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Aliases for AARSD1 Gene

Aliases for AARSD1 Gene

  • Alanyl-TRNA Synthetase Domain Containing 1 2 3
  • Alanyl-TRNA Synthetase Domain-Containing Protein 1 4

External Ids for AARSD1 Gene

Previous GeneCards Identifiers for AARSD1 Gene

  • GC17M038357
  • GC17M041102
  • GC17M036868

Summaries for AARSD1 Gene

GeneCards Summary for AARSD1 Gene

AARSD1 (Alanyl-TRNA Synthetase Domain Containing 1) is a Protein Coding gene. GO annotations related to this gene include nucleic acid binding and aminoacyl-tRNA editing activity. An important paralog of this gene is PTGES3L-AARSD1.

UniProtKB/Swiss-Prot for AARSD1 Gene

  • Functions in trans to edit the amino acid moiety from incorrectly charged tRNA(Ala).

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AARSD1 Gene

Genomics for AARSD1 Gene

Regulatory Elements for AARSD1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for AARSD1 Gene

Chromosome:
17
Start:
42,950,526 bp from pter
End:
42,964,498 bp from pter
Size:
13,973 bases
Orientation:
Minus strand

Genomic View for AARSD1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for AARSD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AARSD1 Gene

Proteins for AARSD1 Gene

  • Protein details for AARSD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BTE6-AASD1_HUMAN
    Recommended name:
    Alanyl-tRNA editing protein Aarsd1
    Protein Accession:
    Q9BTE6
    Secondary Accessions:
    • B4DI73

    Protein attributes for AARSD1 Gene

    Size:
    412 amino acids
    Molecular mass:
    45480 Da
    Cofactor:
    Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Note=Binds 1 zinc ion per subunit.;
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for AARSD1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for AARSD1 Gene

Proteomics data for AARSD1 Gene at MOPED

Post-translational modifications for AARSD1 Gene

  • Ubiquitination at Lys 126, Lys 161, and Lys 287

Other Protein References for AARSD1 Gene

No data available for DME Specific Peptides for AARSD1 Gene

Domains & Families for AARSD1 Gene

Suggested Antigen Peptide Sequences for AARSD1 Gene

Graphical View of Domain Structure for InterPro Entry

Q9BTE6

UniProtKB/Swiss-Prot:

AASD1_HUMAN :
  • Belongs to the class-II aminoacyl-tRNA synthetase family. Alax-L subfamily.
Family:
  • Belongs to the class-II aminoacyl-tRNA synthetase family. Alax-L subfamily.
genes like me logo Genes that share domains with AARSD1: view

No data available for Gene Families for AARSD1 Gene

Function for AARSD1 Gene

Molecular function for AARSD1 Gene

UniProtKB/Swiss-Prot Function:
Functions in trans to edit the amino acid moiety from incorrectly charged tRNA(Ala).

Gene Ontology (GO) - Molecular Function for AARSD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000049 tRNA binding IBA --
GO:0000166 nucleotide binding --
GO:0002161 aminoacyl-tRNA editing activity --
GO:0002196 Ser-tRNA(Ala) hydrolase activity IBA --
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with AARSD1: view

Animal Model Products

miRNA for AARSD1 Gene

miRTarBase miRNAs that target AARSD1

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for AARSD1

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targets and HOMER Transcription for AARSD1 Gene

Localization for AARSD1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for AARSD1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for AARSD1 Gene COMPARTMENTS Subcellular localization image for AARSD1 gene
Compartment Confidence
nucleus 5

Gene Ontology (GO) - Cellular Components for AARSD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 21630459
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with AARSD1: view

Pathways & Interactions for AARSD1 Gene

SuperPathways for AARSD1 Gene

No Data Available

Interacting Proteins for AARSD1 Gene

Gene Ontology (GO) - Biological Process for AARSD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006419 alanyl-tRNA aminoacylation IEA --
GO:0006450 regulation of translational fidelity IBA --
GO:0008150 biological_process ND --
GO:0043039 tRNA aminoacylation --
genes like me logo Genes that share ontologies with AARSD1: view

No data available for Pathways by source and SIGNOR curated interactions for AARSD1 Gene

Drugs & Compounds for AARSD1 Gene

No Compound Related Data Available

Transcripts for AARSD1 Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for AARSD1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for AARSD1 Gene

No ASD Table

Relevant External Links for AARSD1 Gene

GeneLoc Exon Structure for
AARSD1
ECgene alternative splicing isoforms for
AARSD1

Expression for AARSD1 Gene

mRNA expression in normal human tissues for AARSD1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for AARSD1 Gene

This gene is overexpressed in Skin (13.0), Peripheral blood mononuclear cells (7.4), and Fetal Brain (6.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MOPED, and MaxQB for AARSD1 Gene



genes like me logo Genes that share expression patterns with AARSD1: view

Protein tissue co-expression partners for AARSD1 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for AARSD1 Gene

Orthologs for AARSD1 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for AARSD1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia AARSD1 35
  • 90.45 (n)
  • 91.02 (a)
dog
(Canis familiaris)
Mammalia AARSD1 35
  • 89 (n)
  • 91.26 (a)
mouse
(Mus musculus)
Mammalia Aarsd1 35
  • 87.7 (n)
  • 90.05 (a)
Aarsd1 36
  • 90 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia AARSD1 35
  • 99.54 (n)
  • 99.17 (a)
rat
(Rattus norvegicus)
Mammalia Aarsd1 35
  • 87.86 (n)
  • 89.81 (a)
platypus
(Ornithorhynchus anatinus)
Mammalia AARSD1 36
  • 55 (a)
OneToOne
chicken
(Gallus gallus)
Aves -- 36
  • 52 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 51 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia aarsd1 35
  • 65.46 (n)
  • 66.52 (a)
African clawed frog
(Xenopus laevis)
Amphibia mgc2744-prov 35
zebrafish
(Danio rerio)
Actinopterygii aarsd1 35
  • 63.02 (n)
  • 63.93 (a)
aarsd1 36
  • 61 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP003413 35
  • 50.38 (n)
  • 45.04 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG10802 35
  • 49.87 (n)
  • 46.85 (a)
CG10802 36
  • 38 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea ZC395.10 36
  • 6 (a)
OneToMany
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0D02794g 35
  • 46.28 (n)
  • 37.27 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes YNL040W 35
  • 43.8 (n)
  • 32.66 (a)
-- 36
  • 7 (a)
OneToMany
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.13055 35
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 47 (a)
OneToOne
Species with no ortholog for AARSD1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for AARSD1 Gene

ENSEMBL:
Gene Tree for AARSD1 (if available)
TreeFam:
Gene Tree for AARSD1 (if available)

Paralogs for AARSD1 Gene

Paralogs for AARSD1 Gene

genes like me logo Genes that share paralogs with AARSD1: view

Variants for AARSD1 Gene

Structural Variations from Database of Genomic Variants (DGV) for AARSD1 Gene

Variant ID Type Subtype PubMed ID
esv33998 OTHER Inversion 15654335
nsv483009 CNV Gain 15286789
nsv908258 CNV Loss 21882294
nsv457742 CNV Loss 19166990
nsv2057 CNV Insertion 18451855
esv2672913 CNV Deletion 23128226
nsv112322 CNV Loss 16902084
esv1503826 CNV Deletion 17803354
esv1214844 CNV Insertion 17803354

Variation tolerance for AARSD1 Gene

Residual Variation Intolerance Score: 71.67% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for AARSD1 Gene

HapMap Linkage Disequilibrium report
AARSD1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for AARSD1 Gene

Disorders for AARSD1 Gene

Relevant External Links for AARSD1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AARSD1
genes like me logo Genes that share disorders with AARSD1: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AARSD1 Gene

Publications for AARSD1 Gene

  1. Panorama of ancient metazoan macromolecular complexes. (PMID: 26344197) Wan C. … Emili A. (Nature 2015) 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 67
  3. Transcriptomic Analysis of mRNAs in Human Monocytic Cells Expressing the HIV-1 Nef Protein and Their Exosomes. (PMID: 25961023) Aqil M. … Jameel S. (Biomed Res Int 2015) 67
  4. A quantitative chaperone interaction network reveals the architecture of cellular protein homeostasis pathways. (PMID: 25036637) Taipale M. … Lindquist S. (Cell 2014) 67
  5. A high-throughput approach for measuring temporal changes in the interactome. (PMID: 22863883) Kristensen A.R. … Foster L.J. (Nat. Methods 2012) 67

Products for AARSD1 Gene

Sources for AARSD1 Gene

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