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Aliases & Descriptions for SLC6A2
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| NAT1 2, 3, 5 | | NET 2, 3 | | NET1 2, 3, 5 | | SLC6A5 2, 3 |
| | | Descriptions |
|---|
| Norepinephrine transporter 2, 3 | | Solute carrier family 6 member 2 2, 3 | | noradrenaline transporter 2 | solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2 2 | solute carrier family 6 (neurotransmitter transporter, norepinephrine), member 5 2 |
|
| | Search outside databases for aliases for SLC6A2 genePrevious GC identifers: GC16M046129 GC16P055745 GC16P055428 GC16P055469 |
Summaries for SLC6A2(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for SLC6A2: The SLC6A2 gene encodes a norepinephrine (noradrenaline) transporter, which is responsible for reuptake of norepinephrine into presynaptic nerve terminals and is a regulator of norepinephrine homeostasis (Kim et al., 2006 [PubMed 17146058]).[supplied by OMIM] UniProtKB/Swiss-Prot: SC6A2_HUMAN, P23975Function: Amine transporter. Terminates the action of noradrenaline by its high affinity sodium-dependent reuptake into presynaptic terminalsGene Wiki entry for SLC6A2 (Norepinephrine_transporter) |
Genomic Location for SLC6A2
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the SLC6A2 gene 
Entrez Gene cytogenetic band: 16q12.2 Ensembl cytogenetic band: 16q12.2 HGNC cytogenetic band: 16q12.2SLC6A2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 16 GeneLoc Exon Structure GeneLoc location for GC16P054247:
(about GC identifiers)
Start:
|
54,248,057 bp from pter |
End:
|
54,296,685 bp from pter |
Size:
|
48,629 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000016.8 NT_010498.15
| Proteins for SLC6A2
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: SC6A2_HUMAN, P23975 (See
protein sequence)Recommended Name: Sodium-dependent noradrenaline transporter Size: 617 amino acids; 69332 Da
Subunit: Interacts with PRKCABP
Subcellular location: Membrane; Multi-pass membrane protein
Miscellaneous: This protein is the target of psychomotor stimulants such as amphetamines or cocainePost-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_001034.1
ENSEMBL proteins: ENSP00000369237 ENSP00000219833
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for SLC6A2: Assays for SLC6A2: | Protein
Domains/ Families for SLC6A2(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P23975
ProtoNet protein and cluster: P23975 1 Blocks protein family: IPB002435 Noradrenaline neurotransmitter transporter signature
UniProtKB/Swiss-Prot: SC6A2_HUMAN, P23975Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) family | Gene Function for SLC6A2
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001043
Applied Biosystems Silencer® siRNAs for SLC6A2
Sigma-Aldrich siRNA and siRNA Panels for SLC6A2  Sigma-Aldrich shRNA for SLC6A2  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001043                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001043                                  untagged cDNA clone in CMV expression vector: NM_001043 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001043
UniProtKB/Swiss-Prot: SC6A2_HUMAN, P23975Function: Amine transporter. Terminates the action of noradrenaline by its high affinity sodium-dependent reuptake into presynaptic terminalsGenatlas biochemistry entry for SLC6A2:solute carrier family 6,member 2,neurotransmitter transporter,noradrenalin/morepinephrine5 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Slc6a2):
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for SLC6A2
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for SLC6A2 
5/15 Interacting proteins for SLC6A2 (P239752 ENSP000002198333) via UniProtKB, MINT, and/or STRING (see all 15
)About this table
3 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for SLC6A2(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for SLC6A2 10/37 Novoseek chemical compound relationships for SLC6A2 gene (see all 37
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| nisoxetine |
90.20 |
16 |
8848002 (2), 10447954 (2), 8218295 (1), 16361258 (1) (see all 11) |
| lortalamine |
87.67 |
7 |
15914010 (2), 15998285 (1), 17073682 (1) |
| m-tyramine |
79.44 |
2 |
9681456 (1), 12814837 (1) |
| 6-fluorodopamine |
77.09 |
4 |
11107129 (2), 10899926 (1) |
| catecholamine |
68.17 |
14 |
16573647 (2), 18674600 (1), 8794928 (1), 7576974 (1) (see all 10) |
| indatraline |
66.66 |
1 |
11123996 (1) |
| diphenyl sulfide |
61.34 |
1 |
11881994 (1) |
| tropane |
58.66 |
2 |
11714608 (1) |
| 1 methyl 4 phenylpyridinium |
55.44 |
8 |
8667208 (4), 10494878 (1), 10411589 (1), 7700252 (1) |
| amine |
51.23 |
10 |
11606618 (2), 12787070 (1), 12954796 (1), 16885432 (1) (see all 7) |
About this table
|
Transcripts for SLC6A2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001043
Sigma-Aldrich siRNA and siRNA Panels for SLC6A2  Sigma-Aldrich shRNA for SLC6A2  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001043 REFSEQ mRNAs for SLC6A2 gene: NM_001043.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001043               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001043                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001043                                  untagged cDNA clone in CMV expression vector: NM_001043  Additional cDNA sequence: AB022846.1 AB022847.1 AK301811.1 AK310410.1 AK312793.1 BC000563.2 BC039309.1 BC060831.1 CR611590.1 M65105.1 9 DOTS entries: DT.100748456 DT.40281724 DT.111177 DT.95281015 DT.91706962 DT.100711624 DT.100741072 DT.120668967 DT.100705791 24/74 AceView cDNA sequences (see all 74
):NM_001043 CB989013 AI399889 BX479214 AA610011 BC000563 M65105 R21410 CB989377 BC060831 BQ026494 BX396703 AI765218 BF448911 BX117731 AA369327 BQ022169 CB991203 CB990905 BE313934 BQ022097 BV199236 BF445572 BF111741
highest scoring ESTs for SLC6A2:AB022846 AB022847 AI247485 AI765218 BC000563 BC039309 BC060831 BE313934 BI199432 BI199870 Unigene Cluster for SLC6A2: Solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2 Hs.78036 [show with all ESTs]Unigene Representative Sequence: NM_001043
GeneLoc Exon Structure
4 Alternative Splicing Database (ASD) splice patterns (SP) for SLC6A2
| ExUns: | 1 | ^ | 2 | ^ | 3a | · | 3b | ^ | 4 | ^ | 5a | · | 5b | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13a | · | 13b | ^ | 14 | ^ | 15 | ^ | 16 | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for SLC6A2
2 Ensembl transcripts including schematic representations: ENST00000379906
ENST00000219833
|
Expression for SLC6A2
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| SLC6A2 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for SLC6A2
1 / 2 / 3 13 probe-sets matching SLC6A2 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.78036
Expression variation in blood from EXPOLDB for SLC6A2 |
Orthologs for SLC6A2
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for SLC6A2 gene from 5/10 species (see all 10
)
About this table Species with no ortholog for SLC6A2
ENSEMBL Gene Tree for SLC6A2 | Paralogs for SLC6A2(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for SLC6A2 gene
- SLC6A32 SLC6A42
|
SNPs/Variants for SLC6A2(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for SLC6A2 (up to first 250kb)
|
Disorders & Mutations for SLC6A2
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 163970 disorders: 604715 UniProtKB/Swiss-Prot: SC6A2_HUMAN, P23975
Defects in SLC6A2 are a cause of orthostatic intolerance (OI) [MIM:604715]. OI is a syndrome characterized by lightheadedness, fatigue, altered mentation and syncope. It is associated with postural tachycardia. Plasma norepinephrine concentration is abnormally high10/37 Novoseek disease relationships for SLC6A2 gene (see all 37
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| attention-deficit hyperactivity disorder |
68.61 |
21 |
16969268 (2), 12716261 (1), 16896954 (1), 18480678 (1) (see all 14) |
| mitral valve prolapse |
54.15 |
14 |
12391111 (2), 11804991 (2), 12805287 (2), 14726430 (1) (see all 9) |
| autonomic disorder |
52.39 |
1 |
12805287 (1) |
| major depression |
48.54 |
46 |
10512149 (4), 11927173 (4), 15118352 (4), 17353941 (4) (see all 12) |
| pheochromocytoma |
46.57 |
15 |
17102094 (3), 16047163 (2), 19088695 (2), 12574193 (1) (see all 7) |
| neuroendocrine tumors |
43.27 |
5 |
15154969 (1), 17979223 (1), 18196892 (1) |
| panic disorder |
39.32 |
9 |
15722184 (4), 16785272 (1), 12401556 (1) |
| mood disorders |
35.86 |
5 |
11927173 (1), 11606618 (1), 17654409 (1) |
| oppositional defiant disorder |
21.95 |
1 |
15801334 (1) |
| tachycardia |
19.22 |
3 |
15946904 (1), 11458707 (1) |
About this table
Human Gene Mutation Database: SLC6A2 Genetic Association Database: SLC6A2 Human Genome Epidemiology Navigator: SLC6A2 (57 documents)
|
Medical News for SLC6A2(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for SLC6A2 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/392 PubMed articles for SLC6A2 gene (see all 392
):- Orthostatic intolerance and tachycardia associated with norepinephrine-transporter deficiency. (PubMed id 10684912)1, 3, 4, 6 Shannon J.R.... Robertson D. (2000)
- Expression cloning of a cocaine- and antidepressant-sensitive human noradrenaline transporter. (PubMed id 2008212)2, 3, 4 Pacholczyk T.... Amara S.G. (1991)
- Norepinephrine transporter (NET) promoter and 5'-UTR polymorphisms: association analysis in panic disorder. (PubMed id 15722184)1, 3, 6 Lee Y.J....Deckert J. (2005)
- Association between norepinephrine transporter gene polymorphism and major depression. (PubMed id 15118352)1, 3, 6 Ryu S.H....Lee M.S. (2004)
- A screen of candidate genes and influence of beta2-adrenergic receptor genotypes in postural tachycardia syndrome. (PubMed id 15946904)1, 3, 6 Nickander K.K....Low P.A. (2005)
- Norepinephrine transporter gene (NET) variants in patients with panic disorder. (PubMed id 12401556)1, 3, 6 Sand P.G....Deckert J. (2002)
- Prediction of antidepressant response to milnacipran by norepinephrine transporter gene polymorphisms. (PubMed id 15337646)1, 3, 6 Yoshida K....Nemeroff C.B. (2004)
- Association of distinct alpha(2) adrenoceptor and serotonin transporter polymorphisms with constipation and somatic symptoms in functional gastrointestinal disorders. (PubMed id 15138209)1, 3, 6 Kim H.J....Urrutia R. (2004)
- Positive association between T-182C polymorphism in the norepinephrine transporter gene and susceptibility to major depressive disorder in a japanese population. (PubMed id 15539861)1, 3, 6 Inoue K....Suzuki T. (2004)
- A mutation in the human norepinephrine transporter gene (SLC6A2) associated with orthostatic intolerance disrupts surface expression of mutant and wild-type transporters. (PubMed id 12805287)1, 3, 6 Hahn M.K....Blakely R.D. (2003)
|
Search for SLC6A2
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing SLC6A2
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing SLC6A2
(According to HUGE)
About This Section
| -- |
Specialized Databases showing SLC6A2(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| GeneReviews | http://www.genetests.org/query?gene=SLC6A5 |
|
| | | About This Section
| --
| Services for SLC6A2(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for SLC6A2:

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Incremental update: 13 Oct 2009
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