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Aliases & Descriptions for TSPO
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases BZRP 2 , 3 DBI 1 , 2 IBP 1 , 2 MBR 1 , 2 , 3 OTTHUMP00000028891 2 PBR 1 , 2 , 3 PKBS 1 , 2 , 3 PTBR 2 mDRC 1 , 2 pk18 1 , 2
Descriptions Mitochondrial benzodiazepine receptor 2 , 3 Peripheral-type benzodiazepine receptor 2 , 3 benzodiazapine receptor (peripheral) 1 benzodiazepine peripheral binding site 2 peripheral benzodiazepine receptor 2 translocator protein 2 translocator protein (18kDa) 2
Search outside databases for aliases for TSPO gene
Summaries for TSPO (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for TSPO : Present mainly in the mitochondrial compartment of peripheral tissues, the protein encoded by thisgene interacts with some benzodiazepines and has different affinities than its endogenouscounterpart. The protein is a key factor in the flow of cholesterol into mitochondria to permitthe initiation of steroid hormone synthesis. Alternate transcriptional splice variants, encodingdifferent isoforms, have been characterized. [provided by RefSeq] UniProtKB/Swiss-Prot: TSPO_HUMAN, P30536 Function : Responsible for the manifestation of peripheral-type benzodiazepine recognition sites andis most likely to comprise binding domains for benzodiazepines and isoquinoline carboxamides. Mayplay a role in the transport of porphyrins and heme. Plays a role in the transport of cholesterolacross mitochondrial membranes in steroidogenic cells (By similarity)
Genomic Location for TSPO
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the TSPO gene Entrez Gene cytogenetic band: 22q13.31 Ensembl cytogenetic band: 22q13.2 HGNC cytogenetic band: 22q13.3 TSPO Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 22 GeneLoc Exon Structure
GeneLoc location for GC22P041877:
(about GC identifiers )
Start:
41,877,479 bp from pter
End:
41,889,192 bp from pter
Size:
11,714 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000022.9 NT_011520.11 Proteins for TSPO
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: TSPO_HUMAN, P30536 (See
protein sequence )Recommended Name: Translocator protein Size : 169 amino acids; 18779 Da
Subunit : Interacts with BZRAP1 (By similarity). May interact with STAR (By similarity). Interactswith MOST-1
Subcellular location : Mitochondrion membrane; Multi-pass membrane protein
Secondary accessions : Q53Y59 Q6ICF9 Q96TF6
REFSEQ proteins (2 alternative transcripts):
NP_000705.2 NP_009295.2 ENSEMBL proteins: ENSP00000379563 ENSP00000355074 ENSP00000328973 ENSP00000338004 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 4 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for TSPO: Assays for TSPO:
Protein
Domains/ Families for TSPO(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P30536 ProtoNet protein and cluster: P30536
1 Blocks protein family : IPB004307 TspO and MBR related proteins UniProtKB/Swiss-Prot: TSPO_HUMAN, P30536 Similarity : Belongs to the TspO/BZRP family
Gene Function for TSPO
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_000714 Applied Biosystems Silencer ® siRNAs for TSPO Sigma-Aldrich siRNA and siRNA Panels for TSPO Sigma-Aldrich shRNA for TSPO Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000714                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000714                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_000714  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000714 UniProtKB/Swiss-Prot: TSPO_HUMAN, P30536 Function : Responsible for the manifestation of peripheral-type benzodiazepine recognition sites andis most likely to comprise binding domains for benzodiazepines and isoquinoline carboxamides. Mayplay a role in the transport of porphyrins and heme. Plays a role in the transport of cholesterolacross mitochondrial membranes in steroidogenic cells (By similarity)
3 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for TSPO
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/12 Interacting proteins for TSPO (ENSP00000338004 3 ) via UniProtKB, MINT, and/or STRING (see all 12
)About this table 5/7 Gene Ontology (GO) biological process terms (links to tree view) (see all 7
):
About this table
Drugs & Compounds for TSPO (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for TSPO 10/19 Novoseek chemical compound relationships for TSPO gene (see all 19
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
benzodiazepine
98.55
2614
8306240 (10), 10664825 (9), 17027961 (8), 8868371 (7) (see all 99 )
iomazenil
93.26
17
7662908 (1), 12440611 (1), 8691270 (1), 9212889 (1) (see all 16 )
benzodiazepines
86.58
72
1980690 (3), 1637606 (2), 8262176 (2), 14678758 (2) (see all 60 )
triakontatetraneuropeptide
73.82
3
8380885 (1), 9460762 (1)
sarmazenil
71.99
3
9586852 (2), 9839004 (1)
beta-carboline
68.57
7
1365658 (1), 2155806 (1), 2158440 (1), 8851918 (1) (see all 7 )
l-ornithine l-aspartate
61.01
1
17295849 (1)
ptpc
59.00
4
11355954 (1), 15033708 (1)
carbon-11
57.76
3
8635180 (1), 9323267 (1), 8586102 (1)
lonidamine
52.22
2
9752269 (1), 10353597 (1)
About this table
Transcripts for TSPO(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_000714 Sigma-Aldrich siRNA and siRNA Panels for TSPO Sigma-Aldrich shRNA for TSPO Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000714 NM_007311
REFSEQ mRNAs for TSPO gene (2 alternative transcripts): NM_000714.4 NM_007311.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000714 NM_007311
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000714                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000714                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_000714  
Additional cDNA sequence: AF075589.1 AF075590.1 AY998017.1 BC001110.2 BT006949.1 CR456409.1 CR457007.1 CR590116.1 CR607955.1 CR609727.1 CR617902.1 CR619651.1 CR621254.1 L21950.1 M36035.1
7 DOTS entries : DT.40127929 DT.98131737 DT.100801819 DT.100643566 DT.97855685 DT.97855686 DT.97821978
24/442 AceView cDNA sequences (see all 442
):BM549915 BQ773690 CR619651 BM853651 CR456409 BG171507 CD370271 AA314709 CR617902 CR609727 CR607955 BM014524 BM761374 AW469169 BE908317 BM810547 CA307061 AW328575 AF075590 BG575252 BU625404 BX391144 BM784742 BU177060
highest scoring ESTs for TSPO :M36035 AA007504 AA036726 AA037186 AA056606 AA069479 AA070923 AA099285 AA100452 AA158134
Unigene Cluster for TSPO: Translocator protein (18kDa) Hs.202 [show with all ESTs ] Unigene Representative Sequence: BM924710 GeneLoc Exon Structure 5 Alternative Splicing Database (ASD) splice patterns (SP) for TSPO ExUns: 1 ^ 2a · 2b · 2c ^ 3a · 3b · 3c ^ 4 ^ 5a · 5b · 5c SP1 :   -   -   -                 SP2 :       -                 SP3 :             -           SP4 :   -   -   -   -   -   -           SP5 :                      
About this scheme ECgene alternative splicing isoforms for TSPO 4 Ensembl transcripts including schematic representations : ENST00000396265
ENST00000361449
ENST00000329563
ENST00000337554
Expression for TSPO
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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TSPO expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for TSPO 1 / 2 / 3
3 probe-sets matching TSPO gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GAATTTTATASOURCE GeneReport for Unigene cluster: Hs.202
Orthologs for TSPO
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for TSPO gene from 5/13 species (see all 13
)
About this table Species with no ortholog for TSPO ENSEMBL Gene Tree for TSPO Paralogs for TSPO (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for TSPO gene BZRPL1 2
SNPs/Variants for TSPO (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for TSPO (up to first 250kb)
Disorders & Mutations for TSPO
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 109610 10/94 Novoseek disease relationships for TSPO gene (see all 94
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
hepatic encephalopathy
78.94
53
8276347 (5), 11687160 (4), 15106178 (4), 2172467 (3) (see all 31 )
chronic insomnia
61.88
1
19201632 (1)
hepatic coma
61.26
5
2161396 (1), 9347201 (1), 16563564 (1), 7748297 (1) (see all 5 )
epilepsy temporal lobe
58.98
17
11893007 (2), 12199729 (2), 11518000 (2), 10599778 (1) (see all 14 )
panic disorder
54.75
29
10664825 (5), 10023509 (3), 7624108 (3), 9928900 (3) (see all 16 )
epilepsies partial
53.93
14
10390953 (2), 1317662 (2), 8956845 (1), 9795703 (1) (see all 12 )
anxiety disorders
48.76
10
8748388 (1), 1324584 (1), 10103141 (1), 1687977 (1) (see all 10 )
glioma
48.06
40
16026165 (4), 7714547 (3), 9540054 (3), 15276076 (3) (see all 21 )
epilepsy
46.65
11
11882054 (2), 9237052 (1), 8797068 (1), 10390953 (1) (see all 7 )
stage iii colorectal cancer
46.26
3
12374690 (3)
About this table Human Gene Mutation Database : TSPO Human Genome Epidemiology Navigator: TSPO (2 documents)
Medical News for TSPO (Possibly Related Articles in
Doctor's Guide )
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--
Publications for TSPO (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/541 PubMed articles for TSPO gene (see all 541
): Translocator protein (18kDa): new nomenclature for the peripheral-type benzodiazepine receptor based on its structure and molecular function. (PubMed id 16822554) 2, 3, 4 Papadopoulos V....Gavish M. (2006) Molecular cloning and chromosomal localization of a human peripheral-type benzodiazepine receptor. (PubMed id 1847678) 2, 3, 4 Riond J....Ferrara P. (1991) Peripheral benzodiazepine receptor: characterization in human T- lymphoma Jurkat cells. (PubMed id 16189298) 1, 3, 4 Costa B.... Martini C. (2006) Cloning and characterization of PRAX-1. A new protein that specifically interacts with the peripheral benzodiazepine receptor. (PubMed id 9915832) 1, 3, 4 Galiegue S....Casellas P. (1999) The human "peripheral-type" benzodiazepine receptor: regional mapping of the gene and characterization of the receptor expressed from cDNA. (PubMed id 1326278) 1, 2, 3 Chang Y.J....Strauss J.F. (1992) No association of two missense variations of the benzodiazepine receptor (peripheral) gene and mood disorders in a Japanese sample. (PubMed id 11304832) 1, 3, 4 Kurumaji A.... Toru M. (2001) An association study between two missense variations of the benzodiazepine receptor (peripheral) gene and schizophrenia in a Japanese sample. (PubMed id 11215759) 1, 3, 4 Kurumaji A.... Toru M. (2000) A genome annotation-driven approach to cloning the human ORFeome. (PubMed id 15461802) 3, 4 Collins J.E.... Dunham I. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) The DNA sequence of human chromosome 22. (PubMed id 10591208) 3, 4 Dunham I....O'Brien K.P. (1999)
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Genome Databases showing TSPO
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing TSPO
(According to HUGE )
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--
Specialized Databases showing TSPO (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
NIEHS-SNPs http://egp.gs.washington.edu/data/bzrp/
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-- Services for TSPO (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for TSPO:
Recombinant Proteins (PBR ) Antibodies (PBR )
Search Tocris compounds for TSPO
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Services for TSPO
Summaries for TSPO
Technologies for TSPO
Transcripts for TSPO
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009