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Aliases for ABCA17P Gene

Aliases for ABCA17P Gene

  • ATP Binding Cassette Subfamily A Member 17, Pseudogene 2 3 5
  • ATP-Binding Cassette, Sub-Family A (ABC1), Member 17, Pseudogene 2 3
  • ABCA17 3

External Ids for ABCA17P Gene

Previous GeneCards Identifiers for ABCA17P Gene

  • GC16U900657
  • GC16P002377
  • GC16P002316

Summaries for ABCA17P Gene

GeneCards Summary for ABCA17P Gene

ABCA17P (ATP Binding Cassette Subfamily A Member 17, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ABCA17P Gene

Genomics for ABCA17P Gene

Regulatory Elements for ABCA17P Gene

Promoters for ABCA17P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around ABCA17P on UCSC Golden Path with GeneCards custom track

Genomic Location for ABCA17P Gene

Chromosome:
16
Start:
2,339,150 bp from pter
End:
2,426,699 bp from pter
Size:
87,550 bases
Orientation:
Plus strand

Genomic View for ABCA17P Gene

Genes around ABCA17P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ABCA17P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ABCA17P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ABCA17P Gene

Proteins for ABCA17P Gene

Post-translational modifications for ABCA17P Gene

No Post-translational modifications

No data available for DME Specific Peptides for ABCA17P Gene

Domains & Families for ABCA17P Gene

Gene Families for ABCA17P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ABCA17P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ABCA17P Gene

Function for ABCA17P Gene

Animal Model Products

  • Taconic Biosciences Mouse Models for ABCA17P

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ABCA17P Gene

Localization for ABCA17P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ABCA17P Gene

Pathways & Interactions for ABCA17P Gene

SuperPathways for ABCA17P Gene

No Data Available

Interacting Proteins for ABCA17P Gene

Gene Ontology (GO) - Biological Process for ABCA17P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ABCA17P Gene

Drugs & Compounds for ABCA17P Gene

No Compound Related Data Available

Transcripts for ABCA17P Gene

mRNA/cDNA for ABCA17P Gene

(6) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ABCA17P Gene

ATP-binding cassette, sub-family A (ABC1), member 17, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ABCA17P Gene

No ASD Table

Relevant External Links for ABCA17P Gene

GeneLoc Exon Structure for
ABCA17P
ECgene alternative splicing isoforms for
ABCA17P

Expression for ABCA17P Gene

mRNA expression in normal human tissues for ABCA17P Gene

mRNA differential expression in normal tissues according to GTEx for ABCA17P Gene

This gene is overexpressed in Testis (x12.1).

SOURCE GeneReport for Unigene cluster for ABCA17P Gene Hs.376281

genes like me logo Genes that share expression patterns with ABCA17P: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for ABCA17P Gene

Orthologs for ABCA17P Gene

Evolution for ABCA17P Gene

ENSEMBL:
Gene Tree for ABCA17P (if available)
TreeFam:
Gene Tree for ABCA17P (if available)

No data available for Orthologs for ABCA17P Gene

Paralogs for ABCA17P Gene

No data available for Paralogs for ABCA17P Gene

Variants for ABCA17P Gene

Sequence variations from dbSNP and Humsavar for ABCA17P Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1994471 -- 2,344,207(-) AAAAA(A/C)AAAAA intron-variant
rs2171496 -- 2,344,348(-) atggc(A/G)gcgca intron-variant
rs2035650 -- 2,345,050(-) GAAGC(G/T)TATTT intron-variant
rs1545979 -- 2,345,869(-) agtga(C/G)ccgag intron-variant
rs2056410 -- 2,344,257(-) attgc(A/G)ccatt intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ABCA17P Gene

Variant ID Type Subtype PubMed ID
esv2422427 CNV Duplication 17116639
dgv2545n71 CNV Loss 21882294
nsv905139 CNV Loss 21882294
nsv457353 CNV Loss 19166990
nsv827512 CNV Gain 20364138
esv2673708 CNV Deletion 23128226
esv2750384 CNV Deletion 23290073
nsv833121 CNV Loss 17160897
esv272992 CNV Insertion 20981092
dgv2569n71 CNV Loss 21882294
dgv2570n71 CNV Loss 21882294
nsv905149 CNV Loss 21882294

Relevant External Links for ABCA17P Gene

HapMap Linkage Disequilibrium report
ABCA17P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ABCA17P Gene

Disorders for ABCA17P Gene

Relevant External Links for ABCA17P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ABCA17P

No disorders were found for ABCA17P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ABCA17P Gene

Publications for ABCA17P Gene

  1. The human ortholog of the rodent testis-specific ABC transporter Abca17 is a ubiquitously expressed pseudogene (ABCA17P) and shares a common 5' end with ABCA3. (PMID: 16968533) Piehler A.P. … Kaminski W.E. (BMC Mol. Biol. 2006) 2 3 67
  2. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. (PMID: 20210993) Zhang Z.D. … Gerstein M. (Genome Biol. 2010) 3
  3. The human ABC transporter pseudogene family: Evidence for transcription and gene-pseudogene interference. (PMID: 18405356) Piehler A.P. … Kaminski W.E. (BMC Genomics 2008) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for ABCA17P Gene

Sources for ABCA17P Gene

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