Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

A1CF Gene

protein-coding   GIFtS: 52
GCID: GC10M052566

APOBEC1 complementation factor

 Explore 6 diseases affiliated with
A1CF via our new
 Human Malady Compendium 
Biological research products
for A1CF
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
APOBEC1 Complementation Factor1 2     APOBEC1CF1 2
ACF1 2 3     Apo-B RNA Editing Protein2
ASP1 2 3     Apobec-1 Complementation Factor (ACF) (ASP)2
ACF641 2     APOBEC-1 Stimulating Protein2
ACF651 2     APOBEC1-Stimulating Protein3

External Ids:    HGNC: 240861   Entrez Gene: 299742   Ensembl: ENSG000001485847   UniProtKB: Q9NQ943   

Export aliases for A1CF gene to outside databases

Previous GC identifers: GC10M052237 GC10M046544


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for A1CF:
Mammalian apolipoprotein B mRNA undergoes site-specific C to U deamination, which is mediated by a multi-component
enzyme complex containing a minimal core composed of APOBEC-1 and a complementation factor encoded by this gene. The
gene product has three non-identical RNA recognition motifs and belongs to the hnRNP R family of RNA-binding proteins.
It has been proposed that this complementation factor functions as an RNA-binding subunit and docks APOBEC-1 to
deaminate the upstream cytidine. Studies suggest that the protein may also be involved in other RNA editing or RNA
processing events. Several transcript variants encoding a few different isoforms have been found for this gene.
(provided by RefSeq, Nov 2010)

UniProtKB/Swiss-Prot: A1CF_HUMAN, Q9NQ94
Function: Essential component of the apolipoprotein B mRNA editing enzyme complex which is responsible for the
postranscriptional editing of a CAA codon for Gln to a UAA codon for stop in APOB mRNA. Binds to APOB mRNA and is
probably responsible for docking the catalytic subunit, APOBEC1, to the mRNA to allow it to deaminate its target
cytosine. The complex also protects the edited APOB mRNA from nonsense-mediated decay

Gene Wiki entry for A1CF (ACF)


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000010.10  NC_018921.1  NT_030059.13  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the A1CF gene promoter:
         Arnt   RORalpha2   RORalpha1   POU2F1   POU2F1b   POU2F1a   STAT3   FOXO1a   POU2F1c   FOXO1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidA1CF promoter sequence
   Search SABiosciences Chromatin IP Primers for A1CF

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat A1CF


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 10q11.23   Ensembl cytogenetic band:  10q11.23   HGNC cytogenetic band: 10q21.1

A1CF Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
A1CF gene location

GeneLoc information about chromosome 10         GeneLoc Exon Structure

GeneLoc location for GC10M052566:  view genomic region     (about GC identifiers)

Start:
52,566,322 bp from pter      End:
52,645,435 bp from pter
Size:
79,114 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: A1CF_HUMAN, Q9NQ94 (See protein sequence)
Recommended Name: APOBEC1 complementation factor  
Size: 594 amino acids; 65202 Da
Subunit: Part of the apolipoprotein B mRNA editing complex with APOBEC1. Interacts with TNPO2; TNPO2 may be responsible
for transport of A1CF into the nucleus. Interacts with SYNCRIP. Interacts with CELF2/CUGBP2 (By similarity)
Subcellular location: Nucleus. Endoplasmic reticulum (By similarity). Cytoplasm. Note=Predominantly nuclear where it
localizes to heterochromatin. Also cytoplasmic where it is found at the outer surface of the endoplasmic reticulum (By
similarity). Shuttles between the nucleus and cytoplasm. May be transported into the nucleus by the nuclear import
protein TNPO2/TRN2 or by APOBEC1
Sequence caution: Sequence=BAA91086.1; Type=Frameshift; Positions=148;
1 PDB 3D structure from and Proteopedia for A1CF:
2CPD (3D)    
Secondary accessions: A1L4F2 A8K7G7 B7ZM14 Q5SZQ0 Q9NQ93 Q9NQX8 Q9NQX9 Q9NXC9 Q9NZD3
Alternative splicing: 6 isoforms:  Q9NQ94-1   Q9NQ94-2   Q9NQ94-3   Q9NQ94-4   Q9NQ94-5   Q9NQ94-6   (Minor isoform found in 2-3% of cDNA clones)

Explore the universe of human proteins at neXtProt for A1CF: NX_Q9NQ94

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9NQ94

  • A1CF Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (6 alternative transcripts): 
    NP_001185747.1  NP_001185748.1  NP_001185749.1  NP_055391.2  NP_620310.1  NP_620311.1  

    ENSEMBL proteins: 
     ENSP00000363113   ENSP00000363105   ENSP00000363109   ENSP00000363107   ENSP00000397953  
     ENSP00000282641   ENSP00000378873   ENSP00000378868  
    Reactome Protein details: Q9NQ94
    Human Recombinant Protein Products: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    OriGene Purified Proteins (see all 2): A1CF
    OriGene Protein Over-expression Lysate (see all 3): A1CF
    OriGene Custom Protein Services for A1CF 
    GenScript Custom Purified and Recombinant Proteins Services for A1CF
    Novus Biologicals A1CF Lysates
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for A1CF

    Gene Ontology (GO): 5/6 cellular component terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ----
    GO:0005654nucleoplasm TAS--
    GO:0005720nuclear heterochromatin ----
    GO:0005737cytoplasm IDA--
    GO:0005783endoplasmic reticulum IEA--


    A1CF for ontologies           About GeneDecksing



    A1CF Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse R&D Systems for Antibodies
    Browse OriGene Antibodies
    OriGene Custom Antibody Services for A1CF 
    GenScript Custom Superior Antibodies Services for A1CF
    Novus Biologicals A1CF Antibodies
    Search for Antibodies for A1CF at Abcam  
    Uscn Antibodies for A1CF
    ThermoFisher Antibody for A1CF

    Assay Products for A1CF: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for A1CF
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for A1CF


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    A1CF for domains           About GeneDecksing

    4 InterPro domains/families:
     IPR006535 HnRNP_R/Q_splicing_fac
     IPR000504 RRM_dom
     IPR014720 dsRNA-bd-like_dom
     IPR012677 Nucleotide-bd_a/b_plait

    Graphical View of Domain Structure for InterPro Entry Q9NQ94

    ProtoNet protein and cluster: Q9NQ94

    1 Blocks protein family: IPB000504 RNA-binding region RNP-1 (RNA recognition motif)

    UniProtKB/Swiss-Prot: A1CF_HUMAN, Q9NQ94
    Domain: The RRM domains are necessary but not sufficient for binding to APOB mRNA. Additional residues in the pre-RRM
    and C-terminal regions are required for RNA-binding and for complementing APOBEC1 activity
    Similarity: Contains 3 RRM (RNA recognition motif) domains


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: A1CF_HUMAN, Q9NQ94
    Function: Essential component of the apolipoprotein B mRNA editing enzyme complex which is responsible for the
    postranscriptional editing of a CAA codon for Gln to a UAA codon for stop in APOB mRNA. Binds to APOB mRNA and is
    probably responsible for docking the catalytic subunit, APOBEC1, to the mRNA to allow it to deaminate its target
    cytosine. The complex also protects the edited APOB mRNA from nonsense-mediated decay

    miRNA
    Products:
        
    Browse 3'-UTR reporter clones for miRNA target validation
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat A1CF
    8/90 QIAGEN miScript miRNA Assays for microRNAs that regulate A1CF (see all 90):
    hsa-miR-520e hsa-miR-520f hsa-miR-106a hsa-miR-15a hsa-miR-30d hsa-miR-519a hsa-miR-502-3p hsa-miR-30a
    SwitchGear 3'UTR luciferase reporter plasmidA1CF 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for A1CF (see all 4)
    OriGene shRNA RFP: A1CF
    OriGene siRNA: A1CF
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat A1CF

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for A1CF

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for A1CF (see all 6)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for A1CF (see all 3)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 6): A1CF (NM_138932)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for A1CF
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat A1CF 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for A1CF
    Search LifeMap BioReagents cell lines for A1CF

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for A1CF

    Gene Ontology (GO): 5/7 molecular function terms (GO ID links to tree view) (see all 7):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000166nucleotide binding IEA--
    GO:0003723RNA binding TAS10669759
    GO:0003725NOT double-stranded RNA binding IDA11871661
    GO:0003727single-stranded RNA binding IDA11871661
    GO:0003729mRNA binding ----


    A1CF for ontologies           About GeneDecksing


    Animal Models:
         2 MGI mutant phenotypes (inferred from 1 allele(MGI details for A1cf):
     cellular  mortality/aging 

    A1CF for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Formation of editosomes by ADAR proteins
    mRNA Editing0.50
    Formation of the Editosome0.00
    mRNA Editing: C to U Conversion0.00
    2mRNA Splicing - Major Pathway
    mRNA Processing0.82
    3Generic Transcription Pathway
    Gene Expression0.46

    Pathway sources
    See GeneCards unified pathways
    Show all pathways


    5        Reactome Pathways for A1CF
        Formation of the Editosome
    mRNA Editing
    Gene Expression
    mRNA Editing: C to U Conversion
    mRNA Processing



    A1CF for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for A1CF

    STRING Interaction Network Preview (showing 5 interactants - click image to see 9)

    5/10 Interacting proteins for A1CF (Q9NQ943 ENSP000002826414) via UniProtKB, MINT, STRING, and/or I2D (see all 10)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    APOBEC1P412383, ENSP000002293044I2D: score=2 STRING: ENSP00000229304
    CELF2O953193, ENSP000003899514I2D: score=2 STRING: ENSP00000389951
    SYNCRIPO605063, ENSP000003586354I2D: score=2 STRING: ENSP00000358635
    KHSRPQ929453, ENSP000003812164I2D: score=2 STRING: ENSP00000381216
    TNPO2O147873, ENSP000003973794I2D: score=2 STRING: ENSP00000397379
    About this table

    Gene Ontology (GO): 5 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006397mRNA processing IEA--
    GO:0010467gene expression TAS--
    GO:0016554cytidine to uridine editing TAS--
    GO:0016556mRNA modification TAS--
    GO:0050821protein stabilization IDA12881431


    A1CF for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    A1CF for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for A1CF

    1 HMDB Compound for A1CF    About this table
    CompoundSynonyms CAS #PubMed Ids
    Cytosine4-Amino-2(1H)-pyrimidinone (see all 6)71-30-7--
    4 Novoseek chemical compound relationships for A1CF gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    cytidine 82.4 6 12881431 (1), 16055734 (1), 10669759 (1), 15451168 (1) (see all 6)
    uridine 62.9 1 11870221 (1)
    ethanol 25.2 2 16820530 (2)
    serine 13.8 1 16820530 (1)

    Search CenterWatch for drugs/clinical trials and news about A1CF 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for A1CF gene (6 alternative transcripts): 
    NM_001198818.1  NM_001198819.1  NM_001198820.1  NM_014576.3  NM_138932.2  NM_138933.2  

    Unigene Cluster for A1CF:

    APOBEC1 complementation factor
    Hs.282795  [show with all ESTs]
    Unigene Representative Sequence: NM_001198819
    10 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000374001 ENST00000373993 ENST00000373997(uc009xov.3 uc001jji.3)
    ENST00000373995(uc010qhn.2 uc001jjh.3) ENST00000493415 ENST00000473480
    ENST00000414883(uc001jjk.1) ENST00000282641(uc001jjj.3) ENST00000395495
    ENST00000395489(uc010qho.2)

    miRNA
    Products:
         
    Browse 3'-UTR reporter clones for miRNA target validation
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat A1CF
    8/90 QIAGEN miScript miRNA Assays for microRNAs that regulate A1CF (see all 90):
    hsa-miR-520e hsa-miR-520f hsa-miR-106a hsa-miR-15a hsa-miR-30d hsa-miR-519a hsa-miR-502-3p hsa-miR-30a
    SwitchGear 3'UTR luciferase reporter plasmidA1CF 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for A1CF (see all 4)
    OriGene shRNA RFP: A1CF
    OriGene siRNA: A1CF
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat A1CF
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for A1CF (see all 6)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for A1CF (see all 3)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 6): A1CF (NM_138932)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for A1CF
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat A1CF 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for A1CF
    Browse OriGene validated miRNA SYBR primer pairs
    Search SABiosciences RT2 qPCR Primer Assays in human, mouse, rat A1CF
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat A1CF
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat A1CF

    Additional cDNA sequence: 

    AF209192.1 AF271789.1 AF271790.1 AJ272078.1 AJ272079.1 AK000324.1 AK130022.1 AK291982.1 
    AK303801.1 BC022263.1 BC054873.1 BC130519.1 BC144194.1 BC144196.1 CR749831.1 

    11 DOTS entries:

    DT.101966638  DT.92425892  DT.95374373  DT.100022638  DT.86841758  DT.100765861  DT.99940798  DT.95374372 
    DT.95374374  DT.95325400  DT.92425886 

    24/110 AceView cDNA sequences (see all 110):

    CK825749 BF431668 CK825748 T39997 BC054873 NM_014576 CA942922 NM_138932 
    BG617808 T78557 CA942681 AJ272078 BM479119 AJ272079 AI913746 AF271789 
    NM_138933 T78476 BX101891 AV684607 AV660671 N77737 AW610448 BG618487 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for A1CF    About this scheme

    ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14
    SP1:        -                                   -           -                       -                     
    SP2:                          -                 -           -                       -                     
    SP3:                          -                 -           -                                             
    SP4:                                                                                                      
    SP5:        -                 -                                                                           


    ECgene alternative splicing isoforms for A1CF

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    A1CF expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: --

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    A1CF expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    Stem Cell Differentiation: 1 LifeMap Cell 
    NameCategory
    Endoderm progenitor-like cells (Generation and expan...)
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See A1CF Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for A1CF

    SOURCE GeneReport for Unigene cluster: Hs.282795

    UniProtKB/Swiss-Prot: A1CF_HUMAN, Q9NQ94
    Tissue specificity: Widely expressed with highest levels in brain, liver, pancreas, colon and spleen

        SABiosciences Custom PCR Arrays for A1CF
    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for A1CF
    Browse OriGene validated miRNA SYBR primer pairs
    Search SABiosciences RT2 qPCR Primer Assays in human, mouse, rat A1CF
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat A1CF
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat A1CF
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for A1CF

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for A1CF gene from 6/20 species (see all 20)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves A1CF1 APOBEC1 complementation factor 79.31(n)
    88.97(a)
      423680  XM_003641458.1  XP_003641506.1 
    lizard
    (Anolis carolinensis)
    Reptilia A1CF6
    --
    80(a)
    1 ↔ 1
    GL343246.1(1350881-1383168)
    zebrafish
    (Danio rerio)
    Actinopterygii a1cf1 apobec1 complementation factor 74.31(n)
    82.07(a)
      562916  XM_680086.4  XP_685178.1 
    honey bee
    (Apis mellifera)
    Insecta --
    --
    35(a)
    1 → many
    Group2.12(581162-583785)
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT4G008306
    AT3G526606
    (see all 4)
    RNA recognition motif-containing protein
    (see all 4)
    22(a)
    21(a)
    (see all 4)
    many ↔ many
    many ↔ many
    (see all 4)
    4(352016-355233)
    3(19521660-19524953)
    rice
    (Oryza sativa)
    Liliopsida --
    --
    (see all 8)
    RNA recognition motif containing protein, expresse...
    APOBEC1 complementation factor, putative, expresse...
    (see all 8)
    25(a)
    24(a)
    (see all 8)
    many ↔ many
    many ↔ many
    (see all 8)
    10(3112799-3117851)
    11(8096480-8101158)


    ENSEMBL Gene Tree for A1CF (if available)
    TreeFam Gene Tree for A1CF (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for A1CF gene
    RBM472  SYNCRIP2  DND12  RBM462  HNRNPR2  
    13 SIMAP similar genes for A1CF using alignment to 4 protein entries:     A1CF_HUMAN (see all proteins):
    RBM47    RBM46    HNRPR    DKFZp686A13234    SYNCRIP    HNRNPR
    DKFZp686C17209    DKFZp781C0423    DKFZp781I1140    DND1    RBM39    RBMY1A1
    CELF1

    A1CF for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1343 NCBI SNPs in A1CF are shown (see all 1343    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 10 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs122629671,2
    C,F,H,--46537314(+) TTTTAA/GCTCAA 6 -- ds500113Minor allele frequency- G:0.07NS EA NA WA 1394
    rs749680371,2
    C,F,--46537346(+) CTGGAT/CTTGGT 6 -- ds50011Minor allele frequency- C:0.09WA 118
    rs1124290401,2
    C--46537709(+) TATAAA/C/TGGCAC 12 -- ut311CSA 1
    rs618565701,2
    --46537807(+) TGCCCG/ATTATG 6 -- ut311Minor allele frequency- A:0.50NA 2
    rs109945181,2
    F,--46538910(+) TCTCTG/AAAGAA 6 -- ut311Minor allele frequency- A:0.05WA 118
    rs109945211,2
    C,F,H,--46539174(+) GAAGGA/TAAAAA 6 -- ut316Minor allele frequency- T:0.04NS EA WA 540
    rs122594251,2
    C,F,--46539671(+) TGGGGT/AGTGTG 6 -- ut312Minor allele frequency- A:0.50WA 4
    rs758429051,2
    --46540140(+) AGAGTA/CCAAGG 6 -- ut311Minor allele frequency- C:0.01WA 118
    rs590305241,2
    F,--46540159(+) TAGCTT/CTCCTA 6 -- ut311Minor allele frequency- C:0.03WA 118
    rs2003098421,2
    C--46540959(+) CTTAGA/TGNNNN 6 -- ut310--------

    HapMap Linkage Disequilibrium report for A1CF (52566322 - 52645435 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for A1CF: --

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing A1CF
    DNA2.0 Custom Variant and Variant Library Synthesis for A1CF

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    A1CF for disorders           About GeneDecksing

    6 diseases for A1CF:    About MalaCards
    anisometropia    hydrocele    amblyopia    cholera
    hepatocellular carcinoma    carcinoma

    2 diseases from the University of Copenhagen DISEASES database for A1CF:
    Amblyopia     Anisometropia

    Export disorders for A1CF gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for A1CF gene, integrated from 9 sources (see all 30):
    (articles sorted by number of sources associating them with A1CF)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. A novel nuclear localization signal in the auxiliary domain of apobec-1 complementation factor regulates nucleocytoplasmic import and shuttling. (PubMed id 12896982)1, 2, 9 Blanc V.... Davidson N.O. (2003)
    2. Molecular cloning of APOBEC-1 complementation factor, a novel RNA- binding protein involved in the editing of apolipoprotein B mRNA. (PubMed id 10669759)1, 2, 9 Mehta A.... Driscoll D.M. (2000)
    3. Two proteins essential for apolipoprotein B mRNA editing are expressed from a single gene through alternative splicing. (PubMed id 11815617)1, 3, 9 Dance G.S....Smith H.C. (2002)
    4. Isolation, characterization and developmental regulation of the human apobec-1 complementation factor (ACF) gene. (PubMed id 11718896)1, 2, 9 Henderson J.O.... Davidson N.O. (2001)
    5. Identification of domains in apobec-1 complementation factor required for RNA binding and apolipoprotein-B mRNA editing. (PubMed id 11871661)1, 2, 9 Mehta A. and Driscoll D.M. (2002)
    6. The apolipoprotein B mRNA editing complex performs a multifunctional cycle and suppresses nonsense-mediated decay. (PubMed id 12881431)1, 2, 9 Chester A.... Navaratnam N. (2003)
    7. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    8. The DNA sequence and comparative analysis of human chromosome 10. (PubMed id 15164054)1, 2 Deloukas P.... Rogers J. (2004)
    9. Identification of GRY-RBP as an apolipoprotein B RNA-binding protein that interacts with both apobec-1 and apobec-1 complementation factor to modulate C to U editing. (PubMed id 11134005)1, 2 Blanc V.... Davidson N.O. (2001)
    10. Purification and molecular cloning of a novel essential component of the apolipoprotein B mRNA editing enzyme-complex. (PubMed id 10781591)1, 2 Lellek H.... Greeve J. (2000)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 29974 HGNC: 24086 AceView: ACF Ensembl:ENSG00000148584 euGenes: HUgn29974
    ECgene: A1CF H-InvDB: A1CF

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for A1CF Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for A1CF gene:
    Search GeneIP for patents involving A1CF

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Browse Antibodies   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     Browse OriGene Antibodies   OriGene shRNA RFP for A1CF  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for A1CF   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for A1CF  
     OriGene Protein Over-expression Lysate for A1CF   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for A1CF   Browse 3'-UTR reporter clones for miRNA target validation  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for A1CF   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for A1CF  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     OriGene Purified Protein for A1CF   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for A1CF   OriGene Custom Protein Services for A1CF  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat A1CF
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing A1CF
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat A1CF
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat A1CF
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat A1CF
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat A1CF
     GenScript Custom Purified and Recombinant Proteins Services for A1CF GenScript cDNA clones with any tag delivered in your preferred vector for A1CF
     GenScript Custom Assay Services for A1CF GenScript Custom Superior Antibodies Services for A1CF
     GenScript Custom overexpressing Cell Line Services for A1CF CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in A1CF promoter
     Search Chromatin IP Primers for A1CF
     Search RT2 qPCR Primer Assays in human, mouse, rat A1CF
     Search GNC Networks for A1CF
     SABiosciences Custom PCR Arrays for A1CF
     Search Tocris compounds for A1CF
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     A1CF antibodies
     A1CF lysates
     Search for Antibodies for A1CF at Abcam
     See all of Abcam's Antibodies, Kits and Proteins for A1CF
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     A1CF Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for A1CF
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for A1CF
     SwitchGear 3'UTR luciferase reporter plasmids for A1CF
     SwitchGear Promoter luciferase reporter plasmids for A1CF
     ThermoFisher Antibody for A1CF
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat A1CF
           
    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      A1CF gene at Home site.
    hostname: 356980-web2.xennexinc.com index build: 100 solr: 1.4