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Aliases & Descriptions for SLC6A3
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| DAT 1, 2, 3 | | DAT1 2, 3, 5 |
| | | Descriptions |
|---|
| DA transporter 3 | | Solute carrier family 6 member 3 3 | | dopamine transporter 2 | solute carrier family 6 (neurotransmitter transporter, dopamine), member 3 2 | | variable number tandem repeat (VNTR) 2 |
|
| | Search outside databases for aliases for SLC6A3 genePrevious GC identifers: GC05P001491 GC05M001531 GC05M001425 GC05M001445 |
Summaries for SLC6A3(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for SLC6A3: The dopamine transporter (DAT1) mediates the active reuptake of dopamine from the synapse and is a principal regulator of dopaminergic neurotransmission. The DAT1 gene has been implicated in human disorders such as parkinsonism, Tourette syndrome, and substance abuse (Vandenbergh et al., 1992 [PubMed 1359373]).[supplied by OMIM] UniProtKB/Swiss-Prot: SC6A3_HUMAN, Q01959Function: Amine transporter. Terminates the action of dopamine by its high affinity sodium-dependent reuptake into presynaptic terminalsGene Wiki entry for SLC6A3 (Dopamine_transporter) |
Genomic Location for SLC6A3
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the SLC6A3 gene 
Entrez Gene cytogenetic band: 5p15.3 Ensembl cytogenetic band: 5p15.33 HGNC cytogenetic band: 5p15.3SLC6A3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure GeneLoc location for GC05M001423:
(about GC identifiers)
Start:
|
1,445,909 bp from pter |
End:
|
1,498,545 bp from pter |
Size:
|
52,637 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000005.8 NT_006576.15
| Proteins for SLC6A3
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: SC6A3_HUMAN, Q01959 (See
protein sequence)Recommended Name: Sodium-dependent dopamine transporter Size: 620 amino acids; 68495 Da
Subunit: Homooligomer; disulfide-linked. Interacts with PRKCABP and TGFB1I1
Subcellular location: Membrane; Multi-pass membrane protein
Miscellaneous: This protein is the target of psychomotor stimulants such as amphetamines or cocaine
Secondary accessions: Q14996Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_001035.1
ENSEMBL proteins: ENSP00000270349
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for SLC6A3:  | Invitrogen Antibodies for SLC6A3 |  | Millipore Mono- and Polyclonal Antibodies for the study of SLC6A3 |  | Sigma-Aldrich Antibodies for SLC6A3 |  | R&D Systems Antibodies for SLC6A3 (Dopamine Transporter) |  | Antibodies from Abcam (Dopamine Transporter), each with their AbpromiseSM |  | Monoclonal and Polyclonal Antibodies from Abnova (SLC6A3) |  | Novus Biologicals Antibody for SLC6A3 |
Assays for SLC6A3: | Protein
Domains/ Families for SLC6A3(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q01959
ProtoNet protein and cluster: Q01959 1 Blocks protein family: IPB002436 Dopamine neurotransmitter transporter signature
UniProtKB/Swiss-Prot: SC6A3_HUMAN, Q01959Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) family | Gene Function for SLC6A3
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001044
Applied Biosystems Silencer® siRNAs for SLC6A3
Sigma-Aldrich siRNA and siRNA Panels for SLC6A3  Sigma-Aldrich shRNA for SLC6A3  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001044                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001044                                  untagged cDNA clone in CMV expression vector: NM_001044 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001044
UniProtKB/Swiss-Prot: SC6A3_HUMAN, Q01959Function: Amine transporter. Terminates the action of dopamine by its high affinity sodium-dependent reuptake into presynaptic terminalsGenatlas biochemistry entry for SLC6A3:solute carrier family 6,member A3,neurotransmitter transporter,dopamine,unlikely involved in Gilles de la Tourette syndrome,inconsistent evidence for involvement in bipolar effective disorder11 MGI mutant phenotypes (inferred from 10 alleles ) (MGI details for Slc6a3):
3 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for SLC6A3
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 1 Sigma-Aldrich "Your Favorite Gene" Pathway for SLC6A3 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for SLC6A3 
5/32 Interacting proteins for SLC6A3 (ENSP000002703493 Q019592) via UniProtKB, MINT, and/or STRING (see all 32
)About this table
5/12 Gene Ontology (GO) biological process terms (links to tree view) (see all 12
): About this table
|
Drugs & Compounds for SLC6A3(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for SLC6A3 |
Compounds for SLC6A3 available from Tocris Bioscience About this table
10/17 Novoseek chemical compound relationships for SLC6A3 gene (see all 17
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| (123i)fp-cit |
92.60 |
38 |
9396871 (3), 11315592 (3), 9744331 (2), 10319746 (2) (see all 21) |
| (123i)-2beta-carbomethoxy-3beta-(4-iodophenyl)tropane |
91.13 |
19 |
8657833 (1), 8110440 (1), 11440745 (1), 15872345 (1) (see all 16) |
| 2beta-carbomethoxy-3beta-(4-iodophenyl)tropane |
86.94 |
17 |
7607268 (1), 8748670 (1), 10348466 (1), 7607266 (1) (see all 10) |
| tropane |
86.81 |
30 |
16385509 (3), 11714608 (2), 9880583 (2), 10881032 (1) (see all 20) |
| (123i)ipt |
82.87 |
7 |
14513291 (3), 8523122 (2), 15165667 (1), 9374337 (1) |
| gbr 12935 |
81.65 |
9 |
10585212 (1), 8941383 (1), 10952077 (1), 1987318 (1) (see all 7) |
| altropane |
77.20 |
5 |
9593103 (2), 11687754 (1), 17511972 (1) |
| 1 methyl 4 phenylpyridinium |
77.04 |
103 |
8667208 (5), 10517700 (4), 18342443 (3), 12495785 (3) (see all 31) |
| nisoxetine |
74.29 |
7 |
11959795 (1), 8523122 (1), 8848002 (1), 10541838 (1) (see all 5) |
| ipcit |
71.29 |
2 |
10755641 (1), 7698153 (1) |
About this table
1 PharmGKB drug compound relationship for SLC6A3 geneAbout this table
|
Transcripts for SLC6A3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001044
Sigma-Aldrich siRNA and siRNA Panels for SLC6A3  Sigma-Aldrich shRNA for SLC6A3  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001044 REFSEQ mRNAs for SLC6A3 gene: NM_001044.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001044               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001044                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001044                                  untagged cDNA clone in CMV expression vector: NM_001044  Additional cDNA sequence: AK310589.1 BC132977.1 BC133003.1 EF174603.1 L24178.1 M95167.1 M96670.1 S44626.1 S46955.1 1 DOTS entry: DT.308308 18 AceView cDNA sequences:M96670 AI375850 NM_001044 S46955 L24178 M95167 AI760659 AI769875 S44626 AI863737 AA912294 BF509749 AI091004 AI768774 AI949407 AU127295 AW887557 AI586989
highest scoring ESTs for SLC6A3:M95167 S46955 AA912294 AI091004 AI375850 AI586989 AI760659 AI768774 AI769875 AI863737 Unigene Cluster for SLC6A3: Solute carrier family 6 (neurotransmitter transporter, dopamine), member 3 Hs.406 [show with all ESTs]Unigene Representative Sequence: M95167
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000270349
|
Expression for SLC6A3
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| SLC6A3 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for SLC6A3
1 / 2 / 3 3 probe-sets matching SLC6A3 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GCTGTCCCCT
SOURCE GeneReport for Unigene cluster: Hs.406
Expression variation in blood from EXPOLDB for SLC6A3 |
Orthologs for SLC6A3
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for SLC6A3 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for SLC6A3
ENSEMBL Gene Tree for SLC6A3 | Paralogs for SLC6A3(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for SLC6A3 gene
- SLC6A42 SLC6A22
|
SNPs/Variants for SLC6A3(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for SLC6A3 (up to first 250kb)
|
Disorders & Mutations for SLC6A3
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 126455 disorders: 143465 188890 125480 10/84 Novoseek disease relationships for SLC6A3 gene (see all 84
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| parkinson disease |
87.40 |
288 |
9703165 (4), 17886297 (4), 11403185 (3), 9048712 (3) (see all 99) |
| attention-deficit hyperactivity disorder |
87.32 |
135 |
10609822 (3), 16526026 (2), 18174826 (2), 15572278 (2) (see all 91) |
| parkinsonism |
80.66 |
85 |
7695230 (4), 11315592 (3), 14531041 (2), 9399211 (2) (see all 57) |
| cocaine abuse |
71.66 |
26 |
8674469 (2), 10881032 (1), 11408518 (1), 17897630 (1) (see all 14) |
| cocaine addiction |
70.70 |
12 |
2111866 (1), 19226282 (1), 9466707 (1), 10375632 (1) (see all 10) |
| essential tremor |
69.83 |
19 |
17260170 (2), 11487195 (2), 14531042 (2), 18317299 (2) (see all 10) |
| multiple system atrophy |
67.53 |
18 |
14598060 (2), 11748733 (2), 14673877 (1), 19089314 (1) (see all 12) |
| tourette syndrome |
61.55 |
27 |
7653693 (3), 16969259 (3), 8825631 (2), 8725745 (2) (see all 14) |
| parkinsonism drug-induced |
60.89 |
3 |
19131852 (1), 17969308 (1) |
| movement disorders |
59.63 |
12 |
12971118 (2), 17398272 (2), 12411832 (1), 18638039 (1) (see all 9) |
About this table
6 PharmGKB disease relationships for SLC6A3 geneAbout this table
Human Gene Mutation Database: SLC6A3 Genetic Association Database: SLC6A3 Human Genome Epidemiology Navigator: SLC6A3 (249 documents)
|
Medical News for SLC6A3(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for SLC6A3 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/1155 PubMed articles for SLC6A3 gene (see all 1155
):- Human dopamine transporter gene: coding region conservation among normal, Tourette's disorder, alcohol dependence and attention-deficit hyperactivity disorder populations. (PubMed id 10889531)1, 3, 4, 7 Vandenbergh D.J.... Uhl G.R. (2000)
- Dopamine transporter gene and response to methylphenidate in attention-deficit/hyperactivity disorder. (PubMed id 12172219)3, 6, 7 Roman T....Hutz M.H. (2002)
- Association of attention-deficit disorder and the dopamine transporter gene. (PubMed id 7717410)1, 3, 7 Cook E.H....Leventhal B.L. (1995)
- Cloning, pharmacological characterization, and chromosome assignment of the human dopamine transporter. (PubMed id 1406597)2, 3, 4 Giros B....Caron M.G. (1992)
- Increased dopamine transporter availability associated with the 9-repeat allele of the SLC6A3 gene. (PubMed id 15872345)1, 3, 6 van Dyck C.H....Gelernter J. (2005)
- The multiple LIM domain-containing adaptor protein Hic-5 synaptically colocalizes and interacts with the dopamine transporter. (PubMed id 12177201)1, 3, 4 Carneiro A.M.D.... Torres G.E. (2002)
- Dissecting the attention deficit hyperactivity disorder (ADHD) phenotype: sustained attention, response variability and spatial attentional asymmetries in relation to dopamine transporter (DAT1) genotype. (PubMed id 16168728)1, 3, 6 Bellgrove M.A....Robertson I.H. (2005)
- Dopamine transporter (SLC6A3) 5' region haplotypes significantly affect transcriptional activity in vitro but are not associated with Parkinson's disease. (PubMed id 16041244)1, 3, 6 Kelada S.N....Costa L.G. (2005)
- Association study of dopamine transporter gene and schizophrenia in Korean population using multiple single nucleotide polymorphism markers. (PubMed id 15380858)1, 3, 6 Jeong S.H....Kim Y.S. (2004)
- [Association studies of dopamine D4 receptor gene and dopamine transporter gene polymorphisms in Han Chinese patients with attention deficit hyperactivity disorder] (PubMed id 12947560)1, 3, 6 Qian Q....Zhou R. (2003)
|
Search for SLC6A3
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing SLC6A3
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing SLC6A3
(According to HUGE)
About This Section
| -- |
Specialized Databases showing SLC6A3(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| NIEHS-SNPs | http://egp.gs.washington.edu/data/slc6a3/ | | Wikipedia | http://en.wikipedia.org/wiki/Dopamine_transporter |
|
| | | About This Section
| --
| Services for SLC6A3(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for SLC6A3:

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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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