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Aliases for ABCB9 Gene

Aliases for ABCB9 Gene

  • ATP-Binding Cassette, Sub-Family B (MDR/TAP), Member 9 2 3
  • ABC Transporter 9 Protein 3 4
  • TAP-Like Protein 3 4
  • TAPL 3 4
  • ATP-Binding Cassette Sub-Family B Member 9 3
  • ATP-Binding Cassette Transporter 9 4
  • EC 3.6.3.44 63
  • EST122234 3
  • KIAA1520 4
  • EC 3.6.3 63
  • HABCB9 4

External Ids for ABCB9 Gene

Previous GeneCards Identifiers for ABCB9 Gene

  • GC12M122118
  • GC12M123114
  • GC12M123221
  • GC12M121851
  • GC12M121938
  • GC12M123413
  • GC12M120375

Summaries for ABCB9 Gene

Entrez Gene Summary for ABCB9 Gene

  • The membrane-associated protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC) transporters. ABC proteins transport various molecules across extra- and intra-cellular membranes. ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, White). This protein is a member of the MDR/TAP subfamily. Members of the MDR/TAP subfamily are involved in multidrug resistance as well as antigen presentation. This family member functions in the translocation of peptides from the cytosol into the lysosomal lumen. Alternative splicing of this gene results in distinct isoforms which are likely to have different substrate specificities. [provided by RefSeq, Jul 2011]

GeneCards Summary for ABCB9 Gene

ABCB9 (ATP-Binding Cassette, Sub-Family B (MDR/TAP), Member 9) is a Protein Coding gene. Among its related pathways are Lysosome and ABC-family proteins mediated transport. GO annotations related to this gene include protein homodimerization activity and MHC class I protein binding. An important paralog of this gene is TAP1.

UniProtKB/Swiss-Prot for ABCB9 Gene

  • ATP-dependent low-affinity peptide transporter which translocates a broad spectrum of peptides from the cytosol to the lysosomal lumen. Displays a broad peptide length specificity from 6-mer up to at least 59-mer peptides with an optimum of 23-mers. Favors positively charged, aromatic or hydrophobic residues in the N- and C-terminal positions whereas negatively charged residues as well as asparagine and methionine are not favored.

Gene Wiki entry for ABCB9 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ABCB9 Gene

Genomics for ABCB9 Gene

Regulatory Elements for ABCB9 Gene

Transcription factor binding sites by QIAGEN in the ABCB9 gene promoter:

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ABCB9 Gene

Start:
122,920,178 bp from pter
End:
122,981,649 bp from pter
Size:
61,472 bases
Orientation:
Minus strand

Genomic View for ABCB9 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ABCB9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ABCB9 Gene

Proteins for ABCB9 Gene

  • Protein details for ABCB9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NP78-ABCB9_HUMAN
    Recommended name:
    ATP-binding cassette sub-family B member 9
    Protein Accession:
    Q9NP78
    Secondary Accessions:
    • B4E2J0
    • Q5W9G7
    • Q769F3
    • Q769F4
    • Q96AB1
    • Q9P208

    Protein attributes for ABCB9 Gene

    Size:
    766 amino acids
    Molecular mass:
    84475 Da
    Quaternary structure:
    • Homodimer.
    SequenceCaution:
    • Sequence=BAA96044.2; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=BAD66830.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for ABCB9 Gene

neXtProt entry for ABCB9 Gene

Proteomics data for ABCB9 Gene at MOPED

Selected DME Specific Peptides for ABCB9 Gene

Post-translational modifications for ABCB9 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Antibody Products

Domains for ABCB9 Gene

Gene Families for ABCB9 Gene

HGNC:
  • ABCB :ATP binding cassette transporters / subfamily B
IUPHAR :

Protein Domains for ABCB9 Gene

Graphical View of Domain Structure for InterPro Entry

Q9NP78

UniProtKB/Swiss-Prot:

ABCB9_HUMAN :
  • Q9NP78
Domain:
  • The N-terminal region comprising the first four transmembrane domains is required for lysosomal localization but not for homodimerization or peptide transport.
  • Contains 1 ABC transmembrane type-1 domain.
  • Contains 1 ABC transporter domain.
Family:
  • Belongs to the ABC transporter superfamily. ABCB family. MHC peptide exporter (TC 3.A.1.209) subfamily.
genes like me logo Genes that share domains with ABCB9: view

Function for ABCB9 Gene

Molecular function for ABCB9 Gene

GENATLAS Biochemistry:
ATP binding cassette superfamily,subfamily B (MDR/TAP),member 9
UniProtKB/Swiss-Prot BiophysicochemicalProperties:
Kinetic parameters: KM=6.8 uM for peptide RRYQNSTCL {ECO:0000269 PubMed:15863492}; pH dependence: Optimum pH is 7.0. {ECO:0000269 PubMed:15863492}; Temperature dependence: Optimum temperature is 37 degrees Celsius. {ECO:0000269 PubMed:15863492};
UniProtKB/Swiss-Prot Function:
ATP-dependent low-affinity peptide transporter which translocates a broad spectrum of peptides from the cytosol to the lysosomal lumen. Displays a broad peptide length specificity from 6-mer up to at least 59-mer peptides with an optimum of 23-mers. Favors positively charged, aromatic or hydrophobic residues in the N- and C-terminal positions whereas negatively charged residues as well as asparagine and methionine are not favored.
UniProtKB/Swiss-Prot Induction:
Not induced by interferon-gamma.

Enzyme Numbers (IUBMB) for ABCB9 Gene

Gene Ontology (GO) - Molecular Function for ABCB9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 22641697
GO:0005524 ATP binding IDA 15863492
GO:0015421 oligopeptide-transporting ATPase activity TAS --
GO:0015440 peptide-transporting ATPase activity IDA 17977821
GO:0016887 ATPase activity --
genes like me logo Genes that share ontologies with ABCB9: view
genes like me logo Genes that share phenotypes with ABCB9: view

Animal Model Products

miRNA for ABCB9 Gene

miRTarBase miRNAs that target ABCB9

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ABCB9

In Situ Assay Products

Flow Cytometry Products

No data available for Animal Models , Transcription Factor Targeting and HOMER Transcription for ABCB9 Gene

Localization for ABCB9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ABCB9 Gene

Lysosome membrane; Multi-pass membrane protein. Note=May be located in membrane rafts.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ABCB9 Gene COMPARTMENTS Subcellular localization image for ABCB9 gene
Compartment Confidence
lysosome 5
vacuole 5
endoplasmic reticulum 3
plasma membrane 3

Gene Ontology (GO) - Cellular Components for ABCB9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005764 lysosome IDA 22641697
GO:0005765 lysosomal membrane TAS --
GO:0005769 NOT early endosome IDA 17977821
GO:0005783 NOT endoplasmic reticulum IDA 17977821
GO:0016021 integral component of membrane IDA 18434309
genes like me logo Genes that share ontologies with ABCB9: view

Pathways for ABCB9 Gene

SuperPathways for ABCB9 Gene

genes like me logo Genes that share pathways with ABCB9: view

Pathways by source for ABCB9 Gene

2 KEGG pathways for ABCB9 Gene

Interacting Proteins for ABCB9 Gene

Gene Ontology (GO) - Biological Process for ABCB9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002474 NOT antigen processing and presentation of peptide antigen via MHC class I IDA 17977821
GO:0006200 obsolete ATP catabolic process --
GO:0006810 transport --
GO:0008152 metabolic process IEA --
GO:0015031 protein transport IEA --
genes like me logo Genes that share ontologies with ABCB9: view

Compounds for ABCB9 Gene

(1) Novoseek inferred chemical compound relationships for ABCB9 Gene

Compound -log(P) Hits PubMed IDs
atp 43.1 7
genes like me logo Genes that share compounds with ABCB9: view

Transcripts for ABCB9 Gene

Unigene Clusters for ABCB9 Gene

ATP-binding cassette, sub-family B (MDR/TAP), member 9:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ABCB9

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ABCB9 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b · 10c ^ 11 ^ 12a · 12b · 12c ^ 13 ^ 14a · 14b · 14c ^ 15 ^ 16 ^ 17a · 17b
SP1: - - - - - -
SP2: - - - - -
SP3: - -
SP4: - -
SP5: -
SP6: - - -
SP7: -
SP8: - -

Relevant External Links for ABCB9 Gene

GeneLoc Exon Structure for
ABCB9
ECgene alternative splicing isoforms for
ABCB9

Expression for ABCB9 Gene

mRNA expression in normal human tissues for ABCB9 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues for ABCB9 Gene

This gene is overexpressed in Synovial fluid (55.2) and Lung (8.1).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for ABCB9 Gene

SOURCE GeneReport for Unigene cluster for ABCB9 Gene Hs.511951

mRNA Expression by UniProt/SwissProt for ABCB9 Gene

Q9NP78-ABCB9_HUMAN
Tissue specificity: Highly expressed in testis, and at moderate levels in brain, spinal cord, and thyroid. Not expressed in monocytes but strongly expressed during differentiation of monocytes to dendritic cells and macrophages.
genes like me logo Genes that share expressions with ABCB9: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and Expression partners for ABCB9 Gene

Orthologs for ABCB9 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for ABCB9 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia ABCB9 35
  • 90.36 (n)
  • 92.67 (a)
ABCB9 36
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ABCB9 35
  • 90.12 (n)
  • 93.34 (a)
VPS37B 36
  • 93 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Abcb9 35
  • 89.06 (n)
  • 94.23 (a)
Abcb9 16
Abcb9 36
  • 94 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia ABCB9 35
  • 99.48 (n)
  • 100 (a)
ABCB9 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Abcb9 35
  • 89.46 (n)
  • 94.09 (a)
oppossum
(Monodelphis domestica)
Mammalia ABCB9 36
  • 87 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ABCB9 36
  • 81 (a)
OneToOne
chicken
(Gallus gallus)
Aves ABCB9 35
  • 76.06 (n)
  • 76.94 (a)
ABCB9 36
  • 73 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ABCB9 36
  • 73 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia abcb9 35
  • 62.36 (n)
  • 63.07 (a)
zebrafish
(Danio rerio)
Actinopterygii abcb9 35
  • 59.58 (n)
  • 55.75 (a)
Dr.19520 35
abcb9 36
  • 53 (a)
OneToOne
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.11832 35
fruit fly
(Drosophila melanogaster)
Insecta CG10226 37
  • 54 (a)
worm
(Caenorhabditis elegans)
Secernentea haf-4 35
  • 50.25 (n)
  • 43.27 (a)
haf-2 36
  • 37 (a)
ManyToMany
haf-3 36
  • 30 (a)
ManyToMany
haf-4 36
  • 38 (a)
ManyToMany
haf-7 36
  • 30 (a)
ManyToMany
haf-8 36
  • 35 (a)
ManyToMany
haf-9 36
  • 37 (a)
ManyToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes MDL1 36
  • 28 (a)
ManyToMany
MDL2 36
  • 27 (a)
ManyToMany
rice
(Oryza sativa)
Liliopsida Os.11762 35
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 42 (a)
ManyToMany
CSA.2338 36
  • 41 (a)
ManyToMany
Species with no ortholog for ABCB9:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ABCB9 Gene

ENSEMBL:
Gene Tree for ABCB9 (if available)
TreeFam:
Gene Tree for ABCB9 (if available)

Paralogs for ABCB9 Gene

Paralogs for ABCB9 Gene

genes like me logo Genes that share paralogs with ABCB9: view

Variants for ABCB9 Gene

Sequence variations from dbSNP and Humsavar for ABCB9 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs1504919 -- 122,922,942(-) GTGGC(A/G)TGTGC intron-variant
rs1553230 -- 122,942,618(+) catct(A/C/T)aaaaa intron-variant
rs2270788 -- 122,929,802(-) CTGAA(A/G)GACGA utr-variant-3-prime, intron-variant, downstream-variant-500B
rs2343106 -- 122,927,075(-) tccca(C/T)agtac intron-variant
rs2343682 -- 122,929,049(+) ACCTA(C/G/T)TGCAA utr-variant-3-prime, intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ABCB9 Gene

Variant ID Type Subtype PubMed ID
dgv1497n71 CNV Loss 21882294
nsv517200 CNV Loss 19592680
dgv22n68 CNV Loss 17160897
nsv455732 CNV Loss 19166990
nsv899577 CNV Loss 21882294

Relevant External Links for ABCB9 Gene

HapMap Linkage Disequilibrium report
ABCB9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ABCB9 Gene

Disorders for ABCB9 Gene

Relevant External Links for ABCB9

Genetic Association Database (GAD)
ABCB9
Human Genome Epidemiology (HuGE) Navigator
ABCB9

No disorders were found for ABCB9 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for ABCB9 Gene

Publications for ABCB9 Gene

  1. Characterization of ABCB9, an ATP binding cassette protein associated with lysosomes. (PMID: 10748049) Zhang F. … Ling V. (J. Biol. Chem. 2000) 3 4 23
  2. Gene organization of human transporter associated with antigen processing-like (TAPL, ABCB9): analysis of alternative splicing variants and promoter activity. (PMID: 13679046) Kobayashi A. … Maeda M. (Biochem. Biophys. Res. Commun. 2003) 3 4 23
  3. Membrane localization of transporter associated with antigen processing (TAP)-like (ABCB9) visualized in vivo with a fluorescence protein-fusion technique. (PMID: 15577206) Kobayashi A. … Maeda M. (Biol. Pharm. Bull. 2004) 3 4 23
  4. Selective and ATP-dependent translocation of peptides by the homodimeric ATP binding cassette transporter TAP-like (ABCB9). (PMID: 15863492) Wolters J.C. … Tampe R. (J. Biol. Chem. 2005) 3 4 23
  5. Biochemical characterization of transporter associated with antigen processing (TAP)-like (ABCB9) expressed in insect cells. (PMID: 18175933) Ohara T. … Maeda M. (Biol. Pharm. Bull. 2008) 3 4 23

Products for ABCB9 Gene

Sources for ABCB9 Gene

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