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Aliases for ABALON Gene

Subcategory (RNA class) for ABALON Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ABALON Gene

  • Apoptotic BCL2L1-Antisense Long Non-Coding RNA 2 3 5
  • Apoptotic BCL-X-Associated Long NcRNA 2 3
  • Intronic BCL-XS-Inducing LncRNA 2 3
  • INXS 3

External Ids for ABALON Gene

Previous GeneCards Identifiers for ABALON Gene

  • GC20U900831

Summaries for ABALON Gene

GeneCards Summary for ABALON Gene

ABALON (Apoptotic BCL2L1-Antisense Long Non-Coding RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ABALON Gene

Genomics for ABALON Gene

Regulatory Elements for ABALON Gene

Enhancers for ABALON Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F031709 1.8 FANTOM5 Ensembl ENCODE 0.8 -4.3 -4319 14.7 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC TBX21 MYLK2 COX4I2 DEFB121 RNU1-94P DEFB122 DEFB123 DEFB118 REM1 LOC105372589 ID1
GH20F031702 1.7 FANTOM5 Ensembl ENCODE 0.3 -15.3 -15301 6.8 PKNOX1 ARNT MLX ZFP64 ARID4B SIN3A DMAP1 SLC30A9 CBX5 ZNF143 COX4I2 TPX2 ID1 TSPY26P HM13 ABALON LOC105372589
GH20F031672 2.3 VISTA FANTOM5 Ensembl ENCODE 0.2 -44.1 -44052 10.7 HDGF PKNOX1 ARNT CREB3L1 MLX WRNIP1 ZFP64 SIN3A ARID4B FEZF1 POFUT1 COX4I2 REM1 BCL2L1 LINC00028 DEFB124 ID1 HM13 TTLL9 HCK
GH20F031693 1.4 Ensembl ENCODE 0.3 -23.7 -23743 9.2 HDGF PKNOX1 ARNT MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 YY1 COX4I2 BCL2L1 ID1 HM13 DEFB121 ABALON LOC105372589
GH20F031683 1 Ensembl ENCODE 0.3 -35.2 -35188 4.7 PKNOX1 ZNF146 TBL1XR1 BHLHE40 ZNF133 NR3C1 EBF1 ZNF48 SSRP1 GATA2 COX4I2 BCL2L1 TPX2 RNU6-384P HM13-AS1 MYLK2 LOC105372589 ABALON
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ABALON on UCSC Golden Path with GeneCards custom track

Promoters for ABALON Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000399664 493 4800 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MEF2D SSRP1

Genomic Location for ABALON Gene

Chromosome:
20
Start:
31,721,507 bp from pter
End:
31,723,409 bp from pter
Size:
1,903 bases
Orientation:
Plus strand

Genomic View for ABALON Gene

Genes around ABALON on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ABALON Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ABALON Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ABALON Gene

Proteins for ABALON Gene

Post-translational modifications for ABALON Gene

No Post-translational modifications

No data available for DME Specific Peptides for ABALON Gene

Domains & Families for ABALON Gene

Gene Families for ABALON Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ABALON: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ABALON Gene

Function for ABALON Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ABALON Gene

Localization for ABALON Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ABALON gene
Compartment Confidence
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for ABALON Gene

Pathways & Interactions for ABALON Gene

SuperPathways for ABALON Gene

No Data Available

Interacting Proteins for ABALON Gene

Gene Ontology (GO) - Biological Process for ABALON Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ABALON Gene

Transcripts for ABALON Gene

mRNA/cDNA for ABALON Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ABALON Gene

No ASD Table

Relevant External Links for ABALON Gene

GeneLoc Exon Structure for
ABALON
ECgene alternative splicing isoforms for
ABALON

Expression for ABALON Gene

NURSA nuclear receptor signaling pathways regulating expression of ABALON Gene:

ABALON
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ABALON Gene

Orthologs for ABALON Gene

Evolution for ABALON Gene

ENSEMBL:
Gene Tree for ABALON (if available)
TreeFam:
Gene Tree for ABALON (if available)

No data available for Orthologs for ABALON Gene

Paralogs for ABALON Gene

No data available for Paralogs for ABALON Gene

Variants for ABALON Gene

Sequence variations from dbSNP and Humsavar for ABALON Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs111521268 -- 31,721,829(+) CGGAA(A/G)AGTTC intron-variant, nc-transcript-variant, reference, synonymous-codon
rs113035747 -- 31,719,812(+) TTTAT(A/G)GCTGG intron-variant, upstream-variant-2KB
rs113186752 -- 31,723,721(+) GGGGA(A/G)GCGGC intron-variant, downstream-variant-500B, upstream-variant-2KB
rs114733446 -- 31,722,479(+) CACTT(A/C)AGTCA intron-variant, nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs115466009 -- 31,721,182(+) TTGAT(A/T)TGGGG intron-variant, upstream-variant-2KB

Relevant External Links for ABALON Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ABALON

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ABALON Gene

Disorders for ABALON Gene

Relevant External Links for ABALON

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ABALON

No disorders were found for ABALON Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ABALON Gene

Publications for ABALON Gene

  1. Long non-coding RNA INXS is a critical mediator of BCL-XS induced apoptosis. (PMID: 24992962) DeOcesano-Pereira C. … Verjovski-Almeida S. (Nucleic Acids Res. 2014) 2 3 64

Products for ABALON Gene

Sources for ABALON Gene

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