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Aliases for ABCA9-AS1 Gene

Subcategory (RNA class) for ABCA9-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ABCA9-AS1 Gene

  • ABCA9 Antisense RNA 1 2 3 5
  • ABCA9 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ABCA9-AS1 Gene

Previous GeneCards Identifiers for ABCA9-AS1 Gene

  • GC00U933962
  • GC17P067001

Summaries for ABCA9-AS1 Gene

GeneCards Summary for ABCA9-AS1 Gene

ABCA9-AS1 (ABCA9 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ABCA9-AS1 Gene

Genomics for ABCA9-AS1 Gene

Regulatory Elements for ABCA9-AS1 Gene

Enhancers for ABCA9-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G068908 1.3 Ensembl ENCODE 0.3 -34.6 -34583 3.7 PKNOX1 FOXA2 ATF1 SIN3A YY1 ZNF766 ZNF143 FOS YY2 ZHX2 ENSG00000267731 ENSG00000265100 ABCA8 ABCA10 GC17M068868 ABCA9-AS1
GH17G068937 0.9 ENCODE 0.4 -6.2 -6166 0.9 ELF3 HNRNPUL1 TBP FOXA2 NFIB MLX SIN3A RAD21 RARA YY1 ABCA8 ABCA9 ABCA9-AS1 GC17M068868
GH17G068956 0.7 Ensembl 0.4 +10.6 10570 0.2 PKNOX1 ATF1 SUZ12 NFIB GTF2E2 BMI1 CEBPG YY1 IRF9 SMAD5 ABCA8 ABCA9-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ABCA9-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ABCA9-AS1 Gene

Chromosome:
17
Start:
68,944,531 bp from pter
End:
69,042,784 bp from pter
Size:
98,254 bases
Orientation:
Plus strand

Genomic View for ABCA9-AS1 Gene

Genes around ABCA9-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ABCA9-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ABCA9-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ABCA9-AS1 Gene

Proteins for ABCA9-AS1 Gene

Post-translational modifications for ABCA9-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ABCA9-AS1 Gene

Domains & Families for ABCA9-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ABCA9-AS1 Gene

Function for ABCA9-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ABCA9-AS1 Gene

Localization for ABCA9-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ABCA9-AS1 Gene

Pathways & Interactions for ABCA9-AS1 Gene

SuperPathways for ABCA9-AS1 Gene

No Data Available

Interacting Proteins for ABCA9-AS1 Gene

Gene Ontology (GO) - Biological Process for ABCA9-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ABCA9-AS1 Gene

Drugs & Compounds for ABCA9-AS1 Gene

No Compound Related Data Available

Transcripts for ABCA9-AS1 Gene

mRNA/cDNA for ABCA9-AS1 Gene

(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ABCA9-AS1 Gene

No ASD Table

Relevant External Links for ABCA9-AS1 Gene

GeneLoc Exon Structure for
ABCA9-AS1
ECgene alternative splicing isoforms for
ABCA9-AS1

Expression for ABCA9-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ABCA9-AS1 Gene

genes like me logo Genes that share expression patterns with ABCA9-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ABCA9-AS1 Gene

Orthologs for ABCA9-AS1 Gene

Evolution for ABCA9-AS1 Gene

ENSEMBL:
Gene Tree for ABCA9-AS1 (if available)
TreeFam:
Gene Tree for ABCA9-AS1 (if available)

No data available for Orthologs for ABCA9-AS1 Gene

Paralogs for ABCA9-AS1 Gene

No data available for Paralogs for ABCA9-AS1 Gene

Variants for ABCA9-AS1 Gene

Sequence variations from dbSNP and Humsavar for ABCA9-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000036002 -- 69,004,262(+) TTTTG(A/G)TCTTT intron-variant, upstream-variant-2KB
rs1000174919 -- 69,013,845(+) TAGGA(G/T)CAAGT intron-variant
rs1000240268 -- 69,015,649(+) TTTAG(C/G)TGCCT intron-variant
rs1000527925 -- 69,008,648(+) CATTG(C/G)CATTT intron-variant
rs1000529384 -- 69,008,349(+) ATTAT(A/C)CTGAT intron-variant

Relevant External Links for ABCA9-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ABCA9-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ABCA9-AS1 Gene

Disorders for ABCA9-AS1 Gene

Relevant External Links for ABCA9-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ABCA9-AS1

No disorders were found for ABCA9-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ABCA9-AS1 Gene

Publications for ABCA9-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for ABCA9-AS1 Gene

Sources for ABCA9-AS1 Gene

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