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Aliases for A1BG-AS1 Gene

Subcategory (RNA class) for A1BG-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for A1BG-AS1 Gene

  • A1BG Antisense RNA 1 2 3 5
  • A1BG Antisense RNA 1 (Non-Protein Coding) 2 3
  • A1BG Antisense RNA (Non-Protein Coding) 2 3
  • Non-Protein Coding RNA 181 2
  • NCRNA00181 3
  • A1BG-AS 3
  • A1BGAS 3

External Ids for A1BG-AS1 Gene

Previous HGNC Symbols for A1BG-AS1 Gene

  • NCRNA00181
  • A1BGAS
  • A1BG-AS

Previous GeneCards Identifiers for A1BG-AS1 Gene

  • GC19P059058
  • GC19P059072
  • GC19P059085
  • GC19P059104
  • GC19P059146
  • GC19P059203
  • GC19P058860

Summaries for A1BG-AS1 Gene

GeneCards Summary for A1BG-AS1 Gene

A1BG-AS1 (A1BG Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for A1BG-AS1 Gene

Genomics for A1BG-AS1 Gene

Regulatory Elements for A1BG-AS1 Gene

Enhancers for A1BG-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F057487 0.7 ENCODE 3.9 -859.7 -859708 1.9 HDGF PKNOX1 ATF1 CREB3L1 WRNIP1 ARID4B SIN3A YBX1 ZNF48 ETS1 ZNF419 VN1R1 ZNF773 ZNF805 RPS5 ZNF550 ZNF544 A1BG-AS1 ENSG00000268107 GC19P057489
GH19F058349 0.2 Ensembl 0.8 +2.5 2450 0.8 ZNF366 ZNF512 PRDM1 A1BG-AS1 ENSG00000279611
GH19F058346 0.7 ENCODE 0.8 -0.2 -222 1.6 HDGF ATF1 CREB3L1 SIN3A ZNF2 ZEB1 GLIS2 SCRT2 ZNF143 ZNF207 A1BG ZNF324 ZNF446 RNU6-1337P A1BG-AS1 PIR61497
GH19F058339 0.2 ENCODE 0.4 -8.4 -8412 0.1 CTCF PKNOX1 ZBTB33 ZBTB45 ZNF324B ZNF446 RNU6-1337P PIR61497 A1BG-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around A1BG-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for A1BG-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000349283 49 2401 HDGF ATF1 SIN3A ZNF2 ZEB1 ZNF121 GLIS2 SCRT2 ZNF143 ZNF362

Genomic Location for A1BG-AS1 Gene

Chromosome:
19
Start:
58,347,751 bp from pter
End:
58,355,183 bp from pter
Size:
7,433 bases
Orientation:
Plus strand

Genomic View for A1BG-AS1 Gene

Genes around A1BG-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
A1BG-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for A1BG-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for A1BG-AS1 Gene

Proteins for A1BG-AS1 Gene

Post-translational modifications for A1BG-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for A1BG-AS1 Gene

Domains & Families for A1BG-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for A1BG-AS1 Gene

Function for A1BG-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for A1BG-AS1 Gene

Localization for A1BG-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for A1BG-AS1 Gene

Pathways & Interactions for A1BG-AS1 Gene

SuperPathways for A1BG-AS1 Gene

No Data Available

Interacting Proteins for A1BG-AS1 Gene

Gene Ontology (GO) - Biological Process for A1BG-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for A1BG-AS1 Gene

Transcripts for A1BG-AS1 Gene

mRNA/cDNA for A1BG-AS1 Gene

(6) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for A1BG-AS1 Gene

A1BG antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for A1BG-AS1 Gene

No ASD Table

Relevant External Links for A1BG-AS1 Gene

GeneLoc Exon Structure for
A1BG-AS1
ECgene alternative splicing isoforms for
A1BG-AS1

Expression for A1BG-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for A1BG-AS1 Gene

SOURCE GeneReport for Unigene cluster for A1BG-AS1 Gene:

Hs.709582
genes like me logo Genes that share expression patterns with A1BG-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for A1BG-AS1 Gene

Orthologs for A1BG-AS1 Gene

Evolution for A1BG-AS1 Gene

ENSEMBL:
Gene Tree for A1BG-AS1 (if available)
TreeFam:
Gene Tree for A1BG-AS1 (if available)

No data available for Orthologs for A1BG-AS1 Gene

Paralogs for A1BG-AS1 Gene

No data available for Paralogs for A1BG-AS1 Gene

Variants for A1BG-AS1 Gene

Sequence variations from dbSNP and Humsavar for A1BG-AS1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10164322 -- 58,351,795(+) CCATT(C/T)TTTTT intron-variant, upstream-variant-2KB
rs10164334 -- 58,352,075(+) aggcg(C/T)gagcc intron-variant, nc-transcript-variant
rs10402021 -- 58,354,221(+) CTCCA(C/T)GGACA intron-variant, upstream-variant-2KB
rs111295433 -- 58,353,291(+) ACTCA(A/C/G)ATATG intron-variant, splice-donor-variant
rs112746697 -- 58,353,329(+) ACACC(C/T)GCGGA intron-variant, splice-acceptor-variant

Structural Variations from Database of Genomic Variants (DGV) for A1BG-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv515731 CNV gain+loss 19592680
nsv817878 CNV loss 17921354
nsv833887 CNV loss 17160897
nsv833888 CNV loss 17160897

Relevant External Links for A1BG-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
A1BG-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for A1BG-AS1 Gene

Disorders for A1BG-AS1 Gene

Relevant External Links for A1BG-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
A1BG-AS1

No disorders were found for A1BG-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for A1BG-AS1 Gene

Publications for A1BG-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for A1BG-AS1 Gene

Sources for A1BG-AS1 Gene

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