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Aliases for A2M-AS1 Gene

Subcategory (RNA class) for A2M-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for A2M-AS1 Gene

  • A2M Antisense RNA 1 (Head To Head) 2 3 5
  • A2M Antisense RNA 1 (Non-Protein Coding) 2
  • A2M Antisense RNA 1 2

External Ids for A2M-AS1 Gene

Previous GeneCards Identifiers for A2M-AS1 Gene

  • GC12P009218

Summaries for A2M-AS1 Gene

GeneCards Summary for A2M-AS1 Gene

A2M-AS1 (A2M Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for A2M-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for A2M-AS1 Gene

Genomics for A2M-AS1 Gene

Regulatory Elements for A2M-AS1 Gene

Enhancers for A2M-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H009063 1 ENCODE 12.1 -0.4 -426 2 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 GLIS2 PAF1 SP5 REST A2M A2M-AS1 KRT17P8 BTG1P1 LINC00612 VDAC2P2
GH12H009072 0.6 ENCODE 12.7 +8.0 7985 1 PAF1 FOXA2 MAX RAD21 YY1 SSRP1 JUND POLR2A ATF3 HNF4A A2M-AS1 A2M GC12M009066
GH12H008695 1 ENCODE 5.3 -366.9 -366896 4 PKNOX1 ATF1 ARNT SIN3A GLI4 ZNF2 BRCA1 GLIS2 KLF7 SP3 RIMKLB A2M-AS1 RPSAP51
GH12H009110 0.5 FANTOM5 6.2 +45.6 45551 0 CEBPA HLF A2M-AS1 KLRG1 KLRB1 A2M GC12M009066
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around A2M-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for A2M-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000048582 -377 1601 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 GLIS2 PAF1 SP5 REST

Genomic Location for A2M-AS1 Gene

Chromosome:
12
Start:
9,065,177 bp from pter
End:
9,068,060 bp from pter
Size:
2,884 bases
Orientation:
Plus strand

Genomic View for A2M-AS1 Gene

Genes around A2M-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
A2M-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for A2M-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for A2M-AS1 Gene

Proteins for A2M-AS1 Gene

Post-translational modifications for A2M-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for A2M-AS1 Gene

Domains & Families for A2M-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for A2M-AS1 Gene

Function for A2M-AS1 Gene

Phenotypes From GWAS Catalog for A2M-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for A2M-AS1 Gene

Localization for A2M-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for A2M-AS1 Gene

Pathways & Interactions for A2M-AS1 Gene

SuperPathways for A2M-AS1 Gene

No Data Available

Interacting Proteins for A2M-AS1 Gene

Gene Ontology (GO) - Biological Process for A2M-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for A2M-AS1 Gene

Drugs & Compounds for A2M-AS1 Gene

No Compound Related Data Available

Transcripts for A2M-AS1 Gene

mRNA/cDNA for A2M-AS1 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for A2M-AS1 Gene

A2M antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for A2M-AS1 Gene

No ASD Table

Relevant External Links for A2M-AS1 Gene

GeneLoc Exon Structure for
A2M-AS1
ECgene alternative splicing isoforms for
A2M-AS1

Expression for A2M-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for A2M-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for A2M-AS1 Gene

This gene is overexpressed in Liver (x5.3) and Lung (x5.1).

SOURCE GeneReport for Unigene cluster for A2M-AS1 Gene:

Hs.592432
genes like me logo Genes that share expression patterns with A2M-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for A2M-AS1 Gene

Orthologs for A2M-AS1 Gene

Evolution for A2M-AS1 Gene

ENSEMBL:
Gene Tree for A2M-AS1 (if available)
TreeFam:
Gene Tree for A2M-AS1 (if available)

No data available for Orthologs for A2M-AS1 Gene

Paralogs for A2M-AS1 Gene

No data available for Paralogs for A2M-AS1 Gene

Variants for A2M-AS1 Gene

Sequence variations from dbSNP and Humsavar for A2M-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000212841 -- 9,066,247(+) AGCTC(C/T)GGCCC intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1000476709 -- 9,066,387(+) AAGCT(C/G)TTTGT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1000477784 -- 9,067,649(+) ATTCT(-/A)TTGGG intron-variant, nc-transcript-variant, downstream-variant-500B
rs1001617861 -- 9,066,975(+) TGTCG(C/T)AATAC intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1001751772 -- 9,066,265(+) AGCCC(A/G)GACCT intron-variant, nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for A2M-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1051530 CNV gain 25217958
nsv832327 CNV loss 17160897

Relevant External Links for A2M-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
A2M-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for A2M-AS1 Gene

Disorders for A2M-AS1 Gene

Relevant External Links for A2M-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
A2M-AS1

No disorders were found for A2M-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for A2M-AS1 Gene

Publications for A2M-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for A2M-AS1 Gene

Sources for A2M-AS1 Gene

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