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Aliases for ABCA17P Gene

Aliases for ABCA17P Gene

  • ATP Binding Cassette Subfamily A Member 17, Pseudogene 2 3 5
  • ATP-Binding Cassette, Sub-Family A (ABC1), Member 17, Pseudogene 2 3
  • ABCA17 3

External Ids for ABCA17P Gene

Previous GeneCards Identifiers for ABCA17P Gene

  • GC16U900657
  • GC16P002377
  • GC16P002316

Summaries for ABCA17P Gene

GeneCards Summary for ABCA17P Gene

ABCA17P (ATP Binding Cassette Subfamily A Member 17, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ABCA17P Gene

Genomics for ABCA17P Gene

Regulatory Elements for ABCA17P Gene

Enhancers for ABCA17P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G002364 0.8 ENCODE 25.4 +26.5 26524 3.2 PKNOX1 FEZF1 BMI1 GATA2 ZNF366 FOS RELB IKZF2 ZNF398 NFIC ABCA17P ABCA3 CCNF NTN3 TBC1D24 SRRM2-AS1 GC16M002363 GC16M002369
GH16G002506 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.6 +169.6 169645 4.4 PKNOX1 RAD21 ZNF143 RELB IKZF2 EGR2 ZNF654 CBFB USF2 GATAD2B TBC1D24 PDPK1 CEMP1 ABCA17P ABCA3 CCNF SRRM2 ATP6V0C GC16M002495
GH16G002339 1.2 ENCODE 14.8 +1.1 1119 2.2 MLX CREB3L1 ZFP64 DMAP1 SLC30A9 ZNF143 SP3 NFYC ZNF610 RCOR2 IFT140 ZNF213-AS1 ERVK13-1 ENSG00000261123 ABCA17P ENSG00000260646 JPT2 ENSG00000260447 NME3 CCDC154
GH16G003174 1.5 Ensembl ENCODE dbSUPER 11.1 +836.3 836252 1.2 ATF1 CREB3L1 ARNT ARID4B SIN3A ZNF2 GTF3C2 GLIS2 FOS KLF7 THOC6 LOC105371055 CREBBP RNPS1 ZNF205 ZNF263 PDPK2P ABCA17P ZNF213-AS1 LOC652276
GH16G002372 0.8 ENCODE 19.7 +34.0 33977 1.6 CTCF CREB3L1 RB1 RBBP5 ZBTB40 ZNF2 RAD21 ZNF335 TCF12 EGR1 ABCA17P ABCA3 CCNF GC16M002369 GC16P002400
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ABCA17P on UCSC Golden Path with GeneCards custom track

Promoters for ABCA17P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000082470 1350 1001 MLX CREB3L1 ZFP64 DMAP1 SLC30A9 ZNF143 NFYC ZNF610 RCOR2 NBN

Genomic Location for ABCA17P Gene

Chromosome:
16
Start:
2,339,150 bp from pter
End:
2,426,699 bp from pter
Size:
87,550 bases
Orientation:
Plus strand

Genomic View for ABCA17P Gene

Genes around ABCA17P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ABCA17P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ABCA17P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ABCA17P Gene

Proteins for ABCA17P Gene

Post-translational modifications for ABCA17P Gene

No Post-translational modifications

No data available for DME Specific Peptides for ABCA17P Gene

Domains & Families for ABCA17P Gene

Gene Families for ABCA17P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ABCA17P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ABCA17P Gene

Function for ABCA17P Gene

Animal Model Products

  • Taconic Biosciences Mouse Models for ABCA17P

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ABCA17P Gene

Localization for ABCA17P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ABCA17P Gene

Pathways & Interactions for ABCA17P Gene

SuperPathways for ABCA17P Gene

No Data Available

Interacting Proteins for ABCA17P Gene

Gene Ontology (GO) - Biological Process for ABCA17P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ABCA17P Gene

Drugs & Compounds for ABCA17P Gene

No Compound Related Data Available

Transcripts for ABCA17P Gene

mRNA/cDNA for ABCA17P Gene

(6) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ABCA17P Gene

ATP-binding cassette, sub-family A (ABC1), member 17, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ABCA17P Gene

No ASD Table

Relevant External Links for ABCA17P Gene

GeneLoc Exon Structure for
ABCA17P
ECgene alternative splicing isoforms for
ABCA17P

Expression for ABCA17P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ABCA17P Gene

mRNA differential expression in normal tissues according to GTEx for ABCA17P Gene

This gene is overexpressed in Testis (x12.1).

NURSA nuclear receptor signaling pathways regulating expression of ABCA17P Gene:

ABCA17P

SOURCE GeneReport for Unigene cluster for ABCA17P Gene:

Hs.376281
genes like me logo Genes that share expression patterns with ABCA17P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ABCA17P Gene

Orthologs for ABCA17P Gene

Evolution for ABCA17P Gene

ENSEMBL:
Gene Tree for ABCA17P (if available)
TreeFam:
Gene Tree for ABCA17P (if available)

No data available for Orthologs for ABCA17P Gene

Paralogs for ABCA17P Gene

No data available for Paralogs for ABCA17P Gene

Variants for ABCA17P Gene

Sequence variations from dbSNP and Humsavar for ABCA17P Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs45451291 Likely benign 2,340,705(-) CACCC(A/T)CCCCT upstream-variant-2KB, utr-variant-5-prime
rs45456893 Likely benign 2,340,595(-) GCCGC(A/C)GCCGC upstream-variant-2KB, utr-variant-5-prime
rs45583636 Likely benign 2,340,745(-) CGGAG(C/G)GGCCG upstream-variant-2KB, utr-variant-5-prime
rs45501400 Uncertain significance 2,340,564(-) AGTGC(A/C)GCCGG intron-variant, upstream-variant-2KB
rs886051838 Uncertain significance 2,340,603(-) GCGCG(C/T)CGGCC upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for ABCA17P Gene

Variant ID Type Subtype PubMed ID
esv2422427 CNV duplication 17116639
esv2673708 CNV deletion 23128226
esv2750384 CNV deletion 23290073
esv3308719 CNV mobile element insertion 20981092
esv3348224 CNV insertion 20981092
nsv1052260 CNV gain 25217958
nsv1123003 CNV deletion 24896259
nsv1131103 CNV deletion 24896259
nsv457353 CNV loss 19166990
nsv571201 CNV loss 21841781
nsv827512 CNV gain 20364138
nsv833121 CNV loss 17160897
nsv952903 CNV deletion 24416366

Relevant External Links for ABCA17P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ABCA17P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ABCA17P Gene

Disorders for ABCA17P Gene

Relevant External Links for ABCA17P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ABCA17P

No disorders were found for ABCA17P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ABCA17P Gene

Publications for ABCA17P Gene

  1. The human ortholog of the rodent testis-specific ABC transporter Abca17 is a ubiquitously expressed pseudogene (ABCA17P) and shares a common 5' end with ABCA3. (PMID: 16968533) Piehler A.P. … Kaminski W.E. (BMC Mol. Biol. 2006) 2 3 64
  2. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. (PMID: 20210993) Zhang Z.D. … Gerstein M. (Genome Biol. 2010) 3 64
  3. The human ABC transporter pseudogene family: Evidence for transcription and gene-pseudogene interference. (PMID: 18405356) Piehler A.P. … Kaminski W.E. (BMC Genomics 2008) 3 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for ABCA17P Gene

Sources for ABCA17P Gene

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