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Aliases for AACSP1 Gene

Aliases for AACSP1 Gene

  • Acetoacetyl-CoA Synthetase Pseudogene 1 2 3 5
  • Acetoacetyl-CoA Synthetase-Like 2
  • AACSL 3

External Ids for AACSP1 Gene

Previous HGNC Symbols for AACSP1 Gene

  • AACSL

Previous GeneCards Identifiers for AACSP1 Gene

  • GC05M178192

Summaries for AACSP1 Gene

GeneCards Summary for AACSP1 Gene

AACSP1 (Acetoacetyl-CoA Synthetase Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AACSP1 Gene

Genomics for AACSP1 Gene

Regulatory Elements for AACSP1 Gene

Enhancers for AACSP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G178832 0.9 FANTOM5 13.7 -14.5 -14519 0.5 TBP HDAC1 PHF8 L3MBTL2 NFYA SAP30 MNT ZNF83 POLR2A NFYB AACSP1 ZNF879 PIR32270 GC05P178839 GC05P178847 PIR56674
GH05G178839 0.8 ENCODE 14.2 -21.0 -21040 0.2 SIX4 CTCF ESRRA NFIB SIN3A RAD21 CTBP1 GATA3 HSF1 ZNF143 AACSP1 ZNF354B GRM6 CLK4 COL23A1 LOC100129457 PIR56674 GC05P178847 GC05P178839
GH05G178785 0.9 ENCODE 10.1 +31.6 31603 2.5 HDGF FOXA2 PKNOX1 AGO1 SIN3A GLI4 RAD21 ZNF48 HSF1 SCRT2 RNU1-39P AACSP1 PIR60108
GH05G178826 0.2 ENCODE 10 -8.0 -7990 0.1 AACSP1 ENSG00000274813 PIR33333
GH05G178779 1.1 FANTOM5 ENCODE 0.3 +39.3 39328 0.2 FOXA2 THRB RARA ZNF366 SCRT2 MIXL1 ZNF263 PAF1 SSRP1 HMBOX1 CLK4 ZNF879 PIR60108 AACSP1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around AACSP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for AACSP1 Gene

Chromosome:
5
Start:
178,764,861 bp from pter
End:
178,818,435 bp from pter
Size:
53,575 bases
Orientation:
Minus strand

Genomic View for AACSP1 Gene

Genes around AACSP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AACSP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AACSP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AACSP1 Gene

Proteins for AACSP1 Gene

Post-translational modifications for AACSP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AACSP1 Gene

Domains & Families for AACSP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AACSP1 Gene

Function for AACSP1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AACSP1 Gene

Localization for AACSP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for AACSP1 Gene

Pathways & Interactions for AACSP1 Gene

SuperPathways for AACSP1 Gene

No Data Available

Interacting Proteins for AACSP1 Gene

Gene Ontology (GO) - Biological Process for AACSP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AACSP1 Gene

Drugs & Compounds for AACSP1 Gene

No Compound Related Data Available

Transcripts for AACSP1 Gene

mRNA/cDNA for AACSP1 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AACSP1 Gene

Acetoacetyl-CoA synthetase pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for AACSP1 Gene

No ASD Table

Relevant External Links for AACSP1 Gene

GeneLoc Exon Structure for
AACSP1
ECgene alternative splicing isoforms for
AACSP1

Expression for AACSP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AACSP1 Gene

mRNA differential expression in normal tissues according to GTEx for AACSP1 Gene

This gene is overexpressed in Testis (x27.0), Skin - Sun Exposed (Lower leg) (x6.8), and Skin - Not Sun Exposed (Suprapubic) (x4.1).

NURSA nuclear receptor signaling pathways regulating expression of AACSP1 Gene:

AACSP1

SOURCE GeneReport for Unigene cluster for AACSP1 Gene:

Hs.382790
genes like me logo Genes that share expression patterns with AACSP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AACSP1 Gene

Orthologs for AACSP1 Gene

Evolution for AACSP1 Gene

ENSEMBL:
Gene Tree for AACSP1 (if available)
TreeFam:
Gene Tree for AACSP1 (if available)

No data available for Orthologs for AACSP1 Gene

Paralogs for AACSP1 Gene

No data available for Paralogs for AACSP1 Gene

Variants for AACSP1 Gene

Sequence variations from dbSNP and Humsavar for AACSP1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000038763 -- 178,783,425(+) TGTAC(A/G)CACAC intron-variant
rs1000066476 -- 178,779,867(+) AAAGA(A/G)GTTAT intron-variant
rs1000123273 -- 178,812,762(+) CTCAA(C/T)GTCAC intron-variant
rs1000194209 -- 178,805,354(+) TCCAG(A/G)GCAGC intron-variant
rs1000222245 -- 178,798,456(+) TCGTG(G/T)GAAGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for AACSP1 Gene

Variant ID Type Subtype PubMed ID
esv3890769 CNV gain 25118596
nsv1120062 OTHER inversion 24896259
nsv509108 CNV insertion 20534489
nsv600452 CNV gain 21841781

Relevant External Links for AACSP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AACSP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AACSP1 Gene

Disorders for AACSP1 Gene

Relevant External Links for AACSP1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AACSP1

No disorders were found for AACSP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AACSP1 Gene

Publications for AACSP1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for AACSP1 Gene

Sources for AACSP1 Gene

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