 |
 | Services
| |
 |
Aliases & Descriptions for SRD5A1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 1.3.99.5 3 | | OTTHUMP00000115519 2 | | S5AR 3 |
| | | Descriptions |
|---|
| 3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1 2 | | 5-alpha reductase 2 | | SR type 1 3 | | Steroid 5-alpha-reductase 1 3 | | steroid 5-alpha-reductase type I 2 | | steroid-5-alpha-reductase 1 2 | steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1) 2 |
|
| | Search outside databases for aliases for SRD5A1 genePrevious GC identifers: GC05P006782 GC05P006666 |
Summaries for SRD5A1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for SRD5A1: Steroid 5-alpha-reductase (EC 1.3.99.5) catalyzes the conversion of testosterone into the more potent androgen, dihydrotestosterone (DHT). Also see SRD5A2 (MIM 607306).[supplied by OMIM] UniProtKB/Swiss-Prot: S5A1_HUMAN, P18405Function: Converts testosterone into 5-alpha-dihydrotestosterone and progesterone or corticosterone into their corresponding 5-alpha-3-oxosteroids. It plays a central role in sexual differentiation and androgen physiologyGene Wiki entry for SRD5A1 |
Genomic Location for SRD5A1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the SRD5A1 gene 
Entrez Gene cytogenetic band: 5p15 Ensembl cytogenetic band: 5p15.31 HGNC cytogenetic band: 5p15.31SRD5A1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure GeneLoc location for GC05P006686:
(about GC identifiers)
Start:
|
6,686,500 bp from pter |
End:
|
6,722,675 bp from pter |
Size:
|
36,176 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000005.8 NT_006576.15
| Proteins for SRD5A1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: S5A1_HUMAN, P18405 (See
protein sequence)Recommended Name: 3-oxo-5-alpha-steroid 4-dehydrogenase 1 Size: 259 amino acids; 29459 Da
Subcellular location: Microsome membrane; Multi-pass membrane protein. Endoplasmic reticulum membrane; Multi-pass membrane protein (Potential)
Secondary accessions: Q9UHY4 Q9UP36 Q9UP37REFSEQ proteins: NP_001038.1
ENSEMBL proteins: ENSP00000274192
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5/6 Gene Ontology (GO) cellular component terms (links to tree view) (see all 6
): About this table
Antibodies for SRD5A1: Assays for SRD5A1: | Protein
Domains/ Families for SRD5A1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P18405
ProtoNet protein and cluster: P18405 1 Blocks protein family: IPB001104 3-oxo-5-alpha-steroid 4-dehydrogenase
UniProtKB/Swiss-Prot: S5A1_HUMAN, P18405Similarity: Belongs to the steroid 5-alpha reductase family | Gene Function for SRD5A1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001047
Applied Biosystems Silencer® siRNAs for SRD5A1
Sigma-Aldrich siRNA and siRNA Panels for SRD5A1  Sigma-Aldrich shRNA for SRD5A1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001047                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001047                                  untagged cDNA clone in CMV expression vector: NM_001047 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001047
UniProtKB/Swiss-Prot: S5A1_HUMAN, P18405Function: Converts testosterone into 5-alpha-dihydrotestosterone and progesterone or corticosterone into their corresponding 5-alpha-3-oxosteroids. It plays a central role in sexual differentiation and androgen physiologyCatalytic activity: A 3-oxo-5-alpha-steroid + acceptor = a 3-oxo-Delta(4)-steroid + reduced acceptorBiophysicochemical properties: pH dependence: Optimally active at alkaline pHs;Induction: Its expression is regulated by androgens such as testosteroneEnzyme Number (IUBMB): EC 1.3.99.5 Genatlas biochemistry entry for SRD5A1:steroid 5 alpha-reductase (3-oxo-5 alpha-steroid delta 4-dehydrogenase) alpha polypeptide 1,catalyzing the conversion of testosterone to dihydrotestosterone2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Srd5a1):
3 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0003865 | 3-oxo-5-alpha-steroid 4-dehydrogenase activity |
IEA | -- | | GO:0009055 | electron carrier activity |
TAS | 1686016 | | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors |
IEA | -- | About this table | Pathways & Interactions for SRD5A1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
3 Sigma-Aldrich "Your Favorite Gene" Pathways for SRD5A1 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for SRD5A1 
5/6 Gene Ontology (GO) biological process terms (links to tree view) (see all 6
): About this table
|
Drugs & Compounds for SRD5A1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  | Sigma-Aldrich Small Molecules for SRD5A1: Inhibitor |
Compounds for SRD5A1 available from Tocris Bioscience
| Compound | Action |
CAS
number |
|---|
| Finasteride | Type II 5alpha-reductase inhibitor | [98319-26-7] | About this table
10/42 Novoseek chemical compound relationships for SRD5A1 gene (see all 42
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| mk 386 |
89.97 |
1 |
8903421 (1) |
| 17beta-hydroxysteroid |
86.91 |
69 |
10490108 (4), 2158194 (2), 12161528 (2), 15514087 (2) (see all 55) |
| 3-alpha-androstanediol glucuronide |
86.85 |
11 |
8941077 (2), 11699123 (1), 7769052 (1), 1424180 (1) (see all 6) |
| androstanedione |
86.71 |
11 |
2362429 (1), 9558487 (1), 12161528 (1), 12466325 (1) (see all 11) |
| androsterone glucuronide |
85.71 |
16 |
7962311 (2), 12398233 (1), 1424180 (1), 1426314 (1) (see all 7) |
| ly 191704 |
84.52 |
6 |
8389478 (4), 12466325 (1), 8964828 (1) |
| turosteride |
84.52 |
6 |
8240976 (3), 17326010 (1), 8142301 (1), 9029321 (1) |
| androstenedione |
82.83 |
32 |
12161528 (2), 1426314 (2), 2158194 (1), 2362429 (1) (see all 28) |
| 3alpha-hydroxysteroid |
82.75 |
25 |
12742591 (2), 2362429 (1), 1379259 (1), 9558487 (1) (see all 24) |
| epristeride |
82.11 |
5 |
8636334 (1), 10357260 (1), 17961376 (1), 9288184 (1) (see all 5) |
About this table
|
Transcripts for SRD5A1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001047
Sigma-Aldrich siRNA and siRNA Panels for SRD5A1  Sigma-Aldrich shRNA for SRD5A1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001047 REFSEQ mRNAs for SRD5A1 gene: NM_001047.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001047               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001047                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001047                                  untagged cDNA clone in CMV expression vector: NM_001047  Additional cDNA sequence: AF052126.1 AF113128.1 AK297208.1 AK297511.1 AK313070.1 AK315996.1 BC006373.2 BC007033.1 BC008673.2 BT006834.1 M32313.1 9 DOTS entries: DT.444034 DT.95292639 DT.92051061 DT.99946639 DT.100783025 DT.91874314 DT.120829790 DT.120829832 DT.95376374 24/102 AceView cDNA sequences (see all 102
):BE857592 BF508186 BC008673 AA488669 BG675027 BC006373 AA917839 BM783945 AF113128 BF968451 BX284105 AI363117 AU148545 BC007033 AU280630 BU838844 BV191614 BU195899 M32313 AI140805 BE252370 BX423623 AF052126 AA765264
highest scoring ESTs for SRD5A1:M32313 AA114145 AA193188 AA223485 AA251020 AA251021 AA263107 AA400662 AA400714 AA486052 Unigene Cluster for SRD5A1: Steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1) Hs.552 [show with all ESTs]Unigene Representative Sequence: NM_001047
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000274192
|
Expression for SRD5A1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| SRD5A1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for SRD5A1
1 / 2 / 3 7 probe-sets matching SRD5A1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: ACTTGAATTC
SOURCE GeneReport for Unigene cluster: Hs.552
Expression variation in blood from EXPOLDB for SRD5A1 UniProtKB/Swiss-Prot: S5A1_HUMAN, P18405Tissue specificity: Liver and prostate (at a low level) |
Orthologs for SRD5A1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for SRD5A1 gene from 5/11 species (see all 11
)
About this table Species with no ortholog for SRD5A1
ENSEMBL Gene Tree for SRD5A1 | Paralogs for SRD5A1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for SRD5A1 gene
- SRD5A22
Pseudogenes
- 1 related pseudogene
|
SNPs/Variants for SRD5A1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for SRD5A1 (up to first 250kb)
|
Disorders & Mutations for SRD5A1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 184753
10/76 Novoseek disease relationships for SRD5A1 gene (see all 76
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| benign prostatic hyperplasia |
94.21 |
170 |
8381804 (2), 8636334 (2), 16515494 (2), 12426860 (2) (see all 99) |
| pseudohermaphroditism male |
86.30 |
19 |
7584701 (2), 1879398 (1), 1944596 (1), 1505484 (1) (see all 15) |
| alopecia androgenetic |
83.08 |
15 |
8077349 (2), 9879479 (1), 9873170 (1), 11125319 (1) (see all 13) |
| prostate cancer |
77.80 |
143 |
8636334 (4), 18280514 (3), 1283894 (3), 16890642 (3) (see all 99) |
| virilization |
76.66 |
9 |
2327864 (1), 9039340 (1), 8784107 (1), 17218080 (1) (see all 9) |
| androgen insensitivity syndrome |
71.40 |
4 |
16148681 (1), 2173324 (1), 12403225 (1), 18717241 (1) |
| androgen insensitivity syndrome partial |
70.28 |
3 |
17973056 (1), 9329414 (1), 17627743 (1) |
| prostatic diseases |
68.74 |
7 |
17052442 (1), 8778238 (1), 18046919 (1), 19030020 (1) (see all 7) |
| genitalia external ambiguous |
68.44 |
1 |
9745434 (1) |
| prostatic hyperplasia |
67.81 |
7 |
9142509 (1), 19205388 (1), 12724020 (1), 12494605 (1) (see all 6) |
About this table
Genetic Association Database: SRD5A1 Human Genome Epidemiology Navigator: SRD5A1 (10 documents)
|
Medical News for SRD5A1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for SRD5A1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/662 PubMed articles for SRD5A1 gene (see all 662
):- Characterization and chromosomal mapping of a human steroid 5 alpha- reductase gene and pseudogene and mapping of the mouse homologue. (PubMed id 1686016)2, 3, 4 Jenkins E.P.... Russell D.W. (1991)
- New steroid 5alpha-reductase type I (SRD5A1) homologous sequences on human chromosomes 6 and 8. (PubMed id 11678334)1, 3, 4 Eminovic I....Komel R. (2001)
- Androgenic correlates of genetic variation in the gene encoding 5alpha-reductase type 1. (PubMed id 16155734)1, 3, 6 Ellis J.A....Harrap S.B. (2005)
- Gene analysis of steroid 5 alpha-reductase 1 in hyperandrogenic women. (PubMed id 16100771)1, 3, 6 Eminovic I....Heljic B. (2005)
- A case-based evaluation of SRD5A1, SRD5A2, AR, and ADRA1A as candidate genes for severity of BPH. (PubMed id 15136785)1, 3, 6 Klotsman M....Hartmann K.E. (2004)
- Analysis of genetic polymorphisms of steroid 5alpha-reductase type 1 and 2 genes in Korean men with androgenetic alopecia. (PubMed id 12670724)1, 3, 6 Ha S.J....Kim J.W. (2003)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning. (PubMed id 10931946)3, 4 Hu R.-M.... Chen J.-L. (2000)
- Structural and biochemical properties of cloned and expressed human and rat steroid 5 alpha-reductases. (PubMed id 2339109)3, 4 Andersson S. and Russell D.W. (1990)
- Variants in the 5alpha-reductase type 1 and type 2 genes are associated with polycystic ovary syndrome and the severity of hirsutism in affected women. (PubMed id 16849416)1, 3 Goodarzi M.O....Azziz R. (2006)
|
Search for SRD5A1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing SRD5A1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing SRD5A1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing SRD5A1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| NIEHS-SNPs | http://egp.gs.washington.edu/data/srd5a1/ | | Wikipedia | http://en.wikipedia.org/wiki/5_alpha_reductase |
|
| | | About This Section
| --
| Services for SRD5A1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for SRD5A1:

|
GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
|