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Aliases for AA06 Gene

Aliases for AA06 Gene

  • Uncharacterized LOC100506677 3 5
  • AA02 3
  • AA04 3
  • AA05 3

External Ids for AA06 Gene

Previous GeneCards Identifiers for AA06 Gene

  • GC17M031856

Summaries for AA06 Gene

GeneCards Summary for AA06 Gene

AA06 (Uncharacterized LOC100506677) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AA06 Gene

Genomics for AA06 Gene

Regulatory Elements for AA06 Gene

Enhancers for AA06 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F033524 0.2 ENCODE 0.4 +8.6 8625 0.7 AA06 GC17M033432
GH17F033519 1.2 ENCODE 0.4 +13.1 13112 2.2 CTCF ESRRA REST ZBTB7A RAD21 ZNF217 E2F1 MBD2 SREBF1 GATA3 ASIC2 AA06 GC17M033432
GH17F033521 0.5 ENCODE 0.4 +11.8 11833 0.1 CTCF RAD21 AA06 GC17M033432
GH17F033468 0.2 ENCODE 0.2 +63.9 63861 2.0 JUND ZFP64 FOS CCL13 GC17M033432 AA06
GH17F033463 0.5 ENCODE 0.2 +69.3 69273 2.4 ZNF512 ZMYM3 ZNF16 KDM1A CCL8 ENSG00000226377 GC17M033432 AA06
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around AA06 on UCSC Golden Path with GeneCards custom track

Genomic Location for AA06 Gene

Chromosome:
17
Start:
33,529,787 bp from pter
End:
33,533,760 bp from pter
Size:
3,974 bases
Orientation:
Minus strand

Genomic View for AA06 Gene

Genes around AA06 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AA06 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AA06 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AA06 Gene

Proteins for AA06 Gene

Post-translational modifications for AA06 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AA06 Gene

Domains & Families for AA06 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AA06 Gene

Function for AA06 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AA06 Gene

Localization for AA06 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for AA06 Gene

Pathways & Interactions for AA06 Gene

SuperPathways for AA06 Gene

No Data Available

Interacting Proteins for AA06 Gene

Gene Ontology (GO) - Biological Process for AA06 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AA06 Gene

Transcripts for AA06 Gene

mRNA/cDNA for AA06 Gene

(5) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AA06 Gene

Uncharacterized LOC100506677:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for AA06 Gene

No ASD Table

Relevant External Links for AA06 Gene

GeneLoc Exon Structure for
AA06

Expression for AA06 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for AA06 Gene

mRNA differential expression in normal tissues according to GTEx for AA06 Gene

This gene is overexpressed in Testis (x51.7).

SOURCE GeneReport for Unigene cluster for AA06 Gene:

Hs.652571
genes like me logo Genes that share expression patterns with AA06: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for AA06 Gene

Orthologs for AA06 Gene

Evolution for AA06 Gene

ENSEMBL:
Gene Tree for AA06 (if available)
TreeFam:
Gene Tree for AA06 (if available)

No data available for Orthologs for AA06 Gene

Paralogs for AA06 Gene

No data available for Paralogs for AA06 Gene

Variants for AA06 Gene

Sequence variations from dbSNP and Humsavar for AA06 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs10514851 -- 33,533,797(+) ATTCC(A/G)AGATC intron-variant, upstream-variant-2KB
rs1054937 -- 33,529,963(-) AAATG(G/T)CTTAT intron-variant, nc-transcript-variant
rs111730114 -- 33,535,523(+) TGCCC(A/G)TCTCG intron-variant, upstream-variant-2KB
rs112696796 -- 33,535,559(+) GCGTG(A/G)GCCAC intron-variant, upstream-variant-2KB
rs113181479 -- 33,534,441(+) CATTT(C/T)TAAAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for AA06 Gene

Variant ID Type Subtype PubMed ID
nsv510706 CNV deletion 20534489
nsv521841 CNV loss 19592680
nsv833421 CNV gain 17160897
nsv9539 CNV loss 18304495

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for AA06 Gene

Disorders for AA06 Gene

Relevant External Links for AA06

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AA06

No disorders were found for AA06 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AA06 Gene

Publications for AA06 Gene

  1. Localization of the 17q breakpoint of a constitutional 1;17 translocation in a patient with neuroblastoma within a 25-kb segment located between the ACCN1 and TLK2 genes and near the distal breakpoints of two microdeletions in neurofibromatosis type 1 patients. (PMID: 12203774) Van Roy N. … Speleman F. (Genes Chromosomes Cancer 2002) 3 64

Products for AA06 Gene

Sources for AA06 Gene

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