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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ABCA12 Gene

protein-coding   GIFtS: 55
GCID: GC02M215796

ATP-binding cassette, sub-family A (ABC1), member 12

(Previous names: ichthyosis congenita II, lamellar ichthyosis B )
(Previous symbol: ICR2B)
 Explore 17 diseases affiliated with
ABCA12 via our new
 Human Malady Compendium 
Biological research products
for ABCA12
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
ATP-Binding Cassette, Sub-Family A (ABC1), Member 121 2     ARCI4B2
ICR2B1 2 5     ATP-Binding Cassette Sub-Family A Member 122
LI21 2 5     ABC123
ATP-Binding Cassette Transporter 122 3     ATP-Binding Cassette 123
DKFZP434G2321     EC 3.6.38
Ichthyosis Congenita II, Lamellar Ichthyosis B1     EC 3.6.3.258
ARCI4A2     

External Ids:    HGNC: 146371   Entrez Gene: 261542   Ensembl: ENSG000001444527   OMIM: 6078005   UniProtKB: Q86UK03   

Export aliases for ABCA12 gene to outside databases

Previous GC identifers: GC02M213960 GC02M214520 GC02M215760 GC02M215998 GC02M215621 GC02M215504 GC02M207652


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for ABCA12:
The membrane-associated protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC)
transporters. ABC proteins transport various molecules across extra- and intracellular membranes. ABC genes are
divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, and White). This encoded protein is a
member of the ABC1 subfamily, which is the only major ABC subfamily found exclusively in multicellular eukaryotes.
Alternative splicing of this gene results in multiple transcript variants. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: ABCAC_HUMAN, Q86UK0
Function: Probable transporter involved in lipid homeostasis

Gene Wiki entry for ABCA12


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000002.11  NC_018913.1  NT_005403.17  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ABCA12 gene promoter:
         c-Fos   Nkx3-1   Nkx3-1 v4   AP-1   Nkx3-1 v1   E4BP4   GATA-1   Nkx3-1 v2   Nkx3-1 v3   c-Jun   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidABCA12 promoter sequence
   Search SABiosciences Chromatin IP Primers for ABCA12

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ABCA12


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2q34   Ensembl cytogenetic band:  2q35   HGNC cytogenetic band: 2q34

ABCA12 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ABCA12 gene location

GeneLoc information about chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02M215796:  view genomic region     (about GC identifiers)

Start:
215,796,266 bp from pter      End:
216,003,151 bp from pter
Size:
206,886 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: ABCAC_HUMAN, Q86UK0 (See protein sequence)
Recommended Name: ATP-binding cassette sub-family A member 12  
Size: 2595 amino acids; 293237 Da
Subcellular location: Membrane; Multi-pass membrane protein (Potential)
Sequence caution: Sequence=AAN40735.1; Type=Erroneous initiation;
Secondary accessions: Q53QE2 Q53S55 Q8IZW6 Q96JT3 Q9Y4M5
Alternative splicing: 2 isoforms:  Q86UK0-1   Q86UK0-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for ABCA12: NX_Q86UK0

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q86UK0

  • 3 DME Specific Peptides for ABCA12 (Q86UK0)
     NGAGKTT  GPNGAGKT  LLGPNGAGK 

    ABCA12 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (2 alternative transcripts): 
    NP_056472.2  NP_775099.2  

    ENSEMBL proteins: 
     ENSP00000272895   ENSP00000374312   ENSP00000400231  
    Reactome Protein details: Q86UK0
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    Uscn Proteins for ABCA12

    Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005743mitochondrial inner membrane IEA--
    GO:0005829cytosol IEA--
    GO:0016021integral to membrane NAS12697999


    ABCA12 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ABCA12 for domains           About GeneDecksing

    4 InterPro domains/families:
     IPR003439 ABC_transporter-like
     IPR003593 AAA+_ATPase
     IPR026082 ABC_A
     IPR017871 ABC_transporter_CS

    Graphical View of Domain Structure for InterPro Entry Q86UK0

    ProtoNet protein and cluster: Q86UK0

    UniProtKB/Swiss-Prot: ABCAC_HUMAN, Q86UK0
    Domain: Multifunctional polypeptide with two homologous halves, each containing a hydrophobic membrane-anchoring domain
    and an ATP binding cassette (ABC) domain (By similarity)
    Similarity: Belongs to the ABC transporter superfamily. ABCA family
    Similarity: Contains 2 ABC transporter domains


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: ABCAC_HUMAN, Q86UK0
    Function: Probable transporter involved in lipid homeostasis

    Enzyme Numbers (IUBMB): EC 3.6.32 EC 3.6.3.252

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    hsa-miR-362-3p hsa-miR-409-3p hsa-miR-27a hsa-miR-128 hsa-miR-3681* hsa-miR-3647-3p hsa-miR-1279 hsa-miR-329
    SwitchGear 3'UTR luciferase reporter plasmidABCA12 3' UTR sequence
    Inhib. RNA
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ABCA12

    Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005524ATP binding NAS12697999
    GO:0016887ATPase activity IEA--


    ABCA12 for ontologies           About GeneDecksing


    Animal Models:
         Mouse knock-outs for ABCA12: Abca12tm1Shzu Abca12tm1Lex
         9 MGI mutant phenotypes (inferred from 3 alleles(MGI details for Abca12):
     behavior/neurological  cardiovascular system  cellular  craniofacial  growth/size 
     homeostasis/metabolism  integument  mortality/aging  respiratory system 

    ABCA12 for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1ABC-family proteins mediated transport
    ABC-family proteins mediated transport1.00
    ABCA transporters in lipid homeostasis0.47
    ABC transporters0.70
    2SLC-mediated transmembrane transport
    Transmembrane transport of small molecules0.50

    Pathway sources
    See GeneCards unified pathways
    Show all pathways


    3        Reactome Pathways for ABCA12
        ABC-family proteins mediated transport
    ABCA transporters in lipid homeostasis
    Transmembrane transport of small molecules


    1         Kegg Pathway  (Kegg details for ABCA12):
        ABC transporters


    ABCA12 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for ABCA12

    Gene Ontology (GO): 5/8 biological process terms (GO ID links to tree view) (see all 8):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006869lipid transport NAS12915478
    GO:0019725cellular homeostasis NAS12697999
    GO:0031424keratinization IEA--
    GO:0035627ceramide transport IEA--
    GO:0043129surfactant homeostasis IEA--


    ABCA12 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    ABCA12 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ABCA12
    1 Novoseek chemical compound relationship for ABCA12 gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    lipid 50.1 25 16847209 (2), 16007249 (2), 18341575 (2), 20166009 (1) (see all 9)

    Search CenterWatch for drugs/clinical trials and news about ABCA12 / ABCAC 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ABCA12 gene (2 alternative transcripts): 
    NM_015657.3  NM_173076.2  

    Unigene Cluster for ABCA12:

    ATP-binding cassette, sub-family A (ABC1), member 12
    Hs.134585  [show with all ESTs]
    Unigene Representative Sequence: NM_173076
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000272895(uc002vev.3 uc002vew.3 uc010zjn.2) ENST00000389661
    ENST00000412081

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    8/11 QIAGEN miScript miRNA Assays for microRNAs that regulate ABCA12 (see all 11):
    hsa-miR-362-3p hsa-miR-409-3p hsa-miR-27a hsa-miR-128 hsa-miR-3681* hsa-miR-3647-3p hsa-miR-1279 hsa-miR-329
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    Inhib. RNA
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    Additional cDNA sequence: 

    AF418105.1 AK096597.1 AK123578.1 AL080207.1 AY033486.1 AY219711.1 BC144073.1 

    4 DOTS entries:

    DT.40283835  DT.102842413  DT.100661918  DT.40236619 

    20 AceView cDNA sequences:

    AK096597 AF418105 NM_015657 CR609974 AY033486 NM_173076 AY219711 CN479111 
    BM745367 BX376131 CD627181 AI081199 AK123578 AA487007 AL080207 CB243323 
    CD627183 CF887579 CD627187 CD627179 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ABCA12 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: ACTGTTTGTC

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See ABCA12 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ABCA12

    SOURCE GeneReport for Unigene cluster: Hs.134585

    UniProtKB/Swiss-Prot: ABCAC_HUMAN, Q86UK0
    Tissue specificity: Mainly expressed in the stomach, placenta, testis and fetal brain

        SABiosciences Expression via Pathway-Focused PCR Array including ABCA12: 
              Drug Transporters in human mouse rat

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    In Situ
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ABCA12

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the last universal common ancestor (LUCA).

    Orthologs for ABCA12 gene from 7/23 species (see all 23)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves ABCA121 ATP-binding cassette, sub-family A (ABC1), member 12 67.16(n)
    62.05(a)
      424011  XM_421867.3  XP_421867.3 
    lizard
    (Anolis carolinensis)
    Reptilia ABCA126
    --
    56(a)
    1 ↔ 1
    1(116555398-116742807)
    zebrafish
    (Danio rerio)
    Actinopterygii abca121 ATP-binding cassette, sub-family A (ABC1), member 12 55.76(n)
    49.28(a)
      558335  XM_681540.5  XP_686632.5 
    fruit fly
    (Drosophila melanogaster)
    Insecta BG:DS00797.53 ATP-binding cassette (ABC) transporter 28(a)   34D1   --
    worm
    (Caenorhabditis elegans)
    Secernentea abt-56
    ABC Transporter family member (abt-5)
    17(a)
    1 → many
    I(12011267-12018659)
    rice
    (Oryza sativa)
    Liliopsida Os.87722 Oryza sativa (japonica cultivar-group) cDNA cloneJ more 75.69(n)    AK101910.1 
    E. coli
    (Escherichia coli)
    Gamma proteobacteria yadG6
    predicted transporter subunit: ATP-binding compone...
    26(a)
    possible ortholog
    Chromosome(142779-143705)


    ENSEMBL Gene Tree for ABCA12 (if available)
    TreeFam Gene Tree for ABCA12 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ABCA12 gene
    ABCG12  ABCA12  ABCA102  ABCA132  ABCA32  ABCA82  ABCG42  ABCG82  
    ABCA42  ABCA72  ABCG52  ABCA22  ABCA92  ABCA62  ABCA52  ABCG22  
    11 SIMAP similar genes for ABCA12 using alignment to 2 protein entries:     ABCAC_HUMAN (see all proteins):
    DKFZp547P193    ABC2    ABCA7    ABCA2    DKFZp434E1030    ABC1
    ABCA4    ABCA1    ABCG2    ABCA3    DKFZp686K07118

    ABCA12 for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for ABCA12
    PGOHUM00000246576


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/3707 NCBI SNPs in ABCA12 are shown (see all 3707    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 2 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs7260701,2
    C,F,H,pathogenic207669513(-) AAAAGG/AATATT 4 /N /D mis1 ese318Minor allele frequency- A:0.02NS EA NA EU 7785
    rs730884431,2
    C,--207652134(+) AAGCCG/AGGCAG 2 -- ds50011Minor allele frequency- A:0.50WA 2
    rs730884461,2
    C,F,--207652659(+) TCTTCA/GTATTC 2 -- ut314Minor allele frequency- G:0.15WA CSA 124
    rs777296451,2
    C,F,--207653055(+) CCCTTA/GGCAGT 2 -- ut311Minor allele frequency- G:0.08WA 118
    rs1121447491,2
    F--207653684(+) GCCTGC/GTAAGC 2 -- int12Minor allele frequency- G:0.40CSA 5
    rs714283551,2
    C,F,--207653752(+) CAAGCG/ATGTAT 2 -- int12Minor allele frequency- A:0.50NA 4
    rs757591971,2
    F,--207654291(+) CTAAAG/TCCCCC 2 -- int11Minor allele frequency- T:0.05WA 118
    rs133917101,2
    H--207654397(+) ACAGAT/AATAAT 2 -- int14Minor allele frequency- A:0.00NS EA 410
    rs38861191,2
    C,F,A,H,--207654413(-) ACATAT/CAGAAA 2 -- int110Minor allele frequency- C:0.05NS EA NA 1020
    rs1112666071,2
    C,--207654531(+) TGAACG/AGAAAG 2 -- int11Minor allele frequency- A:0.50WA 2

    HapMap Linkage Disequilibrium report for ABCA12 (215796266 - 216003151 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for ABCA12: --
    Human Gene Mutation Database (HGMD): ABCA12

    Locus Specific Mutation Databases (LSDB): ABCA12

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ABCA12
    DNA2.0 Custom Variant and Variant Library Synthesis for ABCA12

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    ABCA12 for disorders           About GeneDecksing

    OMIM gene information: 607800   
    OMIM disorders: 601277  242500  
    UniProtKB/Swiss-Prot: ABCAC_HUMAN, Q86UK0
  • Note=ABCA12 mutations are a cause of different subtypes of autosomal recessive congenital ichthyosis (ARCI),
  • including Harlequin ichthyosis (HI), lamellar ichthyosis (LI) and non-bullous congenital ichthyosiform erythroderma
    (NCIE). HI shows the most severe phenotype. NCIE and LI are clinically characterized by fine, whitish scales on a
    background of erythematous skin, and large, thick, dark scales over the entire body without serious background
    erythroderma, respectively
  • Defects in ABCA12 are the cause of ichthyosis harlequin (HI) [MIM:242500]. A very severe skin disorder in
  • which the neonate is born with a thick covering of armor-like scales. The skin dries out to form hard diamond-shaped
    plaques separated by fissures, resembling 'armor plating'. The normal facial features are severely affected, with
    distortion of the lips (eclabion), eyelids (ectropion), ears, and nostrils. Affected babies are often born prematurely
    and rarely survive the perinatal period
  • Defects in ABCA12 are the cause of ichthyosis lamellar type 2 (LI2) [MIM:601277]. A non-bullous ichthyosis, a
  • skin disorder characterized by abnormal cornification of the epidermis. It is one the most severe forms of ichthyoses
    apparent at birth and persisting throughout life. LI patients are born encased in a tight, shiny, translucent covering
    called collodion membrane. Over the first weeks of life, the collodion membrane is gradually replaced by generalized
    large, dark brown, plate-like scales with minimal to no erythroderma. Tautness of facial skin commonly results in
    ectropion, eclabium and scarring alopecia of the scalp. Common complications are severe heat intolerance and recurrent
    ear infections
  • Defects in ABCA12 are a cause of erythroderma, ichthyosiform, congenital non-bullous (NCIE) [MIM:242100]. A
  • non-bullous ichthyosis, a skin disorder characterized by abnormal cornification of the epidermis. Most affected
    individuals are born with a tight, shiny, translucent covering called collodion membrane. The collodion membrane
    subsequently evolves into generalized scaling and intense redness of the skin. Clinical features are milder than in
    lamellar ichthyoses and demonstrate a greater variability in the intensity of erythema, size and type of scales. In
    contrast to lamellar ichthyoses, scales are usually white, fine and powdery, and palms and soles are severely
    affected. Patients suffer from palmoplantar keratoderma, often with painful fissures, digital contractures, and loss
    of pulp volume

    17 diseases for ABCA12:    About MalaCards
    ichthyosis    ichthyosis lamellar 2    congenital ichthyosiform erythroderma    autosomal recessive congenital ichthyosis
    ichthyosis vulgaris    ectropion    tangier disease    skin disease
    alopecia    alzheimer's disease    pharyngitis    pancreatic cancer
    pancreatitis    pneumonia    tuberculosis    neuronitis
    mycobacterium tuberculosis

    2 diseases from the University of Copenhagen DISEASES database for ABCA12:
    Congenital ichthyosiform erythroderma     Ectropion

    3 Novoseek disease relationships for ABCA12 gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    harlequin ichthyosis 98.6 11 16847209 (1), 19664001 (1), 16675967 (1), 19429679 (1) (see all 10)
    ichthyosis 78.2 1 18341575 (1)
    skin diseases 58.3 4 19429679 (1), 17611579 (1), 15756637 (1), 16902423 (1)

    GeneTests: ABCA12
    Autosomal Recessive Congenital Ichthyosis

    Genetic Association Database (GAD): ABCA12
    Human Genome Epidemiology (HuGE) Navigator: ABCA12 (3 documents)

    Export disorders for ABCA12 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ABCA12 gene, integrated from 9 sources (see all 44):
    (articles sorted by number of sources associating them with ABCA12)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Mutations in the transporter ABCA12 are associated with lamellar ichthyosis type 2. (PubMed id 12915478)1, 2, 3, 9 Lefevre C....Fischer J. (2003)
    2. Identification and characterization of a novel ABCA subfamily member, ABCA12, located in the lamellar ichthyosis region on 2q34. (PubMed id 12697999)1, 2, 9 Annilo T.... Rosier M. (2002)
    3. ABCA12 is the major harlequin ichthyosis gene. (PubMed id 16902423)1, 2, 9 Thomas A.C....Kelsell D.P. (2006)
    4. Mutations in ABCA12 underlie the severe congenital skin disease harlequin ichthyosis. (PubMed id 15756637)1, 2, 9 Kelsell D.P....O'Toole E.A. (2005)
    5. Non-bullous congenital ichthyosiform erythroderma associated with homozygosity for a novel missense mutation in an ATP binding domain of ABCA12. (PubMed id 22257947)1, 2 Nawaz S.... Klar J. (2012)
    6. ABCA12 mutations and autosomal recessive congenital i chthyosis: a review of genotype/phenotype correlations and of pathogenetic conc epts. (PubMed id 20672373)1, 2 Akiyama M. (2010)
    7. ABCA12 is a major causative gene for non-bullous cong enital ichthyosiform erythroderma. (PubMed id 19262603)1, 2 Sakai K....Shimizu H. (2009)
    8. Novel ABCA12 mutations identified in two cases of non-bullous congenital ichthyosiform erythroderma associated with multiple skin malignant neoplasia. (PubMed id 17508018)1, 2 Natsuga K....Shimizu H. (2007)
    9. No genetic association between ATP binding cassette proteins and Japanese sporadic Alzheimer's disease. (PubMed id 15980630)1, 4 Ohkubo T....Arai H. (2005)
    10. The human ATP-binding cassette (ABC) transporter supe rfamily. (PubMed id 11435397)1, 3 Dean M....Allikmets R. (2001)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 26154 HGNC: 14637 AceView: ABCA12 Ensembl:ENSG00000144452 euGenes: HUgn26154
    ECgene: ABCA12 Kegg: 26154 H-InvDB: ABCA12

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ABCA12 Pharmacogenomics, SNPs, Pathways
    GeneReviewshttp://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/ABCA12
    ABCMdbhttp://abcmutations.hegelab.org/proteinDetails?uniprot_id=Q86UK0

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ABCA12 gene:
    Search GeneIP for patents involving ABCA12

    GeneCards and IP:
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