ABCA11P Gene
pseudogene GIFtS: 31
GCID: GC04M000420
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ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene
(Previous symbol: ABCA11)
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Aliases
for ABCA11P gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA
Quality score for the ORGUL clustered with this gene is 4
| Aliases |
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| ATP-Binding Cassette, Sub-Family A (ABC1), Member 11, Pseudogene1 2 | | ABCA111 2 3 | | EST11335301 2 | | FLJ142971 |
| External Ids: | HGNC: 311 | Entrez Gene: 799632 | Ensembl: ENSG000002515957 | UniProtKB: Q4W5N13 |
Export aliases for ABCA11P gene to outside databasesPrevious GC identifers: GC04U900972 GC04M000412
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Summaries
for ABCA11P gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
fRNAdb sequence ontology for ABCA11P:
ncRNA - An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.
View fRNAdb secondary structures for ABCA11P |
Genomic Views
for ABCA11P gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000004.11 NC_018915.1 NT_037622.5
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the ABCA11P gene promoter:
Ik-1
Other transcription factors
Search SABiosciences Chromatin IP Primers for ABCA11P
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ABCA11P |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 4p16.3 Ensembl cytogenetic band: 4p16.3 HGNC cytogenetic band: 4p16.3ABCA11P Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 4 GeneLoc Exon Structure GeneLoc location for GC04M000420: view genomic region
(about GC identifiers)
Start:
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419,224 bp from pter |
End:
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467,998 bp from pter |
Size:
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48,775 bases |
Orientation:
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minus strand |
ORGUL member locations:
Legend (see complete legend)
- n405504
- n335509
- FR0285599
- n333527
419223 443611 467998 chr4
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Proteins
for ABCA11P gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
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UniProtKB/Swiss-Prot: ABCAB_HUMAN, Q4W5N1 (See
protein sequence)Recommended Name: Putative ATP-binding cassette sub-family A member 11 Size: 156 amino acids; 17479 Da
Caution: In contrast to other members of the family, it is much shorter and lacks ABC transporter domains. Defined as apseudogene by HGNC. However, proteomic data on a specific peptide from PubMed:17924679 suggest the existence of thisprotein
Secondary accessions: Q9H7T1Explore the universe of human proteins at neXtProt for ABCA11P: NX_Q4W5N1
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q4W5N1
ABCA11P Protein expression data from MOPED and PaxDb: --
Human Recombinant Protein Products:
ABCA11P Antibody Products:
Assay Products for ABCA11P: |
Protein
Domains /
Families
for ABCA11P gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
ABCA11P for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry Q4W5N1ProtoNet protein and cluster: Q4W5N1 UniProtKB/Swiss-Prot: ABCAB_HUMAN, Q4W5N1Similarity: Belongs to the ABC transporter superfamily. ABCA family |
Function
for ABCA11P gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ABCA11P |
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Pathways & Interactions
for ABCA11P gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
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Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ABCA11P
|
Drugs & Compounds
for ABCA11P gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for ABCA11P
Search CenterWatch for drugs/clinical trials and news about ABCA11P 
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Transcripts
for ABCA11P gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
| 1 fRNAdb Secondary structure:
REFSEQ mRNAs for ABCA11P gene: NM_024903.1 Unigene Cluster for ABCA11P: ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene Hs.428360 [show with all ESTs]Unigene Representative Sequence: NM_1334744 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000451020(uc003gac.2 uc003gad.2) ENST00000504019 ENST00000514396
ENST00000507854(uc010ibd.2)
Primer
Products: |  | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ABCA11P
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat ABCA11P | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ABCA11P | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ABCA11P |
Additional cDNA sequence: AB075862.1 AK024359.1 AK092362.1 AK095558.1 AK095689.1 AK127067.1 AK128499.1 AK303674.1 AL834155.1 BC040413.1 BC060316.1 BC065035.1 BC098116.1 BC098259.1 BC098291.1 BC099730.1 BC105084.1 BC112069.1 BC143677.1 NR_002451.2 24/26 DOTS entries (see all 26): DT.411536 DT.411539 DT.99963003 DT.100022745 DT.121227576 DT.121227695 DT.91815210 DT.100777106 DT.100777109 DT.121227760 DT.100029317 DT.121227765 DT.121227442 DT.100029320 DT.100777107 DT.91793452 DT.91985931 DT.100020145 DT.100664887 DT.100775750 DT.100777104 DT.40210097 DT.411538 DT.414041 24/107 AceView cDNA sequences (see all 107): AW513477 BC040413 AI366031 AA825833 BC060316 T74151 BU146970 AI654478 AA984609 F10161 NM_024903 AI202316 BU952399 AK024359 BF844274 AI138991 BM476083 BU950945 BU156411 CK300580 BU620973 AK127067 BE218003 AA460266
GeneLoc Exon Structure
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Expression
for ABCA11P gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| ABCA11P expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: AAAGAGAAGA
About this image
Genevestigator expression for ABCA11P
SOURCE GeneReport for Unigene cluster: Hs.428360
SABiosciences Custom PCR Arrays for ABCA11P
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ABCA11P
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat ABCA11P | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ABCA11P | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ABCA11P | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ABCA11P |
Orthologs
for ABCA11P gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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ENSEMBL Gene Tree for ABCA11P (if available)
TreeFam Gene Tree for ABCA11P (if available) |
Paralogs
for ABCA11P gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for ABCA11P gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
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Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for ABCA11P
1 CNV: 2066 | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for ABCA11P gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
 ABCA11P for disorders About MalaCards
ABCA11P for disorders About GeneDecksing
OMIM gene information: 601519 603663 605480 609456
Export disorders for ABCA11P gene to outside databases
|
Publications
for ABCA11P gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for ABCA11P gene integrated from 9 sources:
(articles sorted by number of sources associating them with ABCA11P) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
- Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)2 Hillier L.W....Wilson R.K. (2005)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
- (PubMed id 15103394)10
- (PubMed id 18089548)10
- (PubMed id 15608161)10
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External Searches for ABCA11P gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
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Genome Databases showing ABCA11P gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing ABCA11P gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ABCA11P gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for ABCA11P | Pharmacogenomics, SNPs, Pathways |
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About This Section
| Patent Information for ABCA11P gene:
Search GeneIP for patents involving ABCA11P
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for ABCA11P gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat ABCA11P | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ABCA11P | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ABCA11P | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ABCA11P | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ABCA11P | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ABCA11P |
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| | | | Search Tocris compounds for ABCA11P |
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 | | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ABCA11P |
|  |  |  | | | | Search ThermoFisher Antibodies for ABCA11P |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat ABCA11P |
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GeneCards Homepage -
Last full update: 18 Mar 2013 -
Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013
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