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Aliases for AATK-AS1 Gene

Subcategory (RNA class) for AATK-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for AATK-AS1 Gene

  • AATK Antisense RNA 1 2 3
  • AATK Antisense RNA 1 (Non-Protein Coding) 2

External Ids for AATK-AS1 Gene

ORGUL Members for AATK-AS1 Gene

Previous GeneCards Identifiers for AATK-AS1 Gene

  • GC17P079141

Summaries for AATK-AS1 Gene

GeneCards Summary for AATK-AS1 Gene

AATK-AS1 (AATK Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AATK-AS1 Gene

Genomics for AATK-AS1 Gene

Genomic Location for AATK-AS1 Gene

Start:
81,165,507 bp from pter
End:
81,183,164 bp from pter
Size:
17,658 bases
Orientation:
Plus strand

Genomic View for AATK-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for AATK-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AATK-AS1 Gene

No data available for Regulatory Elements for AATK-AS1 Gene

Proteins for AATK-AS1 Gene

Post-translational modifications for AATK-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AATK-AS1 Gene

Domains for AATK-AS1 Gene

Gene Families for AATK-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with AATK-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AATK-AS1 Gene

Function for AATK-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for AATK-AS1 Gene

Localization for AATK-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for AATK-AS1 Gene

Pathways for AATK-AS1 Gene

SuperPathways for AATK-AS1 Gene

No Data Available

Interacting Proteins for AATK-AS1 Gene

Gene Ontology (GO) - Biological Process for AATK-AS1 Gene

None

No data available for Pathways by source for AATK-AS1 Gene

Transcripts for AATK-AS1 Gene

mRNA/cDNA for AATK-AS1 Gene

(4) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AATK-AS1 Gene

AATK antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for AATK-AS1 Gene

No ASD Table

Relevant External Links for AATK-AS1 Gene

GeneLoc Exon Structure for
AATK-AS1
ECgene alternative splicing isoforms for
AATK-AS1

Expression for AATK-AS1 Gene

mRNA expression in normal human tissues for AATK-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for AATK-AS1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (6.0) and Brain - Cerebellum (5.9).

SOURCE GeneReport for Unigene cluster for AATK-AS1 Gene Hs.591202

genes like me logo Genes that share expressions with AATK-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for AATK-AS1 Gene

Orthologs for AATK-AS1 Gene

Evolution for AATK-AS1 Gene

ENSEMBL:
Gene Tree for AATK-AS1 (if available)
TreeFam:
Gene Tree for AATK-AS1 (if available)

No data available for Orthologs for AATK-AS1 Gene

Paralogs for AATK-AS1 Gene

No data available for Paralogs for AATK-AS1 Gene

Variants for AATK-AS1 Gene

Sequence variations from dbSNP and Humsavar for AATK-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs868772 -- 81,172,428(+) TATAT(C/G)TAATG intron-variant
rs906180 -- 81,181,316(-) ATGTC(C/T)GTGGG nc-transcript-variant
rs906181 -- 81,180,838(-) TTCAC(A/G)GGGTG intron-variant
rs1112501 -- 81,182,548(+) GCGGG(A/G)GGGTC intron-variant
rs1506683 -- 81,173,272(-) TGTCC(A/G)TGGGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for AATK-AS1 Gene

Variant ID Type Subtype PubMed ID
esv26223 CNV Gain+Loss 19812545
nsv828128 CNV Loss 20364138
dgv3304n71 CNV Loss 21882294
nsv909000 CNV Loss 21882294
dgv3308n71 CNV Loss 21882294
nsv470619 CNV Loss 18288195
dgv3310n71 CNV Loss 21882294
dgv3312n71 CNV Loss 21882294
dgv3313n71 CNV Loss 21882294
dgv3314n71 CNV Loss 21882294
nsv909047 CNV Gain 21882294
dgv3315n71 CNV Loss 21882294
dgv3316n71 CNV Loss 21882294
nsv909052 CNV Loss 21882294
dgv46n68 CNV Loss 17160897
dgv3317n71 CNV Loss 21882294
dgv1003e1 CNV Complex 17122850
nsv428351 CNV Gain 18775914
dgv3318n71 CNV Loss 21882294
nsv828133 CNV Loss 20364138
nsv909060 CNV Loss 21882294

Relevant External Links for AATK-AS1 Gene

HapMap Linkage Disequilibrium report
AATK-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for AATK-AS1 Gene

Disorders for AATK-AS1 Gene

No disorders were found for AATK-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for AATK-AS1 Gene

Publications for AATK-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for AATK-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate AATK-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for AATK-AS1
    • Block miRNA regulation of AATK-AS1 using miScript Target Protectors

    Sources for AATK-AS1 Gene

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