Free for academic non-profit institutions. Other users need a Commercial license

Aliases for AATBC Gene

Subcategory (RNA class) for AATBC Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for AATBC Gene

  • Apoptosis Associated Transcript In Bladder Cancer 2 3 5
  • Apoptosis-Associated Transcript In Bladder Cancer 2

External Ids for AATBC Gene

Summaries for AATBC Gene

GeneCards Summary for AATBC Gene

AATBC (Apoptosis Associated Transcript In Bladder Cancer) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for AATBC Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AATBC Gene

Genomics for AATBC Gene

Regulatory Elements for AATBC Gene

Enhancers for AATBC Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21H043974 1.5 Ensembl ENCODE dbSUPER 17.7 -162.9 -162912 0 HDGF ATF1 ARNT SIN3A YBX1 GLI4 TCF12 CBX5 ZNF207 ZNF143 RRP1B PWP2 U2AF1 TRAPPC10 AATBC SIK1 UBE2G2 RNU6-859P AGPAT3 RRP1
GH21H043892 1.4 Ensembl ENCODE dbSUPER 16.9 -81.2 -81230 2 HDAC1 HDGF NFXL1 BATF ZNF766 ETV6 ATF7 RUNX3 CREM ZBTB2 AATBC AGPAT3 RNU6-859P GC21M043897
GH21H043834 0.7 Ensembl ENCODE 17.6 -22.5 -22534 1 MAX ZBTB33 MYC RRP1 AATBC AGPAT3 TMEM97P1 RNU6-859P CSTB PDXK GC21M043858
GH21H043809 1.3 Ensembl ENCODE 8.8 +1.0 977 3 HDGF PKNOX1 ATF1 ARNT ARID4B SIN3A ZNF2 ZBTB7B GLIS2 ZNF143 ENSG00000184441 CSTB WDR4 PWP2 TRAPPC10 RRP1B C21orf2 AATBC RRP1 GC21P043803
GH21H043842 0.6 Ensembl 18.7 -30.2 -30194 0 CEBPB JUNB CEBPG BATF ZNF707 IKZF1 CEBPA ZNF524 NBN PRDM1 AATBC AGPAT3 PWP2 RNU6-859P CSTB TRAPPC10 WDR4 RRP1B ENSG00000184441 GC21M043858
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around AATBC on UCSC Golden Path with GeneCards custom track

Genomic Location for AATBC Gene

Chromosome:
21
Start:
43,805,758 bp from pter
End:
43,812,567 bp from pter
Size:
6,810 bases
Orientation:
Minus strand

Genomic View for AATBC Gene

Genes around AATBC on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AATBC Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AATBC Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AATBC Gene

Proteins for AATBC Gene

Post-translational modifications for AATBC Gene

No Post-translational modifications

No data available for DME Specific Peptides for AATBC Gene

Domains & Families for AATBC Gene

Gene Families for AATBC Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with AATBC: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AATBC Gene

Function for AATBC Gene

Phenotypes From GWAS Catalog for AATBC Gene

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AATBC Gene

Localization for AATBC Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AATBC Gene

Pathways & Interactions for AATBC Gene

SuperPathways for AATBC Gene

No Data Available

Interacting Proteins for AATBC Gene

Gene Ontology (GO) - Biological Process for AATBC Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AATBC Gene

Drugs & Compounds for AATBC Gene

No Compound Related Data Available

Transcripts for AATBC Gene

mRNA/cDNA for AATBC Gene

(1) REFSEQ mRNAs :
(12) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for AATBC Gene

No ASD Table

Relevant External Links for AATBC Gene

GeneLoc Exon Structure for
AATBC
ECgene alternative splicing isoforms for
AATBC

Expression for AATBC Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AATBC Gene

NURSA nuclear receptor signaling pathways regulating expression of AATBC Gene:

AATBC
genes like me logo Genes that share expression patterns with AATBC: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AATBC Gene

Orthologs for AATBC Gene

Evolution for AATBC Gene

ENSEMBL:
Gene Tree for AATBC (if available)
TreeFam:
Gene Tree for AATBC (if available)

No data available for Orthologs for AATBC Gene

Paralogs for AATBC Gene

No data available for Paralogs for AATBC Gene

Variants for AATBC Gene

Sequence variations from dbSNP and Humsavar for AATBC Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs1000236248 -- 43,810,315(+) AGGGA(-/CC)ATCTC nc-transcript-variant
rs1000664766 -- 43,811,614(+) GCCGG(A/G/T)AGCCC nc-transcript-variant
rs1001605027 -- 43,813,134(+) TGGCC(A/G)CTGTC upstream-variant-2KB
rs1001907691 -- 43,812,028(+) GTCCC(A/G)TGCTC nc-transcript-variant
rs1001938863 -- 43,809,261(+) AGCAG(C/T)TCTGG nc-transcript-variant

Relevant External Links for AATBC Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AATBC

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for AATBC Gene

Disorders for AATBC Gene

Relevant External Links for AATBC

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AATBC

No disorders were found for AATBC Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AATBC Gene

Publications for AATBC Gene

  1. Knockdown of a novel lincRNA AATBC suppresses proliferation and induces apoptosis in bladder cancer. (PMID: 25473900) Zhao F … Xie W (Oncotarget 2015) 2 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for AATBC Gene

Sources for AATBC Gene

Content
Loading form....