61E3.4 Gene
protein-coding GIFtS: 20
GCID: GC16M021847 (predicted)
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61E3.4
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Aliases
for 61E3.4 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
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| Nuclear Pore Complex Interacting Protein-Like2 | | NPIPL34 | | Protein 61E3.44 | | Uncharacterized Protein4 |
Export aliases for 61E3.4 gene to outside databases |
Summaries
for 61E3.4 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for 61E3.4 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for 61E3.4
Other transcription factors
Search SABiosciences Chromatin IP Primers for 61E3.4
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat 61E3.4 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 16p12.2 Ensembl cytogenetic band: 16p12.2 61E3.4 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 16 GeneLoc Exon Structure GeneLoc location for GC16M021847: view genomic region
(about GC identifiers)
Start:
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21,845,884 bp from pter |
End:
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21,892,148 bp from pter |
Size:
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46,265 bases |
Orientation:
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minus strand |
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Proteins
for 61E3.4 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/TrEMBL: E5RHP9 (See
protein sequence)Recommended Name: Nuclear pore complex-interacting protein-like 3 Size: 49 amino acids; 5676 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary data
Secondary accessions: E7EQ51UniProtKB/TrEMBL: E7ENX1 (See
protein sequence) Recommended Name: Protein 61E3.4 Size: 661 amino acids; 74088 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary dataUniProtKB/TrEMBL: E9PKP1 (See
protein sequence) Recommended Name: Protein 61E3.4 Size: 595 amino acids; 65915 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary dataUniProtKB/TrEMBL: F5GW90 (See
protein sequence) Recommended Name: Protein 61E3.4 Size: 420 amino acids; 45766 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary dataUniProtKB/TrEMBL: F5GWQ4 (See
protein sequence) Recommended Name: Nuclear pore complex-interacting protein-like 3 Size: 40 amino acids; 4627 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary dataUniProtKB/TrEMBL: F5GXZ6 (See
protein sequence) Recommended Name: Protein 61E3.4 Size: 11 amino acids; 1229 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary dataUniProtKB/TrEMBL: F5GYP3 (See
protein sequence) Recommended Name: Protein 61E3.4 Size: 78 amino acids; 8909 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary dataUniProtKB/TrEMBL: F5GZP9 (See
protein sequence) Recommended Name: Protein 61E3.4 Size: 14 amino acids; 1576 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary dataUniProtKB/TrEMBL: F5H6Y6 (See
protein sequence) Recommended Name: Protein 61E3.4 Size: 120 amino acids; 13965 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary dataUniProtKB/TrEMBL: F5H6Z5 (See
protein sequence) Recommended Name: Protein 61E3.4 Size: 104 amino acids; 11927 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary dataUniProtKB/TrEMBL: F5H7Q7 (See
protein sequence) Recommended Name: Protein 61E3.4 Size: 834 amino acids; 92250 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary dataUniProtKB/TrEMBL: H0YIQ5 (See
protein sequence) Recommended Name: Protein 61E3.4 Size: 68 amino acids; 7929 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary dataUniProtKB/TrEMBL: H3BQU5 (See
protein sequence) Recommended Name: Protein 61E3.4 Size: 84 amino acids; 9683 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary data61E3.4 Protein expression data from MOPED and PaxDb: About this image 
ENSEMBL proteins: ENSP00000442776 ENSP00000339196 ENSP00000429543 ENSP00000439732 ENSP00000429523 ENSP00000439720 ENSP00000433301 ENSP00000442065 ENSP00000443445 ENSP00000404439 ENSP00000349936 ENSP00000392155 ENSP00000439166
Human Recombinant Protein Products for 61E3.4:
61E3.4 Antibody Products:
Assay Products for 61E3.4: |
Protein
Domains /
Families
for 61E3.4 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
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61E3.4 for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry E5RHP9Graphical View of Domain Structure for InterPro Entry E7ENX1Graphical View of Domain Structure for InterPro Entry E9PKP1Graphical View of Domain Structure for InterPro Entry F5GW90Graphical View of Domain Structure for InterPro Entry F5GWQ4Graphical View of Domain Structure for InterPro Entry F5GXZ6Graphical View of Domain Structure for InterPro Entry F5GYP3Graphical View of Domain Structure for InterPro Entry F5GZP9Graphical View of Domain Structure for InterPro Entry F5H6Y6Graphical View of Domain Structure for InterPro Entry F5H6Z5Graphical View of Domain Structure for InterPro Entry F5H7Q7Graphical View of Domain Structure for InterPro Entry H0YIQ5Graphical View of Domain Structure for InterPro Entry H3BQU5ProtoNet protein and cluster: E5RHP9 |
Function
for 61E3.4 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
Sirion Biotech,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
Sirion Biotech,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
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Animal Models:
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for 61E3.4 |
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Pathways & Interactions
for 61E3.4 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
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Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for 61E3.4
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Drugs & Compounds
for 61E3.4 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for 61E3.4
Search CenterWatch for drugs/clinical trials and news about 61E3.4 
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Transcripts
for 61E3.4 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
Sirion Biotech,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
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18/23 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 23): ENST00000165086 ENST00000545367 ENST00000542133 ENST00000543660 ENST00000541329
ENST00000539318 ENST00000341400 ENST00000518761 ENST00000543654 ENST00000520808
ENST00000542338 ENST00000539191 ENST00000536041 ENST00000529969 ENST00000540103
ENST00000543449 ENST00000541674 ENST00000544693
2 AceView cDNA sequences: AW849367 AW849175
GeneLoc Exon Structure
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Expression
for 61E3.4 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| See probesets specificity/sensitivity at GeneAnnot
CGAP TAG: --
See 61E3.4 Protein Expression from SPIRE MOPED and PaxDB SABiosciences Custom PCR Arrays for 61E3.4
Primer
Products: |  | Browse OriGene genome-wide validated SYBR primer pairs
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat 61E3.4 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat 61E3.4 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat 61E3.4 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for 61E3.4 |
Orthologs
for 61E3.4 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
--
ENSEMBL Gene Tree for 61E3.4 (if available)
TreeFam Gene Tree for 61E3.4 (if available) |
Paralogs
for 61E3.4 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for 61E3.4 gene
- LOC100132247 NPIPL31 2 LOC7288881 2 LOC4403532 ENSG000001980642 LOC7287412 ENSG000002149402 NPIPL12
- PKD1P12 NPIPL22 LOC6427992 LOC1002883322 NPIP2 ENSG000002149672 LOC1005076072 ENSG000002262322
- LOC7299782 LOC6427782 LOC7301532 ENSG000001969932 LOC6130372
18/19 SIMAP similar genes for 61E3.4 using alignment to 13 protein entries: E5RHP9_HUMAN (see all proteins)
(see all similar genes):A-575C2.4 NPIPL3 LOC728888 ACSM1 LOC642778 NPIPP1
Nbla00537 LOC728734 ACSM3 NPIP ACSM2A ACSM2B
NPIPL1 LOC728741 PKD1P1 LOC339047 NPIPL2 A-589H1.1
61E3.4 for paralogs About GeneDecksing
1 Pseudogenes.org Pseudogene for 61E3.4
PGOHUM00000260907
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Genomic Variants
for 61E3.4 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 16 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
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HapMap Linkage Disequilibrium report for 61E3.4 (21845884 - 21892148 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for 61E3.4: -- | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing 61E3.4 |
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Disorders
/ Diseases
for 61E3.4 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Publications
for 61E3.4 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for 61E3.4 gene integrated from 9 sources:
(articles sorted by number of sources associating them with 61E3.4) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Genome duplications and other features in 12 Mb of DNA sequence from human chromosome 16p and 16q. (PubMed id 10493829)1 Loftus B.J.... Adams M.D. (1999)
- Prediction of the coding sequences of unidentified human genes. VI. The coding sequences of 80 new genes (KIAA0201-KIAA0280) deduced by analysis of cDNA clones from cell line KG-1 and brain. (PubMed id 9039502)1 Nagase T....Nomura N. (1996)
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External Searches for 61E3.4 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing 61E3.4 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
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Other Databases showing 61E3.4 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing 61E3.4 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
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About This Section
| Patent Information for 61E3.4 gene:
Search GeneIP for patents involving 61E3.4
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for 61E3.4 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat 61E3.4 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing 61E3.4 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat 61E3.4 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat 61E3.4 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat 61E3.4 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat 61E3.4 |
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 |  |  |  | |
| | | | Search Tocris compounds for 61E3.4 |
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 | | | 61E3.4 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for 61E3.4 |
|  |  |  |  | | | | Search ThermoFisher Antibodies for 61E3.4 |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat 61E3.4 |
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