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Aliases for ABCA11P Gene

Aliases for ABCA11P Gene

  • ATP-Binding Cassette, Sub-Family A (ABC1), Member 11, Pseudogene 2 3
  • ABCA11 3 4
  • ATP-Binding Cassette, Sub-Family A (ABC1), Member 11 (Pseudogene) 3
  • EST1133530 3

External Ids for ABCA11P Gene

Previous HGNC Symbols for ABCA11P Gene

  • ABCA11

Previous GeneCards Identifiers for ABCA11P Gene

  • GC04U900972
  • GC04M000412
  • GC04M000420
  • GC04M000426

Summaries for ABCA11P Gene

GeneCards Summary for ABCA11P Gene

ABCA11P (ATP-Binding Cassette, Sub-Family A (ABC1), Member 11, Pseudogene) is a Pseudogene. GO annotations related to this gene include ATPase activity.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ABCA11P Gene

Genomics for ABCA11P Gene

Regulatory Elements for ABCA11P Gene

Transcription factor binding sites by QIAGEN in the ABCA11P gene promoter:

Genomic Location for ABCA11P Gene

Start:
425,435 bp from pter
End:
474,209 bp from pter
Size:
48,775 bases
Orientation:
Minus strand

Genomic View for ABCA11P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ABCA11P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ABCA11P Gene

Proteins for ABCA11P Gene

  • Protein details for ABCA11P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q4W5N1-ABCAB_HUMAN
    Recommended name:
    Putative ATP-binding cassette sub-family A member 11
    Protein Accession:
    Q4W5N1
    Secondary Accessions:
    • Q9H7T1

    Protein attributes for ABCA11P Gene

    Size:
    156 amino acids
    Molecular mass:
    17479 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ABCA11P Gene

Proteomics data for ABCA11P Gene at MOPED

Post-translational modifications for ABCA11P Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ABCA11P Gene

Domains for ABCA11P Gene

Gene Families for ABCA11P Gene

HGNC:
  • ABCA :ATP binding cassette transporters / subfamily A

Protein Domains for ABCA11P Gene

Suggested Antigen Peptide Sequences for ABCA11P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q4W5N1

UniProtKB/Swiss-Prot:

ABCAB_HUMAN :
  • Q4W5N1
Family:
  • Belongs to the ABC transporter superfamily. ABCA family.
genes like me logo Genes that share domains with ABCA11P: view

Function for ABCA11P Gene

Gene Ontology (GO) - Molecular Function for ABCA11P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005215 transporter activity IEA --
GO:0005524 ATP binding IEA --
GO:0016887 ATPase activity IEA --
genes like me logo Genes that share ontologies with ABCA11P: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ABCA11P Gene

Localization for ABCA11P Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ABCA11P Gene COMPARTMENTS Subcellular localization image for ABCA11P gene
Compartment Confidence
nucleus 4
cytosol 2

Gene Ontology (GO) - Cellular Components for ABCA11P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with ABCA11P: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for ABCA11P Gene

Pathways for ABCA11P Gene

SuperPathways for ABCA11P Gene

No Data Available

Interacting Proteins for ABCA11P Gene

Gene Ontology (GO) - Biological Process for ABCA11P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport IEA --
GO:0008152 metabolic process IEA --
genes like me logo Genes that share ontologies with ABCA11P: view

No data available for Pathways by source for ABCA11P Gene

Transcripts for ABCA11P Gene

mRNA/cDNA for ABCA11P Gene

Unigene Clusters for ABCA11P Gene

ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ABCA11P

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ABCA11P Gene

No ASD Table

Relevant External Links for ABCA11P Gene

GeneLoc Exon Structure for
ABCA11P
ECgene alternative splicing isoforms for
ABCA11P

Expression for ABCA11P Gene

mRNA expression in normal human tissues for ABCA11P Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for ABCA11P Gene

SOURCE GeneReport for Unigene cluster for ABCA11P Gene Hs.745030

genes like me logo Genes that share expressions with ABCA11P: view

Expression partners for ABCA11P Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ABCA11P Gene

Orthologs for ABCA11P Gene

Evolution for ABCA11P Gene

ENSEMBL:
Gene Tree for ABCA11P (if available)
TreeFam:
Gene Tree for ABCA11P (if available)

No data available for Orthologs for ABCA11P Gene

Paralogs for ABCA11P Gene

Selected SIMAP similar genes for ABCA11P Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ABCA11P: view

No data available for Paralogs for ABCA11P Gene

Variants for ABCA11P Gene

Sequence variations from dbSNP and Humsavar for ABCA11P Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs894534 -- 435,931(-) TCAGC(A/G)TCTCA intron-variant
rs957625 -- 434,423(+) CATCC(A/T)GGGTG intron-variant
rs960015 -- 434,522(+) ACCTT(C/G)CCTCT intron-variant
rs1053400 -- 427,045(-) AATGA(A/G)GTCAA intron-variant
rs1053401 -- 426,875(-) AGAGC(A/C)TGAAG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for ABCA11P Gene

Variant ID Type Subtype PubMed ID
esv4769 CNV Complex 18987735
nsv469736 CNV Loss 16826518
nsv461144 CNV Loss 19166990
nsv521895 CNV Loss 19592680
nsv461145 CNV Gain 19166990
nsv517948 CNV Loss 19592680

Relevant External Links for ABCA11P Gene

HapMap Linkage Disequilibrium report
ABCA11P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ABCA11P Gene

Disorders for ABCA11P Gene

No disorders were found for ABCA11P Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for ABCA11P Gene

Publications for ABCA11P Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 4
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for ABCA11P Gene

Sources for ABCA11P Gene

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