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AATF Gene

protein-coding   GIFtS: 59

GC17P032380
apoptosis antagonizing transcription factor
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
CHE-1 1, 2
CHE1 1, 2, 3, 5
DED 1, 2, 3
Descriptions
Apoptosis-antagonizing transcription factor 3
Rb-binding protein Che-1 3
apoptosis antagonizing transcription factor 2
External Ids
HGNC: 192351
Entrez Gene: 265742
UniProtKB: Q9NY613
Ensembl: ENSG000001082707
Search outside databases for aliases for AATF gene

Previous GC identifers: GC17P034690 GC17P037258 GC17P035037 GC17P035501

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for AATF:
The protein encoded by this gene was identified on the basis of its interaction with MAP3K12/DLK, a
protein kinase known to be involved in the induction of cell apoptosis. This gene product contains
a leucine zipper, which is a characteristic motif of transcription factors, and was shown to
exhibit strong transactivation activity when fused to Gal4 DNA binding domain. Overexpression of
this gene interfered with MAP3K12 induced apoptosis. [provided by RefSeq]

UniProtKB/Swiss-Prot: AATF_HUMAN, Q9NY61
Function: May function as a general inhibitor of the histone deacetylase HDAC1. Binding to the
pocket region of RB1 may displace HDAC1 from RB1/E2F complexes, leading to activation of E2F
target genes and cell cycle progression. Conversely, displacement of HDAC1 from SP1 bound to the
CDKN1A promoter leads to increased expression of this CDK inhibitor and blocks cell cycle
progression. Also antagonizes PAWR mediated induction of aberrant amyloid peptide production in
Alzheimer disease (presenile and senile dementia), although the molecular basis for this
phenomenon has not been described to date

Gene Wiki entry for AATF (Apoptosis_antagonizing_transcription_factor)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the AATF gene  

Entrez Gene cytogenetic band: 17q11.2-q12   Ensembl cytogenetic band:  17q12   HGNC cytogenetic band: 17q12

AATF Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17P032380:     (about GC identifiers)

Start:
32,380,288 bp from pter
End:
32,488,284 bp from pter
Size:
107,997 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000017.9  NT_078100.1  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: AATF_HUMAN, Q9NY61 (See protein sequence)
Recommended Name: Protein AATF  
Size: 560 amino acids; 63133 Da
Subunit: Binds PAWR, POLR2J, RB1/RB, RBL1/P107, RBL2/P130, and SP1. May also bind MAPT
Subcellular location: Nucleus, nucleolus
Sequence caution: Sequence=AAD52016.1; Type=Frameshift; Positions=355, 365, 487, 498, 503;
Secondary accessions: A6NCJ6 B3KQ26 Q9P0A4 Q9UNX5

Post-translational modifications:

  • Hyperphosphorylated during the G1/S phase transition1
  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_036270.1  

    ENSEMBL proteins: 
    ENSP00000225402 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (AATF)
    Human Recombinant Proteins from Abnova (AATF)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    5 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634 nucleus IDA12429849
    GO:0005730 nucleolus IDA18029348
    GO:0005813 centrosome IDA18029348
    GO:0005925 focal adhesion IDA18029348
    GO:0030054 cell junction IDA18029348
    About this table

    Antibodies for AATF: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for AATF
    Browse R&D Systems for Antibodies
    Antibodies from Abcam (AATF), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (AATF)
    Novus Biologicals Antibodies for AATF

    Assays for AATF: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    1 InterPro domain/family:
     IPR012617 TRAUB


       GeneDecks  AATF for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry Q9NY61

    ProtoNet protein and cluster: Q9NY61

    1 Blocks protein family: IPB012617 TRAUB

    UniProtKB/Swiss-Prot: AATF_HUMAN, Q9NY61
    Similarity: Belongs to the AATF family

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (AATF)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (AATF)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_012138

                  Applied Biosystems Silencer® siRNAs for AATF

                  Sigma-Aldrich siRNA for AATF  
                         Sigma-Aldrich shRNA Panels and shRNA for AATF  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for AATF
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_012138
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_012138
                                     untagged cDNA clones in CMV expression vector (see all 2): NM_012138 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_012138

    UniProtKB/Swiss-Prot: AATF_HUMAN, Q9NY61
    Function: May function as a general inhibitor of the histone deacetylase HDAC1. Binding to the
    pocket region of RB1 may displace HDAC1 from RB1/E2F complexes, leading to activation of E2F
    target genes and cell cycle progression. Conversely, displacement of HDAC1 from SP1 bound to the
    CDKN1A promoter leads to increased expression of this CDK inhibitor and blocks cell cycle
    progression. Also antagonizes PAWR mediated induction of aberrant amyloid peptide production in
    Alzheimer disease (presenile and senile dementia), although the molecular basis for this
    phenomenon has not been described to date

    4 MGI mutant phenotypes (inferred from 1 allele(MGI details for Aatf):

    cellularembryogenesisgrowth/sizelethality-prenatal/perinatal

    2 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003700 transcription factor activity TAS10580117
    GO:0005515 protein binding IPI15231747 17157788
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


     Gene Network CentralTM Interacting Genes and Proteins Network for  AATF 


    5/44 Interacting proteins for AATF (ENSP000002254023 Q9NY611, 2) via UniProtKB, MINT, and/or STRING (see all 44 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    CHEK2O960171STRING (score=.959) EBI-372428, EBI-1180783
    RELAQ042061STRING (score=.727) EBI-372428, EBI-73886
    MAPTP106362STRING (score=.968) MINT-49642 MINT-49641
    POLR2JP524352STRING (score=.788) MINT-49955 MINT-49956
    ATMQ133151EBI-372428, EBI-495465
    About this table

    1 Gene Ontology (GO) biological process term (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006916 anti-apoptosis TAS10580117
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for AATF
    1 Novoseek chemical compound relationship for AATF gene
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    leucine 39.44 3 15207272 (1), 14627703 (1)
    About this table


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (AATF)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (AATF)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_012138

                  Sigma-Aldrich siRNA for AATF  
                         Sigma-Aldrich shRNA Panels and shRNA for AATF  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_012138  

    REFSEQ mRNAs for AATF gene: 

    NM_012138.3   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_012138  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_012138
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_012138
                                     untagged cDNA clones in CMV expression vector (see all 2): NM_012138 

    Additional cDNA sequence: 

    AF083208.1 AF161395.1 AJ249940.2 AK026173.1 AK057229.1 AK130740.1 BC000591.2 CR616929.1 

    21 DOTS entries:

    DT.92455094  DT.97860038  DT.99932217  DT.452954  DT.316399  DT.120894106  DT.100799882  DT.100799876 
    DT.91826648  DT.92455082  DT.95167005  DT.120893889  DT.87017028  DT.95166734  DT.120893894  DT.120894069 
    DT.91733647  DT.91994800  DT.95167000  DT.120894026  DT.120894145 

    24/362 AceView cDNA sequences (see all 362 ):

    BU740585 AI817450 F34702 CB150276 BU169820 BG231720 BM855480 BG391551 
    CB151083 BE312780 BQ056766 BG191682 W77795 BU742473 AI003563 BM713071 
    AJ249940 AW964198 BQ225065 BC000591 AA290643 BM825155 AA291023 CB125443 

    highest scoring ESTs for AATF:

    U51698 AA099988 AA211386 AA291023 AA317577 AA379087 AA379088 AA579979 AA625561 AA625749 

    Unigene Cluster for AATF:

    Apoptosis antagonizing transcription factor
    Hs.195740  [show with all ESTs]
    Unigene Representative Sequence: NM_012138


    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for AATF

    ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12a · 12b · 12c
    SP1:                                                                                      -                           
    SP2:                    -     -     -                                                                                 
    SP3:                                                                                                                  
    SP4:                                                                                      -     -                     
    SP5:                                                                                                                  

    About this scheme

    ECgene alternative splicing isoforms for AATF

    1 Ensembl transcript including schematic representation:
    ENST00000225402  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    AATF expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for AATF

    1 / 2 / 3

    3 probe-sets matching AATF gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

    32117_at2, 3 U95-A 1 1.00 1.00 1.00 1.00 U51698 1.00 1.00 1.00 1

    209165_at2, 3 U133-A 1 1.00 1.00 -- -- AF083208 0.80 1.00 0.91 1

    209165_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    About this table
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: GCACCTATTG

    SOURCE GeneReport for Unigene cluster: Hs.195740

    Expression variation in blood from EXPOLDB for AATF

    UniProtKB/Swiss-Prot: AATF_HUMAN, Q9NY61
    Tissue specificity: Ubiquitously expressed. Expressed at high levels in brain, heart, kidney,
    placenta and thymus

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for AATF gene from 5/21 species (see all 21 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    AATF1   -- apoptosis antagonizing transcription factor 89.35(n)
    89.77(a)
    480595  XM_537715.2  XP_537715.2 
    chimpanzee
    (Pan troglodytes)
    AATF1   -- apoptosis antagonizing transcription factor 99.52(n)
    99.64(a)
    454601  XM_511427.2  XP_511427.2 
    cow
    (Bos taurus)
    AATF1   -- apoptosis antagonizing transcription factor 88.31(n)
    89.42(a)
    786013  XM_001252957.1  XP_001252958.1 
    rat
    (Rattus norvegicus)
    Aatf1   -- apoptosis antagonizing transcription factor 83.97(n)
    84.87(a)
    114512  NM_053720.1  NP_446172.1 
    mouse
    (Mus musculus)
    Aatf1, 5 115
    apoptosis antagonizing transcription factor1, 5 83.75(n)1
    84.13(a)1
    563211  NM_019816.11  NP_062790.11 
     AF2228015  AF3222235  (see all 18)
    About this table        Species with no ortholog for AATF

    ENSEMBL Gene Tree for AATF
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

      --
    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/556 NCBI SNPs in AATF are shown (see all 556 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 153)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 17 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs118707491,2
    A,C,F,H32488438(+) acatgT/Cagatt 1 -- ng318Minor allele frequency- C:0.11EU EA WA 810
    --
    rs72167581,2
    A,C,F,H32379482(+) ACCGTG/TGGGGG 1 -- ng516Minor allele frequency- T:0.27NA EU EA 422
    rs10018141,2
    A,C,F,H32379903(-) GGATAC/TGCACG 1 -- ng5119Minor allele frequency- T:0.17NA EA MN EU WA 2954
    rs23066581,2
    C,F32380425(-) GACTCA/C/GGCCAG 1 -- ut514EA MN 2938
    rs116534341,2
    C,F32488119(+) TGGTGC/TGGCTG 1 -- ut31 ese32Minor allele frequency- T:0.06NA 182
    rs116505751,2
    H32384701(+) GAAGAA/CCCAGA 1 N/T mis14Minor allele frequency- C:0.00EU EA WA 418
    --
    rs283844731,2
    F32380170(+) CACTGG/-CCGCG 1 -- ng512Minor allele frequency- -:0.09MN EA 1252
    rs10450561,2
    C,F,H,O32420754(+) CGCTCT/CGTCTA 1 S/S syn18Minor allele frequency- C:0.18MN NA EU EA WA 744
    rs171391071,2
    C,F,H32450464(+) CCCAAC/TGATCA 1 N/N syn1 ese37Minor allele frequency- T:0.03NA EU EA WA 562
    rs8739501,2
    A,C,F,H,O32452041(-) GAGCTA/GCTTGG 1 -- int116Minor allele frequency- G:0.20EA NA EU WA 2564
    About this table

    HapMap Linkage Disequilibrium images for AATF (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 608463

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/28 PubMed articles for AATF gene (see all 28 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 26574 HGNC: 19235 AceView: AATF Ensembl:ENSG00000108270 euGenes: HUgn26574
    ECgene: AATF H-InvDB: AATF
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    ATLAS Chromosomes in Cancer entry for AATF Genetics and Cytogenetics in Oncology and Haematology
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for AATF:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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     Predesigned and custom siRNAs for AATF Antibodies for AATF
     Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
     Lentivirus-delivered shRNAs for AATF Browse small molecules at Sigma-Aldrich
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     Antibodies for AATF

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