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Aliases for AATK-AS1 Gene

Subcategory (RNA class) for AATK-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for AATK-AS1 Gene

  • AATK Antisense RNA 1 2 3 5
  • AATK Antisense RNA 1 (Non-Protein Coding) 2

External Ids for AATK-AS1 Gene

Previous GeneCards Identifiers for AATK-AS1 Gene

  • GC17P079141

Summaries for AATK-AS1 Gene

GeneCards Summary for AATK-AS1 Gene

AATK-AS1 (AATK Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. An important paralog of this gene is PVALB.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AATK-AS1 Gene

Genomics for AATK-AS1 Gene

Regulatory Elements for AATK-AS1 Gene

Enhancers for AATK-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G081125 1.8 FANTOM5 Ensembl ENCODE dbSUPER 12.7 -35.5 -35533 9.8 ZNF133 DMAP1 BRCA1 GLIS2 FOS ZNF263 SP5 GLIS1 MYNN NR2C1 AATK CEP131 LOC100294362 ENSG00000262049 AATK-AS1 GPS1 ARL16 RFNG ENSG00000262877 BAIAP2
GH17G081138 0.7 dbSUPER 12.7 -26.5 -26456 1.6 ZNF263 ZSCAN4 INSM2 MNT PAX8 ZFHX2 ZNF707 GLIS2 ZNF341 ZNF524 AATK AATK-AS1 ENSG00000263167 GC17P081143
GH17G081136 0.7 dbSUPER 12.7 -29.0 -29048 0.8 ZNF263 CTCF RFX1 ZIC2 RAD21 GLIS2 ZFHX2 JUND GLIS1 PATZ1 AATK AATK-AS1 ENSG00000263167 GC17P081143
GH17G081163 1.2 ENCODE dbSUPER 0.7 -0.6 -602 2.3 MLX ZFP64 ARID4B DMAP1 ZNF2 ZNF48 ZNF121 GLIS2 MXD4 MIER2 LOC100294362 ENSG00000262049 CEP131 GPS1 MIR1250 AATK ENSG00000265678 ARL16 RFNG ENSG00000262877
GH17G081152 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -11.9 -11944 1.3 HDAC1 PKNOX1 ATF1 TBL1XR1 CREB3L1 ZBTB40 ELK1 EGR1 CREM ELF4 AATK ENSG00000263167 TEPSIN AATK-AS1 GC17P081143
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around AATK-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for AATK-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000099350 793 601 ELF3 TBP MLX ZFP64 ARID4B DMAP1 ZNF2 ZNF48 ZSCAN9 ZNF121

Genomic Location for AATK-AS1 Gene

Chromosome:
17
Start:
81,165,507 bp from pter
End:
81,183,164 bp from pter
Size:
17,658 bases
Orientation:
Plus strand

Genomic View for AATK-AS1 Gene

Genes around AATK-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AATK-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AATK-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AATK-AS1 Gene

Proteins for AATK-AS1 Gene

  • Protein details for AATK-AS1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GWK0
    Recommended name:
    AATK antisense RNA 1
    Protein Accession:
    A0A1B0GWK0

    Protein attributes for AATK-AS1 Gene

    Size:
    134 amino acids
    Molecular mass:
    15275 Da
    Quaternary structure:
    No Data Available

neXtProt entry for AATK-AS1 Gene

Post-translational modifications for AATK-AS1 Gene

No Post-translational modifications

Other Protein References for AATK-AS1 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for AATK-AS1 Gene

Domains & Families for AATK-AS1 Gene

Protein Domains for AATK-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with AATK-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AATK-AS1 Gene

Function for AATK-AS1 Gene

Gene Ontology (GO) - Molecular Function for AATK-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with AATK-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AATK-AS1 Gene

Localization for AATK-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for AATK-AS1 Gene

Pathways & Interactions for AATK-AS1 Gene

SuperPathways for AATK-AS1 Gene

No Data Available

Interacting Proteins for AATK-AS1 Gene

Gene Ontology (GO) - Biological Process for AATK-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AATK-AS1 Gene

Drugs & Compounds for AATK-AS1 Gene

No Compound Related Data Available

Transcripts for AATK-AS1 Gene

mRNA/cDNA for AATK-AS1 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AATK-AS1 Gene

AATK antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for AATK-AS1 Gene

No ASD Table

Relevant External Links for AATK-AS1 Gene

GeneLoc Exon Structure for
AATK-AS1
ECgene alternative splicing isoforms for
AATK-AS1

Expression for AATK-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AATK-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for AATK-AS1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x6.0) and Brain - Cerebellum (x5.9).

SOURCE GeneReport for Unigene cluster for AATK-AS1 Gene:

Hs.591202
genes like me logo Genes that share expression patterns with AATK-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AATK-AS1 Gene

Orthologs for AATK-AS1 Gene

Evolution for AATK-AS1 Gene

ENSEMBL:
Gene Tree for AATK-AS1 (if available)
TreeFam:
Gene Tree for AATK-AS1 (if available)

No data available for Orthologs for AATK-AS1 Gene

Paralogs for AATK-AS1 Gene

Paralogs for AATK-AS1 Gene

genes like me logo Genes that share paralogs with AATK-AS1: view

Variants for AATK-AS1 Gene

Sequence variations from dbSNP and Humsavar for AATK-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000075806 -- 81,167,786(+) TAAGG(A/G)GCGCT intron-variant, upstream-variant-2KB
rs1000239539 -- 81,182,865(+) GTAGT(C/T)CAGGC intron-variant
rs1000264795 -- 81,172,154(+) TTCCA(C/T)TGTGT intron-variant
rs1000293254 -- 81,183,093(+) TGGGG(A/C)CGGTA nc-transcript-variant
rs1000447476 -- 81,179,050(+) AGCCC(C/T)GAGAT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for AATK-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv3292n100 CNV gain 25217958
dgv46n68 CNV loss 17160897
esv26223 CNV gain+loss 19812545
esv2758707 CNV gain 17122850
esv3353282 CNV duplication 20981092
esv3554876 CNV deletion 23714750
nsv1057306 CNV loss 25217958
nsv1064123 CNV gain 25217958
nsv1065052 CNV gain 25217958
nsv1066947 CNV loss 25217958
nsv1127605 CNV deletion 24896259
nsv1143868 CNV deletion 24896259
nsv428351 CNV gain 18775914
nsv470619 CNV loss 18288195
nsv473977 CNV novel sequence insertion 20440878
nsv828128 CNV loss 20364138
nsv828133 CNV loss 20364138
nsv952389 CNV deletion 24416366

Relevant External Links for AATK-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AATK-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AATK-AS1 Gene

Disorders for AATK-AS1 Gene

Relevant External Links for AATK-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AATK-AS1

No disorders were found for AATK-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AATK-AS1 Gene

Publications for AATK-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for AATK-AS1 Gene

Sources for AATK-AS1 Gene

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