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Aliases for ABCA17P Gene

Aliases for ABCA17P Gene

  • ATP-Binding Cassette, Sub-Family A (ABC1), Member 17, Pseudogene 2 3
  • ABCA17 3

External Ids for ABCA17P Gene

Previous GeneCards Identifiers for ABCA17P Gene

  • GC16U900657
  • GC16P002377
  • GC16P002316

Summaries for ABCA17P Gene

GeneCards Summary for ABCA17P Gene

ABCA17P (ATP-Binding Cassette, Sub-Family A (ABC1), Member 17, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ABCA17P Gene

Genomics for ABCA17P Gene

Regulatory Elements for ABCA17P Gene

Genomic Location for ABCA17P Gene

2,339,150 bp from pter
2,426,699 bp from pter
87,550 bases
Plus strand

Genomic View for ABCA17P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ABCA17P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ABCA17P Gene

Proteins for ABCA17P Gene

Post-translational modifications for ABCA17P Gene

No Post-translational modifications

No data available for DME Specific Peptides for ABCA17P Gene

Domains for ABCA17P Gene

Gene Families for ABCA17P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ABCA17P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ABCA17P Gene

Function for ABCA17P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ABCA17P Gene

Localization for ABCA17P Gene

Subcellular locations from

Jensen Localization Image for ABCA17P Gene COMPARTMENTS Subcellular localization image for ABCA17P gene
Compartment Confidence
plasma membrane 3
lysosome 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for ABCA17P Gene

Pathways for ABCA17P Gene

SuperPathways for ABCA17P Gene

No Data Available

Interacting Proteins for ABCA17P Gene

Gene Ontology (GO) - Biological Process for ABCA17P Gene


No data available for Pathways by source for ABCA17P Gene

Transcripts for ABCA17P Gene

mRNA/cDNA for ABCA17P Gene

(6) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ABCA17P Gene

ATP-binding cassette, sub-family A (ABC1), member 17, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ABCA17P Gene

No ASD Table

Relevant External Links for ABCA17P Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ABCA17P Gene

mRNA expression in normal human tissues for ABCA17P Gene

mRNA differential expression in normal tissues according to GTEx for ABCA17P Gene

This gene is overexpressed in Testis (12.1).

SOURCE GeneReport for Unigene cluster for ABCA17P Gene Hs.376281

genes like me logo Genes that share expressions with ABCA17P: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for ABCA17P Gene

Orthologs for ABCA17P Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for ABCA17P Gene

Organism Taxonomy Gene Similarity Type Details
(Mus musculus)
Mammalia Abca17 16
Species with no ortholog for ABCA17P:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ABCA17P Gene

Gene Tree for ABCA17P (if available)
Gene Tree for ABCA17P (if available)

Paralogs for ABCA17P Gene

No data available for Paralogs for ABCA17P Gene

Variants for ABCA17P Gene

Sequence variations from dbSNP and Humsavar for ABCA17P Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs1545979 -- 2,345,869(-) agtga(C/G)ccgag intron-variant
rs1994471 -- 2,344,207(-) AAAAA(A/C)AAAAA intron-variant
rs2035650 -- 2,345,050(-) GAAGC(G/T)TATTT intron-variant
rs2056410 -- 2,344,257(-) attgc(A/G)ccatt intron-variant
rs2171496 -- 2,344,348(-) atggc(A/G)gcgca intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ABCA17P Gene

Variant ID Type Subtype PubMed ID
esv2422427 CNV Duplication 17116639
dgv2545n71 CNV Loss 21882294
nsv905139 CNV Loss 21882294
nsv457353 CNV Loss 19166990
nsv827512 CNV Gain 20364138
esv2673708 CNV Deletion 23128226
esv2750384 CNV Deletion 23290073
nsv833121 CNV Loss 17160897
esv272992 CNV Insertion 20981092
dgv2569n71 CNV Loss 21882294
dgv2570n71 CNV Loss 21882294
nsv905149 CNV Loss 21882294

Relevant External Links for ABCA17P Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ABCA17P Gene

Disorders for ABCA17P Gene

(1) University of Copenhagen DISEASES for ABCA17P Gene

genes like me logo Genes that share disorders with ABCA17P: view

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , Novoseek inferred disease relationships , Genatlas and External Links for ABCA17P Gene

Publications for ABCA17P Gene

  1. The human ortholog of the rodent testis-specific ABC transporter Abca17 is a ubiquitously expressed pseudogene (ABCA17P) and shares a common 5' end with ABCA3. (PMID: 16968533) Piehler A.P. … Kaminski W.E. (BMC Mol. Biol. 2006) 2 3
  2. The human ABC transporter pseudogene family: Evidence for transcription and gene-pseudogene interference. (PMID: 18405356) Piehler A.P. … Kaminski W.E. (BMC Genomics 2008) 3
  3. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. (PMID: 20210993) Zhang Z.D. … Gerstein M. (Genome Biol. 2010) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for ABCA17P Gene

Sources for ABCA17P Gene

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