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Aliases for AASDH Gene

Aliases for AASDH Gene

  • Aminoadipate-Semialdehyde Dehydrogenase 2 3 4 5
  • Acyl-CoA Synthetase Family Member 4 2 3
  • ACSF4 3 4
  • 2-Aminoadipic 6-Semialdehyde Dehydrogenase 3
  • Non-Ribosomal Peptide Synthetase 1098 3
  • Non-Ribosomal Peptide Synthetase 998 3
  • Protein NRPS998 4
  • EC 6.2.1.- 4
  • NRPS1098 3
  • NRPS998 3
  • LYS2 3
  • U26 4

External Ids for AASDH Gene

Previous GeneCards Identifiers for AASDH Gene

  • GC04M057046
  • GC04M056899
  • GC04M057204
  • GC04M053158

Summaries for AASDH Gene

Entrez Gene Summary for AASDH Gene

  • This gene encodes a member of the non-ribosome peptide syntesase (NRPS) enzyme family. The encoded protein contains an AMP-binding domain, PP-binding (phosphopantetheine, or pantetheine 4'phosphate-binding) domain and the Pyrrolo-quinoline quinon (PQQ) binding domain. The protein is expressed in several adult tissues. [provided by RefSeq, Apr 2016]

GeneCards Summary for AASDH Gene

AASDH (Aminoadipate-Semialdehyde Dehydrogenase) is a Protein Coding gene. GO annotations related to this gene include acid-thiol ligase activity.

UniProtKB/Swiss-Prot for AASDH Gene

  • Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA.

Additional gene information for AASDH Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AASDH Gene

Genomics for AASDH Gene

Regulatory Elements for AASDH Gene

Enhancers for AASDH Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04H056385 1.4 FANTOM5 ENCODE 30.6 +1.3 1324 4 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 SRP72 AASDH CEP135 ENSG00000251799 SPINK2 ENSG00000269921
GH04H056433 1.1 ENCODE 33.8 -46.4 -46445 4 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 SRP72 AASDH CEP135 RN7SKP30 POLR2B ENSG00000269921 ARL9 GC04P056436 GC04P056437 PAICS
GH04H056408 1.1 Ensembl ENCODE 30.3 -21.0 -20999 2 PKNOX1 FOXA2 ARNT BMI1 ZBTB40 YY1 FOS ZNF362 REST ZNF518A SRP72 AASDH PPAT PAICS ENSG00000269921 ENSG00000251799 SPINK2 LOC100506514
GH04H055543 1.1 ENCODE 25.6 +843.0 843042 4 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF766 ZNF143 ZNF207 RN7SKP30 TMEM165 AASDH CEP135 SRP72 NMU EXOC1 CLOCK ENSG00000272969 SRD5A3
GH04H056700 0.8 ENCODE 27.3 -311.9 -311859 1 ZSCAN4 BACH1 ZNF175 PYGO2 ZNF644 ZNF507 IRF9 ZNF766 ELK1 NFE2 AASDH SRP72 ENSG00000269921 CEP135 POLR2B HOPX LOC105377667 LOC105377666
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around AASDH on UCSC Golden Path with GeneCards custom track

Promoters for AASDH Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000168654 1918 2201 HDGF PKNOX1 FOXA2 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143

Genomic Location for AASDH Gene

Chromosome:
4
Start:
56,337,687 bp from pter
End:
56,389,418 bp from pter
Size:
51,732 bases
Orientation:
Minus strand

Genomic View for AASDH Gene

Genes around AASDH on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AASDH Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AASDH Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AASDH Gene

Proteins for AASDH Gene

  • Protein details for AASDH Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q4L235-ACSF4_HUMAN
    Recommended name:
    Acyl-CoA synthetase family member 4
    Protein Accession:
    Q4L235
    Secondary Accessions:
    • A5D8V3
    • A5PL22
    • Q63HK2
    • Q63HR7
    • Q6IPP8
    • Q6TFZ6
    • Q7Z5Y3
    • Q96BW4
    • Q9P064

    Protein attributes for AASDH Gene

    Size:
    1098 amino acids
    Molecular mass:
    122597 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAH56482.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for AASDH Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for AASDH Gene

Post-translational modifications for AASDH Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for AASDH Gene

Domains & Families for AASDH Gene

Gene Families for AASDH Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Predicted membrane proteins

Suggested Antigen Peptide Sequences for AASDH Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q4L235

UniProtKB/Swiss-Prot:

ACSF4_HUMAN :
  • Belongs to the ATP-dependent AMP-binding enzyme family.
Family:
  • Belongs to the ATP-dependent AMP-binding enzyme family.
genes like me logo Genes that share domains with AASDH: view

Function for AASDH Gene

Molecular function for AASDH Gene

UniProtKB/Swiss-Prot Function:
Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA.

Enzyme Numbers (IUBMB) for AASDH Gene

Phenotypes From GWAS Catalog for AASDH Gene

Gene Ontology (GO) - Molecular Function for AASDH Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003824 catalytic activity IEA --
GO:0005524 ATP binding IEA --
GO:0016874 ligase activity IEA --
GO:0016878 acid-thiol ligase activity ISS --
genes like me logo Genes that share ontologies with AASDH: view
genes like me logo Genes that share phenotypes with AASDH: view

Animal Model Products

  • Taconic Biosciences Mouse Models for AASDH

CRISPR Products

Inhibitory RNA Products

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for AASDH Gene

Localization for AASDH Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for AASDH gene
Compartment Confidence
nucleus 3
cytosol 3
plasma membrane 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AASDH Gene

Pathways & Interactions for AASDH Gene

SuperPathways for AASDH Gene

No Data Available

Interacting Proteins for AASDH Gene

Gene Ontology (GO) - Biological Process for AASDH Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006629 lipid metabolic process IEA --
GO:0006631 fatty acid metabolic process ISS --
GO:0008152 metabolic process IEA --
GO:0019482 beta-alanine metabolic process IEA --
GO:0043041 amino acid activation for nonribosomal peptide biosynthetic process IEA --
genes like me logo Genes that share ontologies with AASDH: view

No data available for Pathways by source and SIGNOR curated interactions for AASDH Gene

Drugs & Compounds for AASDH Gene

(8) Drugs for AASDH Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Phosphoric acid Approved Pharma 0
Water Approved Pharma 0
Adenosine monophosphate Approved Nutra 0
Hexanoyl-CoA Experimental Pharma 0
Propanoyl-CoA Experimental Pharma 0

(36) Additional Compounds for AASDH Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
(2E)-Decenoyl-CoA
  • (E)-S-2-decenoate
  • (E)-S-2-decenoate CoA
  • (E)-S-2-decenoate Coenzyme A
  • (E)-S-2-decenoic acid
  • 2-trans-Decenoyl-CoA
10018-95-8
(2E)-Dodecenoyl-CoA
  • (2E)-Dodec-2-enoyl-CoA
  • (2E)-Dodec-2-enoyl-Coenzyme A
  • 2-trans-Dodecenoyl-CoA
  • 2-trans-Dodecenoyl-Coenzyme A
1066-12-2
(2E)-Hexadecenoyl-CoA
  • (2E)-Hexadecenoyl-CoA
  • (2E)-Hexadecenoyl-Coenzyme A
  • trans-2-Hexadecenoyl-CoA
  • trans-2-Hexadecenoyl-Coenzyme A
4460-95-1
(2E)-Octenoyl-CoA
  • (E)-S-2-octenoate
  • (E)-S-2-octenoate CoA
  • (E)-S-2-octenoate Coenzyme A
  • (E)-S-2-octenoic acid
  • 2,3-trans-Octenoyl coenzyme A
10018-94-7
(2E)-Tetradecenoyl-CoA
  • (2E)-Tetradecenoyl-CoA
  • (2E)-Tetradecenoyl-Coenzyme A
  • Trans-tetra-dec-2-enoyl-CoA
  • Trans-tetra-dec-2-enoyl-CoA.
  • Trans-tetra-dec-2-enoyl-Coenzyme A
38795-33-4
genes like me logo Genes that share compounds with AASDH: view

Transcripts for AASDH Gene

Unigene Clusters for AASDH Gene

Aminoadipate-semialdehyde dehydrogenase:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for AASDH Gene

No ASD Table

Relevant External Links for AASDH Gene

GeneLoc Exon Structure for
AASDH
ECgene alternative splicing isoforms for
AASDH

Expression for AASDH Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AASDH Gene

Protein differential expression in normal tissues from HIPED for AASDH Gene

This gene is overexpressed in Heart (50.5) and Plasma (13.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for AASDH Gene



Protein tissue co-expression partners for AASDH Gene

NURSA nuclear receptor signaling pathways regulating expression of AASDH Gene:

AASDH

SOURCE GeneReport for Unigene cluster for AASDH Gene:

Hs.104347

mRNA Expression by UniProt/SwissProt for AASDH Gene:

Q4L235-ACSF4_HUMAN
Tissue specificity: Ubiquitously expressed in adult tissues.

Evidence on tissue expression from TISSUES for AASDH Gene

  • Intestine(4.2)
  • Liver(4.2)
  • Nervous system(4.2)
  • Blood(4)
genes like me logo Genes that share expression patterns with AASDH: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for AASDH Gene

Orthologs for AASDH Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for AASDH Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia AASDH 33 34
  • 99.76 (n)
dog
(Canis familiaris)
Mammalia AASDH 33 34
  • 89.32 (n)
cow
(Bos Taurus)
Mammalia AASDH 33 34
  • 88.2 (n)
rat
(Rattus norvegicus)
Mammalia Aasdh 33
  • 77.76 (n)
mouse
(Mus musculus)
Mammalia Aasdh 33 16 34
  • 77.64 (n)
oppossum
(Monodelphis domestica)
Mammalia AASDH 34
  • 67 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia AASDH 34
  • 55 (a)
OneToOne
chicken
(Gallus gallus)
Aves AASDH 33 34
  • 66.18 (n)
lizard
(Anolis carolinensis)
Reptilia AASDH 34
  • 57 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia aasdh 33
  • 58.09 (n)
African clawed frog
(Xenopus laevis)
Amphibia Xl.3073 33
zebrafish
(Danio rerio)
Actinopterygii aasdh 33 34
  • 52.34 (n)
fruit fly
(Drosophila melanogaster)
Insecta U26 33 34
  • 44.11 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP010071 33
  • 38.79 (n)
worm
(Caenorhabditis elegans)
Secernentea W09D6.1 34
  • 11 (a)
OneToMany
Y66D12A.14 34
  • 8 (a)
OneToMany
C41A3.1 34
  • 2 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes LYS2 36
thale cress
(Arabidopsis thaliana)
eudicotyledons AT5G35930 33
  • 43.55 (n)
rice
(Oryza sativa)
Liliopsida Os06g0111600 33
  • 45.11 (n)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.702 33
Species where no ortholog for AASDH was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for AASDH Gene

ENSEMBL:
Gene Tree for AASDH (if available)
TreeFam:
Gene Tree for AASDH (if available)

Paralogs for AASDH Gene

No data available for Paralogs for AASDH Gene

Variants for AASDH Gene

Sequence variations from dbSNP and Humsavar for AASDH Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000073960 -- 56,342,354(+) AAACA(C/T)CCTGA intron-variant
rs1000226496 -- 56,362,028(+) CCAAG(A/G)GTATG intron-variant
rs1000259093 -- 56,361,786(+) GGCAA(C/T)ACAGG intron-variant
rs1000321453 -- 56,348,393(+) GGGAC(A/T)ACAGG intron-variant
rs10003484 -- 56,341,840(+) ggcgt(A/G)gtggc intron-variant

Structural Variations from Database of Genomic Variants (DGV) for AASDH Gene

Variant ID Type Subtype PubMed ID
dgv5213n100 CNV gain 25217958
esv3600574 CNV loss 21293372
nsv1161086 CNV duplication 26073780
nsv829940 CNV gain 17160897
nsv964045 CNV duplication 23825009

Variation tolerance for AASDH Gene

Residual Variation Intolerance Score: 78.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 11.34; 92.66% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for AASDH Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AASDH

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for AASDH Gene

Disorders for AASDH Gene

Relevant External Links for AASDH

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AASDH

No disorders were found for AASDH Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AASDH Gene

Publications for AASDH Gene

  1. Cloning and characterization of a novel human homolog* of mouse U26, a putative PQQ-dependent AAS dehydrogenase. (PMID: 15865210) Wang L … Mao Y (Molecular biology reports 2005) 2 3 4 22 60
  2. Evidence for 26 distinct acyl-coenzyme A synthetase genes in the human genome. (PMID: 17762044) Watkins PA … Pevsner J (Journal of lipid research 2007) 2 3 60
  3. Nutritional biochemistry: A new redox-cofactor vitamin for mammals. (PMID: 12712191) Kasahara T … Kato T (Nature 2003) 2 3 60
  4. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 60
  5. A Global Analysis of the Receptor Tyrosine Kinase-Protein Phosphatase Interactome. (PMID: 28065597) Yao Z … Stagljar I (Molecular cell 2016) 3 60

Products for AASDH Gene

Sources for AASDH Gene

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