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A4GNT Gene

protein-coding GIFtS: 44

GC03M139325

alpha-1,4-N-acetylglucosaminyltransferase
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases
Alpha4GnT ^³
EC 2.4.1.- ^³
MGC149493 ^²
alpha-1,4-N-acetylglucosaminyltransferase ^²
alpha4GnT ^¹, ²

External Ids
HGNC: 17968¹
Entrez Gene: 51146²
UniProtKB: Q9UNA3³
Ensembl: ENSG00000118017⁷

Search outside databases for aliases for A4GNT gene

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for A4GNT:

This gene encodes a protein from the glycosyltransferase 32 family. The enzyme catalyzes the

transfer of N-acetylglucosamine (GlcNAc) to core 2 branched O-glycans. It forms a unique glycan,

GlcNAcalpha1-->4Galbeta-->R and is largely associated with the Golgi apparatus membrane.

[provided by RefSeq]

UniProtKB/Swiss-Prot: A4GCT_HUMAN, Q9UNA3

Function: Necessary for the synthesis of type III mucin. Catalyzes the transfer of

N-acetylglucosamine (GlcNAc) to core 2 branched O-glycans

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the A4GNT gene

Entrez Gene cytogenetic band: 3p14.3 Ensembl cytogenetic band: 3q22.3 HGNC cytogenetic band: 3p14.3

A4GNT Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure

GeneLoc location for GC03M139325: (about GC identifiers)

Start:	139,325,252 bp from pter
End:	139,333,919 bp from pter
Size:	8,668 bases
Orientation:	minus strand

RefSeq DNA sequence:

NC_000003.10 NT_005612.15

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: A4GCT_HUMAN, Q9UNA3 (See protein sequence)

Recommended Name: Alpha-1,4-N-acetylglucosaminyltransferase

Size: 340 amino acids; 39497 Da

Subcellular location: Golgi apparatus membrane; Single-pass type II membrane protein (Probable)

Secondary accessions: Q0VDK1 Q0VDK2

REFSEQ proteins: NP_057245.1

ENSEMBL proteins:

ENSP00000236709

Human Recombinant Proteins

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	Recombinant Proteins from Abcam (A4GNT)
	Browse Abnova for Human Recombinant Proteins

Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

5/9 Gene Ontology (GO) cellular component terms (links to tree view) (see all 9 ):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000139	Golgi membrane	IEA	--
GO:0005624	membrane fraction	TAS	10430883
GO:0005634	nucleus	IDA	18029348
GO:0005730	nucleolus	IDA	18029348
GO:0005737	cytoplasm	IDA	18029348

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Antibodies for A4GNT:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Sigma-Aldrich Antibodies for A4GNT
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	Antibodies from Abcam (A4GNT), each with their Abpromise^SM
	Browse Abnova for Monoclonal and Polyclonal Antibodies
	Search Novus for antibodies for A4GNT

Assays for A4GNT:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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Graphical View of Domain Structure for InterPro Entry Q9UNA3

ProtoNet protein and cluster: Q9UNA3

1 Blocks protein family: IPB007652 Alpha 1,4-glycosyltransferase conserved region

UniProtKB/Swiss-Prot: A4GCT_HUMAN, Q9UNA3

Domain: The conserved DXD motif is involved in enzyme activity (By similarity)

Similarity: Belongs to the glycosyltransferase 32 family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (A4GNT)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_016161

Applied Biosystems Silencer® siRNAs for A4GNT

Sigma-Aldrich siRNA for A4GNT

Sigma-Aldrich shRNA for A4GNT

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Browse Clone Ranger at Invitrogen for clones
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_016161
Myc/DDK tagged cDNA clone in CMV expression vector: NM_016161
untagged cDNA clone in CMV expression vector: NM_016161

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_016161

UniProtKB/Swiss-Prot: A4GCT_HUMAN, Q9UNA3

Function: Necessary for the synthesis of type III mucin. Catalyzes the transfer of

N-acetylglucosamine (GlcNAc) to core 2 branched O-glycans

Enzyme Number (IUBMB): EC 2.4.1.-

3 Gene Ontology (GO) molecular function terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0008375	acetylglucosaminyltransferase activity	IDA	10430883
GO:0008378	galactosyltransferase activity	IEA	--
GO:0016757	transferase activity, transferring glycosyl groups	IEA	--

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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UniProtKB/Swiss-Prot: A4GCT_HUMAN, Q9UNA3

Pathway: Protein modification; protein glycosylation

2 Interacting proteins for A4GNT (ENSP00000236709³) via UniProtKB, MINT, and/or STRING

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
ABO	ENSP00000313515³	STRING (score=.72)
MUC6	ENSP00000371696³	STRING (score=.706)

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3 Gene Ontology (GO) biological process terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005975	carbohydrate metabolic process	TAS	10430883
GO:0006493	protein amino acid O-linked glycosylation	TAS	10430883
GO:0009101	glycoprotein biosynthetic process	IDA	10430883

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for A4GNT

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (A4GNT)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_016161

Sigma-Aldrich siRNA for A4GNT

Sigma-Aldrich shRNA for A4GNT

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_016161

REFSEQ mRNAs for A4GNT gene:

NM_016161.2

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_016161

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_016161
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_016161
                                 untagged cDNA clone in CMV expression vector: NM_016161

Additional cDNA sequence:

AF141315.1 AK225668.1 BC119639.1 BC119640.2

1 DOTS entry:

DT.91743826

7 AceView cDNA sequences:

NM_016161 BM769023 AF141315 BP343384 BX094798 AI344512 AW869791

highest scoring ESTs for A4GNT:

AF141315 BX094798 BM769023 BP343384 NM_016161 AI344512 AK225668 AW869791 BC119639 BC119640

Unigene Cluster for A4GNT:

Alpha-1,4-N-acetylglucosaminyltransferase

Hs.278960 [show with all ESTs]

Unigene Representative Sequence: AK225668

GeneLoc Exon Structure

1 Ensembl transcript including schematic representation:

ENST00000236709

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
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A4GNT expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for A4GNT

¹ / ² / ³

2 probe-sets matching A4GNT gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
221131_at²^{, 3}	U133-A	1	1.00	1.00	--	--	NM_016161	0.60	1.00	0.82	1
221131_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

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Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: AACCAGGAGG

SOURCE GeneReport for Unigene cluster: Hs.278960
UniProtKB/Swiss-Prot: A4GCT_HUMAN, Q9UNA3
Tissue specificity: Detected in stomach and pancreas

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for A4GNT gene from 5/7 species (see all 7 )

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	A4GNT¹	--	alpha-1,4-N-acetylglucosaminyltransferase	83.93(n) 80.36(a)	485683 XM_542803.2 XP_542803.2
chimpanzee (Pan troglodytes)	A4GNT¹	--	alpha-1,4-N-acetylglucosaminyltransferase	98.43(n) 98.53(a)	460724 XM_516775.2 XP_516775.2
cow (Bos taurus)	A4GNT¹	--	alpha-1,4-N-acetylglucosaminyltransferase	83.82(n) 81.18(a)	540795 XM_613170.2 XP_613170.1
rat (Rattus norvegicus)	A4gnt¹	--	alpha-1,4-N-acetylglucosaminyltransferase	78.63(n) 73.82(a)	685758 XM_001065156.1 XP_001065156.1
mouse (Mus musculus)	A4gnt^{1, 5}	9⁵	alpha-1,4-N-acetylglucosaminyltransferase^{1, 5}	77.25(n)¹ 71.18(a)¹	333424¹ NM_001077424.1¹ NP_001070892.1¹ AK136425⁵ AV080780⁵ (see all 7)

About this table Species with no ortholog for A4GNT

ENSEMBL Gene Tree for A4GNT

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for A4GNT gene

A4GALT²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/33 NCBI SNPs in A4GNT are shown (see all 33 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 34)

AB	SNP ID	Valid	Chr 3 pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
	rs2724692^1,2	A,C,F,H,O	139333888(+)	`GCAAAC/TGCAGT`	1	--	ut5¹ ese³		11		NA EU EA WA	978
	rs2246945^1,2	A,C,F,H	139326166(-)	`TTCAGA/CCATTT`	1	A/D	mis¹ ese³		9		EA EU WA	2314
	rs1564496^1,2	A,C	139325708(-)	`CTTGGC/GGGGGT`	1	--	ut3¹		0	--	--	--	--
	rs7615246^1,2	H	139333859(+)	`AACAGT/GGAATC`	1	--	ut5¹ ese³		4		EU EA WA	418
	rs2170309^1,2	A,C,F,H,O	139325796(-)	`AAATAG/AAGCTA`	1	X/X	syn¹		5		EA EU WA	1902
	rs2724691^1,2	A,C,F,H	139332693(+)	`GGCAAA/GCAGAA`	1	C/C	syn¹		5		EU EA WA NA	462
	rs2622695^1,2	A,C,F,H	139327335(-)	`ACAGAT/CCTGAG`	1	--	int¹		4		EU EA WA	418
	rs2622694^1,2	A,C,F,H	139331559(+)	`TCACTT/CCTAAT`	1	--	int¹		4		EU EA WA	418
	rs2622696^1,2	A,C,H	139331604(+)	`TTGTAG/TAGTTC`	1	--	int¹		3		EU EA	256
--	rs2724690^1,2	A,C	139331399(+)	`tccagC/Tgatcc`	1	--	int¹		0	--	--	--	--

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HapMap Linkage Disequilibrium images for A4GNT (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

(Possibly Related Articles in Doctor's Guide)
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(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

10 PubMed articles for A4GNT gene:

Expression cloning of a human alpha1, 4-N- acetylglucosaminyltransferase that forms GlcNAcalpha1-->4Galbeta-->R, a glycan specifically expressed in the gastric gland mucous cell-type mucin. (PubMed id 10430883)^{1, 2, 3, 4} Nakayama J.... Fukuda M. (1999)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
Immunohistochemical demonstration of alpha1,4-N-acetylglucosaminyltransferase that forms GlcNAcalpha1,4Galbeta residues in human gastrointestinal mucosa. (PubMed id 11304796)^{1, 3} Zhang M.X....Fukuda M. (2001)
Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)³ Barbe L....Andersson-Svahn H. (2008)
Clinical utility of quantitative RT-PCR targeted to alpha1,4-N-acetylglucosaminyltransferase mRNA for detection of pancreatic cancer. (PubMed id 16441422)³ Ishizone S....Nakayama J. (2006)
Usefulness of the real-time reverse transcription-polymerase chain reaction assay targeted to alpha1,4-N-acetylglucosaminyltransferase for the detection of gastric cancer. (PubMed id 12594234)³ Shimizu F....Katsuyama T. (2003)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)³ Strausberg R.L....Marra M.A. (2002)
Construction and characterization of a full length-enriched and a 5'- end-enriched cDNA library. (PubMed id 9373149)³ Suzuki Y.... Sugano S. (1997)
Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. (PubMed id 8125298)³ Maruyama K. and Sugano S. (1994)
Helicobacter pylori infection up-regulates gland mucous cell-type mucins in gastric pyloric mucosa. (PubMed id 14632674)¹ Matsuzwa M....Nakayama J. (2003)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
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Entrez Gene: 51146	HGNC: 17968	AceView: A4GNT	Ensembl:ENSG00000118017	euGenes: HUgn51146
ECgene: A4GNT	H-InvDB: A4GNT

(According to HUGE)
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(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Name	Description
GGDB	http://riodb.ibase.aist.go.jp/rcmg/ggdb/
Functional Glycomics Gateway - GTase	http://www.functionalglycomics.org/glycomics/molecule/jsp/glycoEnzyme/viewGlycoEnzyme.jsp?gbpId=gt_hum_532

Licensable Technologies for A4GNT
(Available from WIS Yeda, Salk, Tufts)

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(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
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Products for A4GNT:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for A4GNT-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
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A4GNT Gene

protein-coding GIFtS: 44

Aliases &
Descriptions
for A4GNT

Summaries
for A4GNT

Genomic Location
for A4GNT

Proteins
for A4GNT

Protein Domains/
Families
for A4GNT

Gene Function
for A4GNT

Pathways & Interactions
for A4GNT

Drugs & Compounds
for A4GNT

Transcripts
for A4GNT

Expression
for A4GNT

Orthologs
for A4GNT

Paralogs
for A4GNT

SNPs/Variants
for A4GNT

Disorders & Mutations
for A4GNT

Medical News
for A4GNT

Publications
for A4GNT

Search for A4GNT

Genome Databases showing A4GNT

Other Databases showing A4GNT

Specialized Databases showing A4GNT

Licensable Technologies
for A4GNT

Services
for A4GNT

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

A4GNT Gene

protein-coding GIFtS: 44

Aliases & Descriptionsfor A4GNT

Summariesfor A4GNT

Genomic Locationfor A4GNT

Proteinsfor A4GNT

Protein Domains/Familiesfor A4GNT

Gene Functionfor A4GNT

Pathways & Interactionsfor A4GNT

Drugs & Compoundsfor A4GNT

Transcriptsfor A4GNT

Expression for A4GNT

Orthologsfor A4GNT

Paralogsfor A4GNT

SNPs/Variantsfor A4GNT

Disorders & Mutationsfor A4GNT

Medical Newsfor A4GNT

Publicationsfor A4GNT

Search for A4GNT

Genome Databases showing A4GNT

Other Databases showing A4GNT

Specialized Databases showing A4GNT

Licensable Technologiesfor A4GNT

Servicesfor A4GNT

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for A4GNT

Summaries
for A4GNT

Genomic Location
for A4GNT

Proteins
for A4GNT

Protein Domains/
Families
for A4GNT

Gene Function
for A4GNT

Pathways & Interactions
for A4GNT

Drugs & Compounds
for A4GNT

Transcripts
for A4GNT

Expression
for A4GNT

Orthologs
for A4GNT

Paralogs
for A4GNT

SNPs/Variants
for A4GNT

Disorders & Mutations
for A4GNT

Medical News
for A4GNT

Publications
for A4GNT

Licensable Technologies
for A4GNT

Services
for A4GNT