ABCB11 Gene
protein-coding GIFtS : 60
GC02M169487
ATP-binding cassette, sub-family B (MDR/TAP), member 11 (Previous name: progressive familial intrahepatic cholestasis 2 )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbols: BSEP, PFIC2 )
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Aliases & Descriptions for ABCB11
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ABC16 1 , 2 BRIC2 2 , 5 BSEP 2 , 3 , 5 PFIC-2 1 , 2 PFIC2 2 , 5 PGY4 1 , 2 SPGP 1 , 2 , 5
Descriptions ABC member 16, MDR/TAP subfamily 2 ATP-binding cassette sub-family B member 11 3 ATP-binding cassette, sub-family B (MDR/TAP), member 11 2 bile salt export pump 2 progressive familial intrahepatic cholestasis 2 1 , 2 sister p-glycoprotein 2
Search outside databases for aliases for ABCB11 genePrevious GC identifers: GC02M167831 GC02M168321 GC02M169743 GC02M169981 GC02M169604
Summaries for ABCB11 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for ABCB11 : The membrane-associated protein encoded by this gene is a member of the superfamily of ATP-bindingcassette (ABC) transporters. ABC proteins transport various molecules across extra- andintra-cellular membranes. ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP,MRP, ALD, OABP, GCN20, White). This protein is a member of the MDR/TAP subfamily. Members of theMDR/TAP subfamily are involved in multidrug resistance. The protein encoded by this gene is themajor canalicular bile salt export pump in man. Mutations in this gene cause a form of progressivefamilial intrahepatic cholestases which are a group of inherited disorders with severe cholestaticliver disease from early infancy. [provided by RefSeq] UniProtKB/Swiss-Prot: ABCBB_HUMAN, O95342 Function : Involved in the ATP-dependent secretion of bile salts into the canaliculus of hepatocytes
Genomic Location for ABCB11
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the ABCB11 gene Entrez Gene cytogenetic band: 2q24 Ensembl cytogenetic band: 2q31.1 HGNC cytogenetic band: 2q24 ABCB11 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure
GeneLoc location for GC02M169487:
(about GC identifiers )
Start:
169,487,694 bp from pter
End:
169,596,079 bp from pter
Size:
108,386 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000002.10 NT_005403.16 Proteins for ABCB11
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: ABCBB_HUMAN, O95342 (See
protein sequence )Recommended Name: Bile salt export pump Size : 1321 amino acids; 146393 Da
Subcellular location : Membrane; Multi-pass membrane protein
Secondary accessions : Q9UNB2
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_003733.2 ENSEMBL proteins: ENSP00000263817 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for ABCB11: Assays for ABCB11:
Protein
Domains/ Families for ABCB11(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry O95342 ProtoNet protein and cluster: O95342
UniProtKB/Swiss-Prot: ABCBB_HUMAN, O95342 Domain : Multifunctional polypeptide with two homologous halves, each containing an hydrophobicmembrane-anchoring domain and an ATP binding cassette (ABC) domain Similarity : Belongs to the ABC transporter family. Multidrug resistance exporter (TC 3.A.1.201)subfamily Similarity : Contains 2 ABC transmembrane type-1 domainsSimilarity : Contains 2 ABC transporter domains
Gene Function for ABCB11
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003742 Applied Biosystems Silencer ® siRNAs for ABCB11 Sigma-Aldrich siRNA and siRNA Panels for ABCB11 Sigma-Aldrich shRNA for ABCB11 Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_003742                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003742                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_003742  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003742 UniProtKB/Swiss-Prot: ABCBB_HUMAN, O95342 Function : Involved in the ATP-dependent secretion of bile salts into the canaliculus of hepatocytesBiophysicochemical properties : Kinetic parameters: KM=30.4 uM for taurocholate; Vmax=232pmol/min/mg enzyme for taurocholate transport;
Genatlas biochemistry entry for ABCB11 :ATP binding cassette superfamily,subfamily B (MDR/TAP) member 11,expressed in the canalicularmicrovilli and subcanicular vesicles of the hepatocytes
3 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Abcb11) :5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6
):
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Pathways & Interactions for ABCB11
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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4 Sigma-Aldrich "Your Favorite Gene" Pathways for ABCB11 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for ABCB11 5/24 Interacting proteins for ABCB11 (ENSP00000263817 3 ) via UniProtKB, MINT, and/or STRING (see all 24
)About this table 1 Gene Ontology (GO) biological process term (links to tree view) :
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Drugs & Compounds for ABCB11 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for ABCB11 10/30 Novoseek chemical compound relationships for ABCB11 gene (see all 30
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
bodipy-verapamil
84.25
2
1681415 (1), 15308763 (1)
azidopine
74.37
1
1360010 (1)
gf 120918
72.18
3
16940108 (1), 12384350 (1)
tariquidar
71.80
6
19034106 (3), 15986399 (2)
rhodamine 123
71.72
5
7646552 (1), 7504150 (1), 10617675 (1), 7929531 (1) (see all 5 )
colchicine
68.78
4
9220975 (1), 15049699 (1), 7909160 (1), 9551613 (1)
vanadate
63.81
1
9482283 (1)
ly335979
62.16
1
16940108 (1)
atp
57.73
34
16505485 (2), 8093688 (2), 12404240 (2), 16489767 (2) (see all 25 )
cholic acid
46.68
3
14684751 (3)
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Transcripts for ABCB11(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
OriGene , Expression Assays from Applied Biosystems )About This Section
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003742 Sigma-Aldrich siRNA and siRNA Panels for ABCB11 Sigma-Aldrich shRNA for ABCB11 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_003742
REFSEQ mRNAs for ABCB11 gene: NM_003742.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003742
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003742                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003742                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_003742  
Additional cDNA sequence: AB012959.1 AF091582.1 AF136523.1 AK302540.1 AK303050.1
4 DOTS entries : DT.92072028 DT.91751051 DT.97804514 DT.401532
21 AceView cDNA sequences :AA718934 AI247467 NM_003742 AB012959 BV198883 CB161905 AF091582 BX110920 AA682405 BV198828 CD617437 BM312770 CD617439 BM312461 BX494965 BX494964 AA345915 AF136523 AI052627 CB161524 R91010
highest scoring ESTs for ABCB11 :AF091582 AF136523 CD617436 CD617437 CD617438 CD617439 NM_003742 AB012959 AV688259 BF876579
Unigene Cluster for ABCB11: ATP-binding cassette, sub-family B (MDR/TAP), member 11 Hs.658439 [show with all ESTs ] Unigene Representative Sequence: AF091582 GeneLoc Exon Structure 1 Ensembl transcript including schematic representation : ENST00000263817
Expression for ABCB11
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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ABCB11 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for ABCB11 1 / 2 / 3
5 probe-sets matching ABCB11 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AGCTTTCCAGSOURCE GeneReport for Unigene cluster: Hs.658439 Expression variation in blood from EXPOLDB for ABCB11
UniProtKB/Swiss-Prot: ABCBB_HUMAN, O95342 Tissue specificity : Expressed predominantly, if not exclusively in the liver, where it was furtherlocalized to the canalicular microvilli and to subcanalicular vesicles of the hepatocytes by insitu (By similarity)
Orthologs for ABCB11
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for ABCB11 gene from 5/9 species (see all 9
)
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
dog (Canis familiaris)
ABCB111
--
ATP-binding cassette, sub-family B (MDR/TAP), member more
89.07(n) 89.7(a)
488390 XM_545512.2 XP_545512.2
chimpanzee (Pan troglodytes)
ABCB111
--
ATP-binding cassette, sub-family B (MDR/TAP), member more
99.22(n) 99.32(a)
470717 XM_526100.2 XP_526100.2
cow (Bos taurus)
ABCB111
--
ATP-binding cassette, sub-family B (MDR/TAP), member more
88.87(n) 88.27(a)
531150 XM_609636.3 XP_609636.3
mouse (Mus musculus)
Abcb111 , 5
2 (38.40 cM) 5
ATP-binding cassette, sub-family B (MDR/TAP), member more 1, 5
83.14(n) 1 82.03(a) 1
27413 1 NM_021022.3 1 NP_066302.2 1 AA066341 5 AF133903 5 (see all 15 )
zebrafish (Danio rerio)
Dr.287002
--
Transcribed sequence with weak similarity to protein more
76.33(n)
57049999
About this table Species with no ortholog for ABCB11 ENSEMBL Gene Tree for ABCB11 Paralogs for ABCB11 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for ABCB11 gene ABCB1 2 SNRNP35 2 ABCB4 2
SNPs/Variants for ABCB11 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for ABCB11 (up to first 250kb)
Disorders & Mutations for ABCB11
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 603201 disorders : 601847 605479 UniProtKB/Swiss-Prot: ABCBB_HUMAN, O95342
Defects in ABCB11 are the cause of progressive familial intrahepatic cholestasis type 2(PFIC2) [MIM:601847]. PFIC2 is an inherited liver disease of childhood which is characterized bycholestasis and normal serum gamma-glutamyltransferase activity. Defects in ABCB11 are also foundin cases of chronic intrahepatic cholestasis without obvious familial history of chronic liverdisease Defects in ABCB11 are the cause of benign recurrent intrahepatic cholestasis type 2(BRIC2) [MIM:605479]. BRIC is characterized by intermittent episodes of cholestasis withoutprogression to liver failure. There is initial elevation of serum bile acids, followed bycholestatic jaundice which generally spontaneously resolves after periods of weeks to months. Thecholestatic attacks vary in severity and duration and patients are asymptomatic between episodes,both clinically and biochemically Genetic variations in ABCB11 may play a role in drug-induced cholestasis causing liverdamage
10/30 Novoseek disease relationships for ABCB11 gene (see all 30
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
pfic2
91.74
20
16039748 (4), 11172067 (3), 9806540 (2), 18487280 (1) (see all 8 )
pfic3
85.52
2
17241866 (1)
cholestasis intrahepatic
83.57
33
16039748 (3), 11172067 (3), 11815775 (2), 11870371 (1) (see all 16 )
byler disease
80.71
8
16819395 (1), 19133130 (1), 17241866 (1)
colchicine resistance
73.97
2
15049699 (1), 7909160 (1)
cholestasis
67.44
25
17264802 (4), 17108234 (1), 12739759 (1), 11230744 (1) (see all 11 )
cancer
33.69
18
17640301 (2), 16875827 (1), 12678765 (1), 1681415 (1) (see all 16 )
liver diseases
30.92
3
12536246 (1), 14699511 (1), 18509747 (1)
biliary cirrhosis primary
24.99
3
14999697 (2)
leukemia
23.66
2
10456672 (1), 7907642 (1)
About this table GeneTests: ABCB11 Low Gamma-GT Familial Intrahepatic Cholestasis Human Gene Mutation Database : ABCB11 Genetic Association Database: ABCB11 Human Genome Epidemiology Navigator: ABCB11 (15 documents)
Medical News for ABCB11 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for ABCB11 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/319 PubMed articles for ABCB11 gene (see all 319
): Sequence analysis of bile salt export pump (ABCB11) and multidrug resistance p-glycoprotein 3 (ABCB4, MDR3) in patients with intrahepatic cholestasis of pregnancy. (PubMed id 15077010) 1, 3, 4, 6 Pauli-Magnus C.... Kullak-Ublick G.A. (2004) A gene encoding a liver-specific ABC transporter is mutated in progressive familial intrahepatic cholestasis. (PubMed id 9806540) 1, 2, 3, 4 Strautnieks S.S.... Thompson R.J. (1998) Impaired expression and function of the bile salt export pump due to three novel ABCB11 mutations in intrahepatic cholestasis. (PubMed id 16039748) 1, 3, 4 Noe J.... Pauli-Magnus C. (2005) BSEP and MDR3 haplotype structure in healthy Caucasians, primary biliary cirrhosis and primary sclerosing cholangitis. (PubMed id 14999697) 1, 3, 6 Pauli-Magnus C....Meier P.J. (2004) Mutations and polymorphisms in the bile salt export pump and the multidrug resistance protein 3 associated with drug-induced liver injury. (PubMed id 17264802) 1, 3, 4 Lang C.... Pauli-Magnus C. (2007) FIC1 and BSEP defects in Taiwanese patients with chronic intrahepatic cholestasis with low gamma-glutamyltranspeptidase levels. (PubMed id 11815775) 1, 3, 4 Chen H.-L.... Chang M.-H. (2002) Genetic variability, haplotype structures, and ethnic diversity of hepatic transporters MDR3 (ABCB4) and bile salt export pump (ABCB11). (PubMed id 16763017) 3, 4 Lang T.... Kerb R. (2006) Benign recurrent intrahepatic cholestasis type 2 is caused by mutations in ABCB11. (PubMed id 15300568) 3, 4 van Mil S.W.C.... Klomp L.W.J. (2004) Association of single nucleotide polymorphisms of the bile salt export pump gene with intrahepatic cholestasis of pregnancy. (PubMed id 12825874) 3, 6 Eloranta M.L....Heinonen S. (2003) Three hundred twenty-six genetic variations in genes encoding nine members of ATP-binding cassette, subfamily B (ABCB/MDR/TAP), in the Japanese population. (PubMed id 11829140) 3, 4 Saito S.... Nakamura Y. (2002)
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Genome Databases showing ABCB11
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing ABCB11
(According to HUGE )
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Specialized Databases showing ABCB11 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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GeneReviews http://www.genetests.org/query?gene=ABCB11
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-- Services for ABCB11 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for ABCB11:
Search Tocris compounds for ABCB11
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GeneCards Homepage - Last full update: 1 Jul 2009
Incremental update: 13 Oct 2009