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Aliases & Descriptions for ABCB7
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| ABC7 2, 3, 5 | | ASAT 1, 2, 5 | | Atm1p 1, 2 | | EST140535 1, 2 | | OTTHUMP00000023578 2 |
| | | Descriptions |
|---|
| ABC transporter 7 protein 3 | | ATP-binding cassette 7 2 | | ATP-binding cassette transporter 7 3 | | ATP-binding cassette, sub-family B (MDR/TAP), member 7 2 | | ATP-binding cassette, sub-family B, member 7 2 |
|
| | Search outside databases for aliases for ABCB7 genePrevious GC identifers: GC0XM070074 GC0XM071447 GC0XM072487 GC0XM073139 GC0XM074056 |
Summaries for ABCB7(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for ABCB7: The membrane-associated protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC) transporters. ABC proteins transport various molecules across extra- and intra-cellular membranes. ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, White). This protein is a member of the MDR/TAP subfamily. Members of the MDR/TAP subfamily are involved in multidrug resistance as well as antigen presentation. This gene encodes a half-transporter involved in the transport of heme from the mitochondria to the cytosol. With iron/sulfur cluster precursors as its substrates, this protein may play a role in metal homeostasis. Mutations in this gene have been implicated in X-linked sideroblastic anemia with ataxia. [provided by RefSeq] UniProtKB/Swiss-Prot: ABCB7_HUMAN, O75027Function: Could be involved in the transport of heme from the mitochondria to the cytosol. Plays a central role in the maturation of cytosolic iron-sulfur (Fe/S) cluster-containing proteinsGene Wiki entry for ABCB7 |
Genomic Location for ABCB7
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the ABCB7 gene 
Entrez Gene cytogenetic band: Xq12-q13 Ensembl cytogenetic band: Xq13.3 HGNC cytogenetic band: Xq13.3ABCB7 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome X GeneLoc Exon Structure GeneLoc location for GC0XM074189:
(about GC identifiers)
Start:
|
74,189,830 bp from pter |
End:
|
74,292,857 bp from pter |
Size:
|
103,028 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000023.9 NT_011669.16
| Proteins for ABCB7
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: ABCB7_HUMAN, O75027 (See
protein sequence)Recommended Name: ATP-binding cassette sub-family B member 7, mitochondrial precursor Size: 752 amino acids; 82641 Da
Subunit: Homodimer or heterodimer (Potential)
Subcellular location: Mitochondrion inner membrane; Multi-pass membrane protein (Potential)
Secondary accessions: O75345 Q5VWY7 Q5VWY8 Q9BRE1 Q9UND1 Q9UP01Alternative splicing: 2 isoforms: O75027-1 O75027-2 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_004290.2
ENSEMBL proteins: ENSP00000343849 ENSP00000253577 ENSP00000362492
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
4 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for ABCB7: Assays for ABCB7: | Protein
Domains/ Families for ABCB7(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry O75027
ProtoNet protein and cluster: O75027 UniProtKB/Swiss-Prot: ABCB7_HUMAN, O75027Similarity: Belongs to the ABC transporter family. Heavy Metal importer (TC 3.A.1.210) subfamilySimilarity: Contains 1 ABC transmembrane type-1 domainSimilarity: Contains 1 ABC transporter domain | Gene Function for ABCB7
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004299
Applied Biosystems Silencer® siRNAs for ABCB7
Sigma-Aldrich siRNA and siRNA Panels for ABCB7  Sigma-Aldrich shRNA for ABCB7  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_004299                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004299                                  untagged cDNA clone in CMV expression vector: NM_004299 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004299
UniProtKB/Swiss-Prot: ABCB7_HUMAN, O75027Function: Could be involved in the transport of heme from the mitochondria to the cytosol. Plays a central role in the maturation of cytosolic iron-sulfur (Fe/S) cluster-containing proteinsGenatlas biochemistry entry for ABCB7:ATP binding cassette superfamily,subfamily B (MDR/TAP),member 7,mouse ABC7 and yeast Atm1p homolog,ubiquitously expressed,located in the mitochondrial inner membrane11 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Abcb7):
5 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for ABCB7
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for ABCB7 
3 Interacting proteins for ABCB7 (ENSP000002535773) via UniProtKB, MINT, and/or STRINGAbout this table
2 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for ABCB7(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for ABCB7 10/28 Novoseek chemical compound relationships for ABCB7 gene (see all 28
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| urea |
44.38 |
14 |
1803931 (2), 15844399 (2), 8378031 (2), 16896724 (1) (see all 11) |
| uric acid |
41.65 |
11 |
8378031 (3), 17590199 (1), 17913676 (1), 16638699 (1) (see all 9) |
| cholesterol |
40.53 |
17 |
8766592 (2), 1771866 (2), 8097894 (1), 16138865 (1) (see all 13) |
| iron |
27.65 |
13 |
12480705 (3), 10196363 (2), 19046159 (1), 17913676 (1) (see all 9) |
| iron-sulfur |
27.36 |
3 |
12480705 (3) |
| ethanol |
20.00 |
1 |
1287266 (1) |
| magnesium |
17.71 |
7 |
8378031 (2), 1780819 (1), 1443440 (1), 17493165 (1) (see all 6) |
| protoporphyrin ix |
14.76 |
1 |
11843825 (1) |
| sodium |
12.55 |
6 |
17913676 (1), 17494297 (1), 10584179 (1), 1441715 (1) (see all 6) |
| glucose |
12.53 |
13 |
1803931 (3), 8941472 (2), 17913676 (1), 15534665 (1) (see all 10) |
About this table
|
Transcripts for ABCB7(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004299
Sigma-Aldrich siRNA and siRNA Panels for ABCB7  Sigma-Aldrich shRNA for ABCB7  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_004299 REFSEQ mRNAs for ABCB7 gene: NM_004299.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004299               OriGene GFP tagged cDNA clone in CMV expression vector: NM_004299                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004299                                  untagged cDNA clone in CMV expression vector: NM_004299  Additional cDNA sequence: AF038950.1 AF078777.1 AF133659.1 AK001418.1 AK294657.1 AK307414.1 BC006323.2 BT009918.1 BX537833.1 BX648420.1 CR612563.1 U66679.1 15 DOTS entries: DT.448190 DT.92034779 DT.91740872 DT.121279798 DT.92003533 DT.95200092 DT.100742050 DT.102828440 DT.100668417 DT.121279779 DT.121279792 DT.65288079 DT.91740870 DT.91837463 DT.75107232 24/141 AceView cDNA sequences (see all 141
):AA282065 CA418036 AA363683 BP381710 BT009918 AA767655 AA305099 AI128014 BF108755 NM_004299 CR612563 BF001423 AK001418 AW271773 AA974072 BM662767 AI338551 BX355370 AA226777 AA403130 CA314242 F34862 BM975299 BX537833
highest scoring ESTs for ABCB7:AA226777 AA282065 AA305099 AA732107 AA766839 AA810091 AA810484 AA815080 AA923765 AA971952 Unigene Cluster for ABCB7: ATP-binding cassette, sub-family B (MDR/TAP), member 7 Hs.370480 [show with all ESTs]Unigene Representative Sequence: BX648420
GeneLoc Exon Structure
5 Alternative Splicing Database (ASD) splice patterns (SP) for ABCB7
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7a | · | 7b | ^ | 8 | ^ | 9a | · | 9b | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13a | · | 13b | · | 13c | ^ | 14 | ^ | 15 | ^ | 16a | · | 16b | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for ABCB7
3 Ensembl transcripts including schematic representations: ENST00000339447
ENST00000253577
ENST00000373394
|
Expression for ABCB7
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| ABCB7 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for ABCB7
1 / 2 / 3 3 probe-sets matching ABCB7 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: ATAACCCCAA
SOURCE GeneReport for Unigene cluster: Hs.370480
Expression variation in blood from EXPOLDB for ABCB7 |
Orthologs for ABCB7
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ABCB7 gene from 5/23 species (see all 23
)
| Organism |
Gene |
Locus |
Description |
Human Similarity |
NCBI accessions |
dog (Canis familiaris) |
ABCB71 |
-- |
ATP-binding cassette, sub-family B (MDR/TAP), member more |
92.69(n) 92.69(a) |
491967 XM_549087.2 XP_549087.1 |
cow (Bos taurus) |
ABCB71 |
-- |
ATP-binding cassette, sub-family B (MDR/TAP), member more |
94.73(n) 94.97(a) |
533669 XM_613148.3 XP_613148.2 |
rat (Rattus norvegicus) |
Abcb71 |
-- |
ATP-binding cassette, sub-family B (MDR/TAP), member more |
90.03(n) 92.55(a) |
302395 NM_212518.1 NP_997683.1 |
mouse (Mus musculus) |
Abcb75 |
X (39.00 cM) |
ATP-binding cassette, sub-family B (MDR/TAP), member more |
-- |
U43892 |
chicken (Gallus gallus) |
ABCB71 |
-- |
ATP-binding cassette, sub-family B (MDR/TAP), member more |
79.41(n) 83.33(a) |
422326 XM_420301.2 XP_420301.1 |
About this table Species with no ortholog for ABCB7
ENSEMBL Gene Tree for ABCB7 | Paralogs for ABCB7(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for ABCB7 gene
- ABCB62
|
SNPs/Variants for ABCB7(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for ABCB7 (up to first 250kb)
|
Disorders & Mutations for ABCB7
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 300135 disorders: 301310 UniProtKB/Swiss-Prot: ABCB7_HUMAN, O75027
Defects in ABCB7 are the cause of X-linked sideroblastic anemia with ataxia (ASAT) [MIM:301310]. ASAT is a recessive disorder characterized by an infantile to early childhood onset of nonprogressive cerebellar ataxia and mild anemia with hypochromia and microcytosis10/47 Novoseek disease relationships for ABCB7 gene (see all 47
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| anemia sideroblastic |
78.31 |
7 |
12938016 (1), 12480705 (1), 15506716 (1), 18398482 (1) (see all 6) |
| anemia congenital sideroblastic |
73.11 |
1 |
16870250 (1) |
| liver diseases |
58.09 |
4 |
8266011 (1), 11594118 (1), 1350376 (1), 7916242 (1) |
| alcohol abuse |
54.39 |
2 |
9547899 (1), 1350376 (1) |
| hepatitis chronic active |
47.69 |
2 |
9144972 (2) |
| hepatomegaly |
44.36 |
2 |
7987443 (1), 9014018 (1) |
| alcoholism |
41.62 |
2 |
7674678 (1), 10798586 (1) |
| liver damage |
40.27 |
2 |
1803931 (1), 11875752 (1) |
| fatty liver |
38.14 |
2 |
11063160 (1) |
| hepatitis |
36.48 |
5 |
17059345 (1), 1407210 (1), 1305279 (1), 10052474 (1) (see all 5) |
About this table
1 PharmGKB disease relationship for ABCB7 geneAbout this table
GeneTests: ABCB7 X-Linked Sideroblastic Anemia and Ataxia Human Gene Mutation Database: ABCB7 Human Genome Epidemiology Navigator: ABCB7 (2 documents)
|
Medical News for ABCB7(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for ABCB7 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/206 PubMed articles for ABCB7 gene (see all 206
):- Human ABC7 transporter: gene structure and mutation causing X-linked sideroblastic anemia with ataxia with disruption of cytosolic iron- sulfur protein maturation. (PubMed id 11050011)1, 3, 4 Bekri S....Bishop D.F. (2000)
- X-linked cerebellar ataxia and sideroblastic anaemia associated with a missense mutation in the ABC7 gene predicting V411L. (PubMed id 11843825)1, 3, 4 Maguire A.... May A. (2001)
- Mutation of a putative mitochondrial iron transporter gene (ABC7) in X-linked sideroblastic anemia and ataxia (XLSA/A). (PubMed id 10196363)1, 3, 4 Allikmets R....Koeller D.M. (1999)
- Isolation and chromosomal mapping of a novel ATP-binding cassette transporter conserved in mouse and human. (PubMed id 9143506)1, 2, 3 Savary S....Chimini G. (1997)
- The DNA sequence of the human X chromosome. (PubMed id 15772651)3, 4 Ross M.T.... Bentley D.R. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Identification of genes expressed in human CD34(+) hematopoietic stem/progenitor cells by expressed sequence tags and efficient full-length cDNA cloning. (PubMed id 9653160)3, 4 Mao M....Chen Z. (1998)
- Identification of a human mitochondrial ABC transporter, the functional orthologue of yeast Atm1p. (PubMed id 9883897)3, 4 Csere P.... Kispal G. (1998)
- Cloning and chromosomal mapping of a novel ABC transporter gene (hABC7), a candidate for X-linked sideroblastic anemia with spinocerebellar ataxia. (PubMed id 9621516)3, 4 Shimada Y....Takahashi E. (1998)
- Involvement of ABC7 in the biosynthesis of heme in erythroid cells: interaction of ABC7 with ferrochelatase. (PubMed id 12480705)1, 3 Taketani S....Furukawa T. (2003)
|
Search for ABCB7
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing ABCB7
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing ABCB7
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ABCB7(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| GeneReviews | http://www.genetests.org/query?gene=ABCB7 |
|
| | | About This Section
| --
| Services for ABCB7(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for ABCB7:

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