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Aliases for A1BG-AS1 Gene

Subcategory (RNA class) for A1BG-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for A1BG-AS1 Gene

  • A1BG Antisense RNA 1 2 3 5
  • A1BG Antisense RNA 1 (Non-Protein Coding) 2 3
  • A1BG Antisense RNA (Non-Protein Coding) 2 3
  • Non-Protein Coding RNA 181 2
  • NCRNA00181 3
  • A1BG-AS 3
  • A1BGAS 3

External Ids for A1BG-AS1 Gene

Previous HGNC Symbols for A1BG-AS1 Gene

  • NCRNA00181
  • A1BGAS
  • A1BG-AS

Previous GeneCards Identifiers for A1BG-AS1 Gene

  • GC19P059058
  • GC19P059072
  • GC19P059085
  • GC19P059104
  • GC19P059146
  • GC19P059203
  • GC19P058860

Summaries for A1BG-AS1 Gene

GeneCards Summary for A1BG-AS1 Gene

A1BG-AS1 (A1BG Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for A1BG-AS1 Gene

Genomics for A1BG-AS1 Gene

Regulatory Elements for A1BG-AS1 Gene

Enhancers for A1BG-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G057487 1 ENCODE 3.9 -859.7 -859708 1.9 HDGF PKNOX1 ATF1 CREB3L1 WRNIP1 ARID4B SIN3A YBX1 ZNF48 YY1 ZNF419 VN1R1 ZNF773 ZNF550 ZNF544 A1BG-AS1 ENSG00000268107 GC19P057489
GH19G058346 1 ENCODE 0.7 -0.2 -222 1.6 HDGF PKNOX1 ATF1 CREB3L1 AGO1 SIN3A ZNF2 GLIS2 ZNF143 ZNF207 A1BG ZNF324 ZNF446 RNU6-1337P A1BG-AS1 PIR61497
GH19G058339 0.5 ENCODE 0.4 -8.4 -8412 0.1 CTCF PKNOX1 ZBTB33 ZBTB45 ZNF324B ZNF446 RNU6-1337P PIR61497 A1BG-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around A1BG-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for A1BG-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000111865 -151 1601 HDGF ATF1 CREB3L1 AGO1 SIN3A ZNF2 GLIS2 ZNF143 ZNF207 SP3

Genomic Location for A1BG-AS1 Gene

Chromosome:
19
Start:
58,347,751 bp from pter
End:
58,355,183 bp from pter
Size:
7,433 bases
Orientation:
Plus strand

Genomic View for A1BG-AS1 Gene

Genes around A1BG-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
A1BG-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for A1BG-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for A1BG-AS1 Gene

Proteins for A1BG-AS1 Gene

Post-translational modifications for A1BG-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for A1BG-AS1 Gene

Domains & Families for A1BG-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for A1BG-AS1 Gene

Function for A1BG-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for A1BG-AS1 Gene

Localization for A1BG-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for A1BG-AS1 Gene

Pathways & Interactions for A1BG-AS1 Gene

SuperPathways for A1BG-AS1 Gene

No Data Available

Interacting Proteins for A1BG-AS1 Gene

Gene Ontology (GO) - Biological Process for A1BG-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for A1BG-AS1 Gene

Drugs & Compounds for A1BG-AS1 Gene

No Compound Related Data Available

Transcripts for A1BG-AS1 Gene

mRNA/cDNA for A1BG-AS1 Gene

(6) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for A1BG-AS1 Gene

A1BG antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for A1BG-AS1 Gene

No ASD Table

Relevant External Links for A1BG-AS1 Gene

GeneLoc Exon Structure for
A1BG-AS1
ECgene alternative splicing isoforms for
A1BG-AS1

Expression for A1BG-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for A1BG-AS1 Gene

SOURCE GeneReport for Unigene cluster for A1BG-AS1 Gene:

Hs.709582
genes like me logo Genes that share expression patterns with A1BG-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for A1BG-AS1 Gene

Orthologs for A1BG-AS1 Gene

Evolution for A1BG-AS1 Gene

ENSEMBL:
Gene Tree for A1BG-AS1 (if available)
TreeFam:
Gene Tree for A1BG-AS1 (if available)

No data available for Orthologs for A1BG-AS1 Gene

Paralogs for A1BG-AS1 Gene

No data available for Paralogs for A1BG-AS1 Gene

Variants for A1BG-AS1 Gene

Sequence variations from dbSNP and Humsavar for A1BG-AS1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000277711 -- 58,351,766(+) CTCCG(A/G)GTGGC intron-variant, upstream-variant-2KB
rs1001334782 -- 58,353,284(+) CCCCT(C/G)CACTC intron-variant
rs1001651855 -- 58,350,697(+) TGGCT(C/T)GGCCC intron-variant, upstream-variant-2KB
rs1003820585 -- 58,354,663(+) GCATG(C/T)TCTCT nc-transcript-variant, upstream-variant-2KB, utr-variant-3-prime
rs1003942142 -- 58,351,733(+) AGCTG(C/T)CCTCT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for A1BG-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv515731 CNV gain+loss 19592680
nsv817878 CNV loss 17921354
nsv833887 CNV loss 17160897
nsv833888 CNV loss 17160897

Relevant External Links for A1BG-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
A1BG-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for A1BG-AS1 Gene

Disorders for A1BG-AS1 Gene

Relevant External Links for A1BG-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
A1BG-AS1

No disorders were found for A1BG-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for A1BG-AS1 Gene

Publications for A1BG-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for A1BG-AS1 Gene

Sources for A1BG-AS1 Gene

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