFTR/MRP), Member 111 2     ATP-Binding Cassette Protein C112
MRP81 2 3 5     ATP-Binding Cassette Sub-Family C Member 112
Multidrug Resistance-Associated Protein 82 3     ATP-Binding Cassette Transporter MRP82
EWWD2 5     ATP-Binding Cassette Transporter Sub-Family C Member 112
WW2 5     Multi-Resistance Protein 82

External Ids:    HGNC: 146391   Entrez Gene: 853202   Ensembl: ENSG000001212707   OMIM: 6070405   UniProtKB: Q96J663   

Export aliases for ABCC11 gene to outside databases

Previous GC identifers: GC16M038615 GC16M047938 GC16M047978 GC16M046758 GC16M034090


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for ABCC11:
The protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC) transporters. ABC
proteins transport various molecules across extra- and intra-cellular membranes. ABC genes are divided into seven
distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, White). This ABC full transporter is a member of the MRP
subfamily which is involved in multi-drug resistance. The product of this gene participates in physiological processes
involving bile acids, conjugated steroids, and cyclic nucleotides. In addition, a SNP in this gene is responsible for
determination of human earwax type. This gene and family member ABCC12 are determined to be derived by duplication and
are both localized to chromosome 16q12.1. Multiple alternatively spliced transcript variants have been described for
this gene. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: ABCCB_HUMAN, Q96J66
Function: Participates in physiological processes involving bile acids, conjugated steroids and cyclic nucleotides.
Enhances the cellular extrusion of cAMP and cGMP. Stimulates the ATP-dependent uptake of a range of physiological and
synthetic lipophilic anions, including the glutathione S-conjugates leukotriene C4 and dinitrophenyl S-glutathione,
steroid sulfates such as dehydroepiandrosterone 3-sulfate (DHEAS) and estrone 3-sulfate, glucuronides such as
estradiol 17-beta-D-glucuronide (E(2)17betaG), the monoanionic bile acids glycocholate and taurocholate, and
methotrexate. Probably functions to secrete earwax

Gene Wiki entry for ABCC11


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000016.9  NC_018927.1  NT_010498.15  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ABCC11 gene promoter:
         ATF-2   c-Jun   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): ABCC11 promoter sequence
   Search SABiosciences Chromatin IP Primers for ABCC11

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ABCC11


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 16q12.1   Ensembl cytogenetic band:  16q12.1   HGNC cytogenetic band: 16q12

ABCC11 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ABCC11 gene location

GeneLoc information about chromosome 16         GeneLoc Exon Structure

GeneLoc location for GC16M048249:  view genomic region     (about GC identifiers)

Start:
48,200,821 bp from pter      End:
48,281,479 bp from pter
Size:
80,659 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: ABCCB_HUMAN, Q96J66 (See protein sequence)
Recommended Name: ATP-binding cassette sub-family C member 11  
Size: 1382 amino acids; 154301 Da
Subcellular location: Membrane; Multi-pass membrane protein
Secondary accessions: Q8TDJ0 Q96JA6 Q9BX80
Alternative splicing: 2 isoforms:  Q96J66-1   Q96J66-2   

Explore the universe of human proteins at neXtProt for ABCC11: NX_Q96J66

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q96J66

  • ABCC11 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (3 alternative transcripts): 
    NP_115972.2  NP_149163.2  NP_660187.1  

    ENSEMBL proteins: 
     ENSP00000311326   ENSP00000349017   ENSP00000378230   ENSP00000456268   ENSP00000378231  
     ENSP00000438530  
    Reactome Protein details: Q96J66
    Human Recombinant Protein Products: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
    Browse OriGene Protein Over-expression Lysates
    OriGene Custom Protein Services for ABCC11 
    GenScript Custom Purified and Recombinant Proteins Services for ABCC11
    Novus Biologicals ABCC11 Proteins
    Novus Biologicals ABCC11 Lysates
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for ABCC11

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005886plasma membrane TAS--
    GO:0016021integral to membrane IEA--


    ABCC11 for ontologies           About GeneDecksing



    ABCC11 Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse R&D Systems for Antibodies
    OriGene Antibodies: ABCC11
    OriGene Custom Antibody Services for ABCC11 
    GenScript Custom Superior Antibodies Services for ABCC11
    Novus Biologicals ABCC11 Antibodies
    Search for Antibodies for ABCC11 at Abcam  
    Uscn Antibodies for ABCC11
    ThermoFisher Antibodies for ABCC11

    Assay Products for ABCC11: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for ABCC11
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for ABCC11


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ABCC11 for domains           About GeneDecksing

    5/6 InterPro domains/families (see all 6):
     IPR003439 ABC_transporter-like
     IPR001140 ABC_transptr_TM_dom
     IPR003593 AAA+_ATPase
     IPR017940 ABC_transporter_type1
     IPR011527 ABC_transptrTM_dom_typ1

    Graphical View of Domain Structure for InterPro Entry Q96J66

    ProtoNet protein and cluster: Q96J66

    UniProtKB/Swiss-Prot: ABCCB_HUMAN, Q96J66
    Similarity: Belongs to the ABC transporter superfamily. ABCC family. Conjugate transporter (TC 3.A.1.208) subfamily
    Similarity: Contains 2 ABC transmembrane type-1 domains
    Similarity: Contains 2 ABC transporter domains


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: ABCCB_HUMAN, Q96J66
    Function: Participates in physiological processes involving bile acids, conjugated steroids and cyclic nucleotides.
    Enhances the cellular extrusion of cAMP and cGMP. Stimulates the ATP-dependent uptake of a range of physiological and
    synthetic lipophilic anions, including the glutathione S-conjugates leukotriene C4 and dinitrophenyl S-glutathione,
    steroid sulfates such as dehydroepiandrosterone 3-sulfate (DHEAS) and estrone 3-sulfate, glucuronides such as
    estradiol 17-beta-D-glucuronide (E(2)17betaG), the monoanionic bile acids glycocholate and taurocholate, and
    methotrexate. Probably functions to secrete earwax

    miRNA
    Products:
        
    OriGene 3'-UTR Clone (see all 3): ABCC11
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat ABCC11
    Search QIAGEN for miScript miRNA Assays for microRNAs that regulate ABCC11
    SwitchGear 3'UTR luciferase reporter plasmidABCC11 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ABCC11
    OriGene shRNA RFP: ABCC11
    OriGene siRNA: ABCC11
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ABCC11

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for ABCC11

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ABCC11 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ABCC11 (see all 3)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 3): ABCC11 (NM_033151)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for ABCC11
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ABCC11 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for ABCC11
    Search LifeMap BioReagents cell lines for ABCC11

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ABCC11

    Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005524ATP binding IEA--
    GO:0042626ATPase activity, coupled to transmembrane movement of substances IEA--


    ABCC11 for ontologies           About GeneDecksing



    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1ABC-family proteins mediated transport
    ABC-family proteins mediated transport1.00
    ABC transporters0.70
    2SLC-mediated transmembrane transport
    Transmembrane transport of small molecules0.50

    Pathway sources
    See GeneCards unified pathways
    Show all pathways


    2        Reactome Pathways for ABCC11
        ABC-family proteins mediated transport
    Transmembrane transport of small molecules


    1         Kegg Pathway  (Kegg details for ABCC11):
        ABC transporters


    ABCC11 for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ABCC11

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0055085transmembrane transport TAS--


    ABCC11 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    ABCC11 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ABCC11

    1 HMDB Compound for ABCC11    About this table
    CompoundSynonyms CAS #PubMed Ids
    Cyclic AMPCyclic AMP (see all 19)60-92-4--

    7 DrugBank Compounds for ABCC11    About this table
    CompoundSynonyms CAS #TypeActionsPubMed Ids
    Cyclic Adenosine Monophosphate3'-5'-cyclic adenosine monophosphate (see all 5)60-92-4transportersubstrate inhibitor15537867 12764137
    Conjugated EstrogensEstrogens (see all 10)438-67-5transportersubstrate15537867
    Folic AcidFolate (see all 9)59-30-3transportersubstrate15537867
    IndomethacinIMN (see all 9)53-86-1transporterinhibitor15537867
    MethotrexateAmethopterin (see all 12)59-05-2transportersubstrate15537867
    ProbenecidProbenecid Acid (see all 2)57-66-9transporterinhibitor15537867
    Taurocholic Acid-- 81-24-3transporterinhibitor15537867

    6 Novoseek chemical compound relationships for ABCC11 gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    adefovir 51 4 12764137 (2), 16868766 (1)
    5fluorouracil 49.9 16 17237272 (4), 18310281 (2), 12764137 (1), 17216005 (1)
    methotrexate 46.1 12 17237272 (2), 19248091 (1), 18310281 (1), 15537867 (1) (see all 5)
    dehydroepiandrosterone sulfate 40 5 16359813 (2), 15537867 (1)
    dhea 34.8 5 16868766 (2), 16359813 (1)
    iron 0 2 16410366 (1), 8336670 (1)

    Search CenterWatch for drugs/clinical trials and news about ABCC11 / ABCCB 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ABCC11 gene (3 alternative transcripts): 
    NM_032583.3  NM_033151.3  NM_145186.2  

    Unigene Cluster for ABCC11:

    ATP-binding cassette, sub-family C (CFTR/MRP), member 11
    Hs.652267  [show with all ESTs]
    Unigene Representative Sequence: AY040219
    10 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000565329(uc010cbg.1) ENST00000353782(uc010vgk.1 uc002efh.1)
    ENST00000356608 ENST00000394747(uc002eff.1) ENST00000569172 ENST00000567385
    ENST00000565487 ENST00000569991 ENST00000394748(uc002efg.1) ENST00000537808(uc010vgl.1)


    miRNA
    Products:
         
    OriGene 3'-UTR Clone (see all 3): ABCC11
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat ABCC11
    Search QIAGEN for miScript miRNA Assays for microRNAs that regulate ABCC11
    SwitchGear 3'UTR luciferase reporter plasmidABCC11 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ABCC11
    OriGene shRNA RFP: ABCC11
    OriGene siRNA: ABCC11
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ABCC11
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ABCC11 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ABCC11 (see all 3)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 3): ABCC11 (NM_033151)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for ABCC11
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ABCC11 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ABCC11
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse / rat ABCC11
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ABCC11
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ABCC11

    Additional cDNA sequence: 

    AF352582.1 AF367202.1 AF411579.1 AK301547.1 AL117406.1 AY040219.1 

    9 DOTS entries:

    DT.86846741  DT.97824116  DT.95249093  DT.97771477  DT.120721587  DT.97824115  DT.120721493  DT.442910 
    DT.120721449 

    24/26 AceView cDNA sequences (see all 26):

    NM_033151 NM_032583 BF447217 BF924908 AY040219 NM_145186 AL117406 BC039085 
    AF411579 AF352582 AA412392 AF367202 BI462847 W94983 BE089591 BE869517 
    T81803 AI676121 AI401832 BF760362 AW372855 AW372856 T82135 CD634784 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for ABCC11    About this scheme

    ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 ^ 22a · 22b ^ 23 ^
    SP1:        -                             -                                                                                                                     
    SP2:        -                             -                                                                                                                     
    SP3:                                      -                                                                                                                     
    SP4:                                                                                                                                                            
    SP5:                                                                                                                                                            

    ExUns: 24 ^ 25 ^ 26 ^ 27 ^ 28 ^ 29 ^ 30 ^ 31 ^ 32
    SP1:                    -                                 
    SP2:                    -                 -               
    SP3:                    -                                 
    SP4:                                                      
    SP5:                                                      


    ECgene alternative splicing isoforms for ABCC11

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ABCC11 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: CTGAATAATT

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See ABCC11 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ABCC11

    SOURCE GeneReport for Unigene cluster: Hs.652267

    UniProtKB/Swiss-Prot: ABCCB_HUMAN, Q96J66
    Tissue specificity: Expressed in many tissues. Not expressed in kidney, spleen and colon. Highly expressed in breast
    cancer. Expressed at moderate levels in normal breast and testis and at very low levels in liver, brain and placenta

        SABiosciences Expression via Pathway-Focused PCR Array including ABCC11: 
              Drug Transporters in human mouse rat

    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ABCC11
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse / rat ABCC11
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ABCC11
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ABCC11
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ABCC11

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for ABCC11 gene from 4/14 species (see all 14)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    lizard
    (Anolis carolinensis)
    Reptilia ABCC126
    --
    47(a)
    1 → many
    LGc(2649195-2725866)
    zebrafish
    (Danio rerio)
    Actinopterygii abcc126
    ATP-binding cassette, sub-family C (CFTR/MRP), mem...
    47(a)
    1 → many
    7(39550710-39575433)
    worm
    (Caenorhabditis elegans)
    Secernentea mrp-56
    Multidrug Resistance Protein family member (mrp-5)...
    28(a)
    1 → many
    X(14938182-14946249)
    barley
    (Hordeum vulgare)
    Liliopsida Hv.102352 Transcribed sequence with moderate similarity to protein more 67.69(n)    BQ469119.1 


    ENSEMBL Gene Tree for ABCC11 (if available)
    TreeFam Gene Tree for ABCC11 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ABCC11 gene
    ABCC42  ABCC122  ABCC12  ABCC102  CFTR2  ABCC82  ABCC52  ABCC62  
    ABCC32  ABCC22  ABCC92  
    18/20 SIMAP similar genes for ABCC11 using alignment to 3 protein entries:     ABCCB_HUMAN (see all proteins) (see all similar genes):
    ABCC12    ABCB4    CFTR    TAP1    MOAT-B    DKFZp434I2115
    ABCC5    NG-TRA    ABC-transporter    ABCC2    ABCC4    ABCG2
    DKFZp781G125    ABCC9    ABCC1    ABCC3    ABCC8    MRP3

    ABCC11 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    UniProtKB/Swiss-Prot: ABCCB_HUMAN, Q96J66
    Polymorphism: The allele with Arg-184 is responsible for the dry earwax phenotype [MIM:117800]. Human earwax is a
    Mendelian trait consisting of wet and dry types. The wet earwax is brownish and sticky, whereas the dry type lacks
    cerumen. The wet cerumen phenotype is completely dominant. The dry type is seen frequently (80-95%) among East Asians,
    but uncommon (0-3%) in populations of European and African origins. Intermediate frequencies (30-50%) of the dry type
    are seen in populations of Southern Asia, the Pacific Islands, Central Asia and Asia Minor, as well as among the
    Native North American and Inuit of Asian ancestry


    10/1264 NCBI SNPs in ABCC11 are shown (see all 1264    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 16 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs178229311,2
    C,F,H,other34148352(+) TGGCCC/TGAGTA 6 R G mis1 ese337Minor allele frequency- T:0.20NA NS MN EA WA EU 10919
    rs116397531,2
    H--34090756(+) catggG/Tgaaac 3 -- ds50010--------
    rs1426196031,2
    C,F,--34090892(+) GATTGC/AGCCAC 3 -- ds50011Minor allele frequency- A:0.06--542
    rs559788761,2
    C,F,--34091001(+) TTTATA/GTTTTA 3 -- ut316Minor allele frequency- G:0.06NA WA 786
    rs1478088661,2
    F--34091104(+) AAGGAG/AAACCA 3 -- ut311Minor allele frequency- A:0.01--542
    rs770576311,2
    C,F,--34091157(+) AAGGTC/TTTGAG 3 -- ut312Minor allele frequency- T:0.01WA 660
    rs412809391,2
    --34091291(+) CTGCAC/GCTGTG 3 -- ut314Minor allele frequency- G:0.10CSA WA NA 242
    rs412809411,2
    C,F,--34091838(+) GTCTCC/AATTTC 3 -- int18Minor allele frequency- A:0.18NA WA 250
    rs169459171,2
    C,F,H,--34091867(+) GAATTA/GTGCCG 3 -- int114Minor allele frequency- G:0.16NA EA NS WA CSA 562
    rs1118189001,2
    --34091924(+) AGAACG/ATTAGG 3 -- int13Minor allele frequency- A:0.06CSA WA 123

    HapMap Linkage Disequilibrium report for ABCC11 (48200821 - 48281479 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for ABCC11: --
    Human Gene Mutation Database (HGMD): ABCC11

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ABCC11
    DNA2.0 Custom Variant and Variant Library Synthesis for ABCC11

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    ABCC11 for disorders           About GeneDecksing

    OMIM gene information: 607040   
    OMIM disorders: 117800  
    17 diseases for ABCC11:    About MalaCards
    earwax, wet/dry    axillary odor, variation in    colostrum secretion, variation in    dubin-johnson syndrome
    patent ductus arteriosus    dengue hemorrhagic fever    hemorrhagic fever    iron overload
    acute myeloid leukemia    myeloid leukemia    rheumatoid arthritis    breast cancer
    pancreatic carcinoma    arthritis    leukemia    pancreatitis
    carcinoma

    1 disease from the University of Copenhagen DISEASES database for ABCC11:
    Dubin-Johnson syndrome

    1 Novoseek disease relationship for ABCC11 gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    breast cancer 19.2 2 18310281 (5), 11591886 (2), 19383836 (1), 19248091 (1)

    Human Genome Epidemiology (HuGE) Navigator: ABCC11 (6 documents)

    Export disorders for ABCC11 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ABCC11 gene, integrated from 9 sources (see all 57):
    (articles sorted by number of sources associating them with ABCC11)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. MRP8, ATP-binding cassette C11 (ABCC11), is a cyclic nucleotide efflux pump and a resistance factor for fluoropyrimidines 2',3'- dideoxycytidine and 9'-(2'-phosphonylmethoxyethyl)adenine. (PubMed id 12764137)1, 2, 7, 9 Guo Y....Kruh G.D. (2003)
    2. Transport of bile acids, sulfated steroids, estradiol 17-beta-D- glucuronide, and leukotriene C4 by human multidrug resistance protein 8 (ABCC11). (PubMed id 15537867)1, 2, 7, 9 Chen Z.S.... Kruh G.D. (2005)
    3. Two new genes from the human ATP-binding cassette transporter superfamily, ABCC11 and ABCC12, tandemly duplicated on chromosome 16q12. (PubMed id 11483364)1, 2, 3, 9 Tammur J....Allikmets R. (2001)
    4. Multiple splicing variants of two new human ATP-binding cassette transporters, ABCC11 and ABCC12. (PubMed id 11688999)1, 2, 9 Yabuuchi H.... Ishikawa T. (2001)
    5. MRP8, a new member of ABC transporter superfamily, identified by EST database mining and gene prediction program, is highly expressed in breast cancer. (PubMed id 11591886)1, 2, 9 Bera T.K.... Pastan I.H. (2001)
    6. A SNP in the ABCC11 gene is the determinant of human earwax type. (PubMed id 16444273)1, 2, 9 Yoshiura K.... Niikawa N. (2006)
    7. The human ATP-binding cassette (ABC) transporter supe rfamily. (PubMed id 11435397)1, 3 Dean M....Allikmets R. (2001)
    8. Human multidrug resistance protein 8 (MRP8/ABCC11), an apical efflux pump for steroid sulfates, is an axonal protein of the CNS and peripheral nervous system. (PubMed id 16359813)1, 9 Bortfeld M....Keppler D. (2006)
    9. A functional ABCC11 allele is essential in the bioche mical formation of human axillary odor. (PubMed id 19710689)1, 9 Martin A....Natsch A. (2010)
    10. Expression of ABCC-type nucleotide exporters in blasts of adult acute myeloid leukemia: relation to long-term survival. (PubMed id 19240178)1, 9 Guo Y....Schaich M. (2009)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 85320 HGNC: 14639 AceView: ABCC11 Ensembl:ENSG00000121270 euGenes: HUgn85320
    ECgene: ABCC11 Kegg: 85320 H-InvDB: ABCC11

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ABCC11 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for ABCC11 Genetics and Cytogenetics in Oncology and Haematology
    Protein Spotlighthttp://web.expasy.org/spotlight/back_issues/sptlt067.shtml
    ABCMdbhttp://abcmutations.hegelab.org/proteinDetails?uniprot_id=Q96J66

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ABCC11 gene:
    Search GeneIP for patents involving ABCC11

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Browse Antibodies   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     OriGene Antibodies for ABCC11   OriGene shRNA RFP for ABCC11  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ABCC11   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ABCC11  
     Browse OriGene Protein Over-expression Lysates   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for ABCC11   OriGene 3'-UTR Clone for ABCC11  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ABCC11   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ABCC11  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     Browse OriGene full length recombinant human proteins expressed in human HEK293 cells   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for ABCC11   OriGene Custom Protein Services for ABCC11  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat ABCC11
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ABCC11
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ABCC11
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ABCC11
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ABCC11
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ABCC11
     GenScript Custom Purified and Recombinant Proteins Services for ABCC11 GenScript cDNA clones with any tag delivered in your preferred vector for ABCC11
     GenScript Custom Assay Services for ABCC11 GenScript Custom Superior Antibodies Services for ABCC11
     GenScript Custom overexpressing Cell Line Services for ABCC11 CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in ABCC11 promoter
     Search Chromatin IP Primers for ABCC11
     RT2 qPCR Primer Assay in human, mouse / rat ABCC11
     Search GNC Networks for ABCC11
     SABiosciences PCR Arrays including human, mouse, rat ABCC11
     Search Tocris compounds for ABCC11
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     ABCC11 antibodies
     ABCC11 proteins
     ABCC11 lysates
     Search for Antibodies for ABCC11 at Abcam
     See all of Abcam's Antibodies, Kits and Proteins for ABCC11
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     ABCC11 Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for ABCC11
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ABCC11
     SwitchGear 3'UTR luciferase reporter plasmids for ABCC11
     SwitchGear Promoter luciferase reporter plasmids for ABCC11
     ThermoFisher Antibodies for ABCC11
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ABCC11
           
    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      ABCC11 gene at Home site.
    hostname: 356977-web1.xennexinc.com index build: 100 solr: 1.4