THRB Gene
protein-coding GIFtS : 69
GC03M024139
thyroid hormone receptor, beta (erythroblastic leukemia viral (v-erb-a) oncogene homolog 2, avian) (Previous names: thyroid hormone receptor, beta (avian erythroblastic leukemia viral (v-erb-a) oncogene homolog 2) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbol: ERBA2 )
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Aliases & Descriptions for THRB
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ERBA-BETA 1 , 2 ERBA2 2 , 3 , 5 GRTH 1 , 2 MGC126109 2 MGC126110 2 NR1A2 1 , 2 , 3 OTTHUMP00000161044 2 PRTH 2 , 5 THR1 1 , 2 , 3 , 5 THRB1 1 , 2 THRB2 1 , 2
Descriptions Nuclear receptor subfamily 1 group A member 2 3 avian erythroblastic leukemia viral (v-erb-a) oncogene homolog 2 2 oncogene ERBA2 2 thyroid hormone receptor beta 1 2 thyroid hormone receptor beta isoform 2 thyroid hormone receptor, beta 2 thyroid hormone receptor, beta (avian erythroblastic leukemia viral (v-erb-a) oncogene homolog 2) 1 thyroid hormone receptor, beta (erythroblastic leukemia viral (v-erb-a) oncogene homolog 2, avian) 2
Search outside databases for aliases for THRB genePrevious GC identifers: GC03M023830 GC03M024013 GC03M024138
Summaries for THRB (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for THRB : The protein encoded by this gene is a nuclear hormone receptor for triiodothyronine. It is one ofthe several receptors for thyroid hormone, and has been shown to mediate the biological activitiesof thyroid hormone. Knockout studies in mice suggest that the different receptors, while havingcertain extent of redundancy, may mediate different functions of thyroid hormone. Mutations inthis gene are known to be a cause of generalized thyroid hormone resistance (GTHR), a syndromecharacterized by goiter and high levels of circulating thyroid hormone (T3-T4), with normal orslightly elevated thyroid stimulating hormone (TSH). Several alternatively spliced transcriptvariants encoding the same protein have been observed for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: THB_HUMAN, P10828 Function : High affinity receptor for triiodothyronine
Gene Wiki entry for THRB (Thyroid_hormone_receptor_beta)
Genomic Location for THRB
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the THRB gene Entrez Gene cytogenetic band: 3p24.2 Ensembl cytogenetic band: 3p24.2 HGNC cytogenetic band: 3p24.1-p22 THRB Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure
GeneLoc location for GC03M024139:
(about GC identifiers )
Start:
24,134,709 bp from pter
End:
24,511,317 bp from pter
Size:
376,609 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000003.10 NT_022517.17 Proteins for THRB
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: THB_HUMAN, P10828 (See
protein sequence )Recommended Name: Thyroid hormone receptor beta Size : 461 amino acids; 52788 Da
Subunit : Interacts with NOCA7 in a ligand-inducible manner. Interacts with C1D (By similarity)
Subcellular location : Nucleus
PDB structures from and Proteopedia : 1BSX (3D)
 1N46 (3D)
 1NAX (3D)
 1NQ0 (3D)
 1NQ1 (3D)
 1NQ2 (3D)
 1NUO (3D)
 1Q4X (3D)
 1R6G (3D)
 1XZX (3D)
 1Y0X (3D)
 2J4A (3D)
 2NLL (3D)
 2PIN (3D)
 3D57 (3D)
 3GWS (3D)
 
Secondary accessions : P37243 Q13986 Q3KP35 Q6WGL2Alternative splicing : 2 isoforms : P10828-1 P10828-2, P37243-1
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_000452.2 NP_001121648.1 NP_001121649.1 ENSEMBL proteins: ENSP00000379904 ENSP00000280696 ENSP00000348827 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: THRB 1 Gene Ontology (GO) cellular component term (links to tree view) :
About this table Antibodies for THRB: Assays for THRB:
Protein
Domains/ Families for THRB(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P10828 ProtoNet protein and cluster: P10828
2 Blocks protein families : IPB001723 Steroid hormone receptor signature IPB001728 Thyroid hormone receptor signature UniProtKB/Swiss-Prot: THB_HUMAN, P10828 Domain : Composed of three domains: a modulating N-terminal domain, a DNA-binding domain and aC-terminal steroid-binding domain Similarity : Belongs to the nuclear hormone receptor family. NR1 subfamilySimilarity : Contains 1 nuclear receptor DNA-binding domain
Gene Function for THRB
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Inhib. RNA: Invitrogen RNAi Products for gene knock-down (THRB ) Millipore RNAi Products for the Analysis of THRB Gene knock-down Abnova Chimera RNAi Products for Gene knock-down (THRB )
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_000461 Applied Biosystems Silencer ® siRNAs for THRB Sigma-Aldrich siRNA and siRNA Panels for THRB Sigma-Aldrich shRNA Panels and shRNA for THRB Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_000461                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_000461                                  untagged cDNA clones in CMV expression vector (see all 4 ): AK098084  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001128176 UniProtKB/Swiss-Prot: THB_HUMAN, P10828 Function : High affinity receptor for triiodothyronine
Genatlas biochemistry entry for THRB :thyroid hormone receptor,beta,essential for inner ear development,steroid/thyroid hormone receptorsuperfamily
15/18 MGI mutant phenotypes (inferred from 11 alleles ) (MGI details for Thrb) (see all 18
):5/10 Gene Ontology (GO) molecular function terms (links to tree view) (see all 10
):
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Pathways & Interactions for THRB
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for THRB (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for THRB 5/39 Interacting proteins for THRB (P10828 1 , 2 ENSP00000280696 3 ) via UniProtKB, MINT, and/or STRING (see all 39
)About this table 5/9 Gene Ontology (GO) biological process terms (links to tree view) (see all 9
):
GO ID Qualified GO term Evidence PubMed IDs GO:0006355 regulation of transcription, DNA-dependent
IEA -- GO:0007605 sensory perception of sound
IEA -- GO:0008016 regulation of heart contraction
IEA -- GO:0009887 organ morphogenesis
IEA -- GO:0016481 negative regulation of transcription
IEA --
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Drugs & Compounds for THRB (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for THRB 10/15 Novoseek chemical compound relationships for THRB gene (see all 15
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
prt-h
91.04
5
7920008 (1), 10022392 (1), 9350446 (1), 9534036 (1) (see all 5 )
triiodothyronine
74.03
2
17363077 (1), 19378427 (1)
desethylamiodarone
60.10
4
11007966 (2), 10350052 (1)
leucine
38.00
2
9849963 (1), 8990194 (1)
threonine
34.54
6
8786093 (1), 10710882 (1), 15133108 (1), 1502193 (1) (see all 5 )
cytosine
34.00
1
17596672 (1)
phosphatidylinositol
32.44
2
16862226 (1), 16446424 (1)
steroid
23.71
4
19051350 (1), 12586842 (1)
methionine
10.75
2
8786093 (1), 15133108 (1)
proline
8.40
1
7593432 (1)
About this table
Transcripts for THRB(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
OriGene , Expression Assays from Applied Biosystems )About This Section
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Inhib. RNA: Invitrogen RNAi Products for gene knock-down (THRB ) Millipore RNAi Products for the Analysis of THRB Gene knock-down Abnova Chimera RNAi Products for Gene knock-down (THRB )
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_000461 Sigma-Aldrich siRNA and siRNA Panels for THRB Sigma-Aldrich shRNA Panels and shRNA for THRB Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000461 NM_001128176 NM_001128177
REFSEQ mRNAs for THRB gene (3 alternative transcripts): NM_000461.4 NM_001128176.1 NM_001128177.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000461 NM_001128176 NM_001128177
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_000461                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_000461                                  untagged cDNA clones in CMV expression vector (see all 4 ): AK098084  
Additional cDNA sequence: AB307687.1 AK095776.1 AK096628.1 AK096885.1 AK098084.1 AK124042.1 AY286465.1 AY286466.1 AY286467.1 AY286468.1 AY286469.1 AY286470.1 AY286471.1 BC028910.1 BC106929.1 BC106930.1 M26747.1 X04707.1 X74497.1
11 DOTS entries : DT.314132 DT.455589 DT.40131089 DT.102839051 DT.75190909 DT.100010665 DT.100775058 DT.40131088 DT.97825383 DT.120902200 DT.443533
24/100 AceView cDNA sequences (see all 100
):BC028910 AI863074 AL713041 AA258459 AI193412 AI767555 BQ879477 BU739344 NM_000461 AA704234 BM715006 AI192925 BU157865 AI312948 BF431989 AI590400 AV682743 BX489919 AY286466 AY286469 BV205284 X74497 CD250854 AI092215
highest scoring ESTs for THRB :M26747 AK096628 AY286465 BQ879477 BU157865 X04707 AA017575 AA258389 AI767555 AL713041
Unigene Cluster for THRB: Thyroid hormone receptor, beta (erythroblastic leukemia viral (v-erb-a) oncogene homolog 2, avian) Hs.187861 [show with all ESTs ] Unigene Representative Sequence: NM_001128177 GeneLoc Exon Structure 3 Alternative Splicing Database (ASD) splice patterns (SP) for THRB ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b SP1 :       -                       SP2 :     -                         SP3 :     -   -   -                    
About this scheme ECgene alternative splicing isoforms for THRB 3 Ensembl transcripts including schematic representations : ENST00000396671
ENST00000280696
ENST00000356447
Expression for THRB
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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THRB expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for THRB 1 / 2 / 3
11 probe-sets matching THRB gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AACTGAATTTSOURCE GeneReport for Unigene cluster: Hs.187861 Expression variation in blood from EXPOLDB for THRB
Orthologs for THRB
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for THRB gene from 5/7 species (see all 7
)
About this table Species with no ortholog for THRB ENSEMBL Gene Tree for THRB Paralogs for THRB (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for THRB gene VDR 2 THRA 2 NR1I2 2 NR1I3 2
SNPs/Variants for THRB (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for THRB (up to first 250kb)
Disorders & Mutations for THRB
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 190160 disorders : 188570 274300 145650 UniProtKB/Swiss-Prot: THB_HUMAN, P10828
Defects in THRB are the cause of generalized thyroid hormone resistance (GTHR)[MIM:188570, 274300]. GTHR is transmitted as an autosomal dominant trait, but an autosomalrecessive form also exists. The disease is characterized by goiter, abnormal mental functions,increased susceptibility to infections, abnormal growth and bone maturation, tachycardia anddeafness. Affected individuals may also have attention deficit-hyperactivity disorders (ADHD) andlanguage difficulties. GTHR patients also have high levels of circulating thyroid hormones(T3-T4), with normal or slightly elevated thyroid stimulating hormone (TSH) Defects in THRB are the cause of selective pituitary thyroid hormone resistance (PRTH)[MIM:145650]; also called familial hyperthyroidism due to inappropriate thyrotropin secretion.PRTH is a variant form of thyroid hormone resistance and is characterized by clinicalhyperthyroidism, with elevated free thyroid hormones, but inappropriately normal serum TSH. UnlikeGRTH, where the syndrome usually segregates with a dominant allele, the mode of inheritance inPRTH has not been established
10/18 Novoseek disease relationships for THRB gene (see all 18
)
About this table Human Gene Mutation Database : THRB Genetic Association Database: THRB Human Genome Epidemiology Navigator: THRB (96 documents)
Medical News for THRB (Possibly Related Articles in
Doctor's Guide )
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--
Publications for THRB (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/302 PubMed articles for THRB gene (see all 302
): Structural analysis of human thyroid hormone receptor beta gene. (PubMed id 1973914) 2, 3, 4 Sakurai A.... Degroot L.J. (1990) Multiple messenger ribonucleic acid variants regulate cell-specific expression of human thyroid hormone receptor beta1. (PubMed id 15105435) 1, 3, 4 Frankton S.... Williams G.R. (2004) T426I a new mutation in the thyroid hormone receptor gene in a sporadic patient with resistance to thyroid hormone and dysmorphism. (PubMed id 10660344) 1, 3, 4 Menzaghi C.... de Filippis V. (1998) A new point mutation (C446R) in the thyroid hormone receptor-beta gene of a family with resistance to thyroid hormone. (PubMed id 8175986) 1, 3, 4 Weiss R.E....Refetoff S. (1994) Identical mutations in unrelated families with generalized resistance to thyroid hormone occur in cytosine-guanine-rich areas of the thyroid hormone receptor beta gene. Analysis of 15 families. (PubMed id 8514853) 1, 3, 4 Weiss R.E.... Refetoff S. (1993) A point mutation in the 3,5,3'-triiodothyronine-binding domain of thyroid hormone receptor-beta associated with a family with generalized resistance to thyroid hormone. (PubMed id 1619012) 1, 3, 4 Shuto Y.... Okazaki T. (1992) Functional properties of a novel mutant thyroid hormone receptor in a family with generalized thyroid hormone resistance syndrome. (PubMed id 1563081) 1, 3, 4 Adams M.... Chatterjee V.K.K. (1992) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Polymorphisms in thyroid hormone pathway genes are associated with plasma TSH and iodothyronine levels in healthy subjects. (PubMed id 12788902) 3, 6 Peeters R.P.... Visser T.J. (2003) ERAP140, a conserved tissue-specific nuclear receptor coactivator. (PubMed id 11971969) 3, 4 Shao W.... Brown M. (2002)
Search for THRB
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Genome Databases showing THRB
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing THRB
(According to HUGE )
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Specialized Databases showing THRB (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for THRB (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for THRB:
Search Tocris compounds for THRB
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009