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Aliases & Descriptions for PDE5A
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases CGB-PDE 2 , 3 CN5A 2 EC 3.1.4.35 3 PDE5 2 , 3 PDE5A1 2
Descriptions cGMP-binding cGMP-specific 3',5'-cyclic nucleotide phosphodiesterase 2 cGMP-binding cGMP-specific phosphodiesterase 3 phosphodiesterase 5A 2 phosphodiesterase 5A, cGMP-specific 2
Search outside databases for aliases for PDE5A genePrevious GC identifers: GC04M121176 GC04M120811 GC04M120877 GC04M120878 GC04M120776
Summaries for PDE5A (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for PDE5A : This gene encodes a cGMP-binding, cGMP-specific phosphodiesterase, a member of the cyclicnucleotide phosphodiesterase family. This phosphodiesterase specifically hydrolyzes cGMP to5'-GMP. It is involved in the regulation of intracellular concentrations of cyclicnucleotides and is important for smooth muscle relaxation in the cardiovascular system.Alternative splicing of this gene results in three transcript variants encoding distinct isoforms.[provided by RefSeq] UniProtKB/Swiss-Prot: PDE5A_HUMAN, O76074 Function : Plays a role in signal transduction by regulating the intracellular concentration ofcyclic nucleotides. This phosphodiesterase catalyzes the specific hydrolysis of cGMP to 5'-GMP
Gene Wiki entry for PDE5A (CGMP_specific_phosphodiesterase_type_5)
Genomic Location for PDE5A
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the PDE5A gene Entrez Gene cytogenetic band: 4q25-q27 Ensembl cytogenetic band: 4q27 HGNC cytogenetic band: 4q27 PDE5A Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 4 GeneLoc Exon Structure
GeneLoc location for GC04M120698:
(about GC identifiers )
Start:
120,634,998 bp from pter
End:
120,769,429 bp from pter
Size:
134,432 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000004.10 NT_016354.18 Proteins for PDE5A
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: PDE5A_HUMAN, O76074 (See
protein sequence )Recommended Name: cGMP-specific 3',5'-cyclic phosphodiesterase Size : 875 amino acids; 100013 Da
Cofactor : Divalent cations. Zinc ions yields maximum activity. Manganese, magnesium and cobalt alsosupport catalysis but at much higher concentrations
PDB structures from and Proteopedia : 1RKP (3D)
 1T9R (3D)
 1T9S (3D)
 1TBF (3D)
 1UDT (3D)
 1UDU (3D)
 1UHO (3D)
 1XOZ (3D)
 1XP0 (3D)
 2CHM (3D)
 2H40 (3D)
 2H42 (3D)
 2H44 (3D)
 3B2R (3D)
 3BJC (3D)
 
Secondary accessions : A0AV69 A8K2C4 O75026 O75887 Q86UI0 Q86V66 Q9Y6Z6Alternative splicing : 2 isoforms : O76074-1 O76074-2
Post-translational modifications:
Phosphorylation is regulated by binding of cGMP to the two allosteric sites (By similarity)1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_001074.2 NP_236914.2 NP_246273.2 ENSEMBL proteins: ENSP00000348623 ENSP00000377957 ENSP00000347046 ENSP00000264805 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for PDE5A: Assays for PDE5A:
Protein
Domains/ Families for PDE5A(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry O76074 ProtoNet protein and cluster: O76074
1 Blocks protein family : IPB003018 GAF domain UniProtKB/Swiss-Prot: PDE5A_HUMAN, O76074 Domain : Composed of a C-terminal catalytic domain containing two putative divalent metal sites andan N-terminal regulatory domain which contains two homologous allosteric cGMP-binding regions, Aand B Similarity : Belongs to the cyclic nucleotide phosphodiesterase familySimilarity : Contains 2 GAF domains
Gene Function for PDE5A
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_033430 Applied Biosystems Silencer ® siRNAs for PDE5A Sigma-Aldrich siRNA and siRNA Panels for PDE5A Sigma-Aldrich shRNA for PDE5A Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001083                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001083                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_001083  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001083 UniProtKB/Swiss-Prot: PDE5A_HUMAN, O76074 Function : Plays a role in signal transduction by regulating the intracellular concentration ofcyclic nucleotides. This phosphodiesterase catalyzes the specific hydrolysis of cGMP to 5'-GMP Catalytic activity : Guanosine 3',5'-cyclic phosphate + H(2)O = guanosine 5'-phosphateEnzyme regulation : Sildenafil (Viagra) is a highly selective and potent inhibitor of PDE5A and iseffective in the treatment of penile erectile dysfunction. Also inhibited by zaprinast Enzyme Number (IUBMB): EC 3.1.4.35
Genatlas biochemistry entry for PDE5A :cGMP specific nucleotide phosphodiesterase,class V,alpha subunit,two alternatively spliced formsA1,A2,100kDa,highly expressed in tissues,aortic smooth muscle cells,heart,placenta,skeletalmuscle,pancreas,brain,liver and lung 1 MGI phenotypic allele for Pde5a (no phenotypes)5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6
):
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Pathways & Interactions for PDE5A
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for PDE5A (Your Favorite Gene powered by Ingenuity) UniProtKB/Swiss-Prot: PDE5A_HUMAN, O76074 Pathway : Purine metabolism; cGMP degradation; GMP from cGMP: step 1/1
Gene Network CentralTM Interacting Genes and Proteins Network for PDE5A 5/72 Interacting proteins for PDE5A (ENSP00000347046 3 ) via UniProtKB, MINT, and/or STRING (see all 72
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0007165 signal transduction
NAS -- GO:0009187 cyclic nucleotide metabolic process
NAS --
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Drugs & Compounds for PDE5A (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for PDE5A
Sigma-Aldrich Small Molecules for PDE5A:Inhibitor
Compounds for PDE5A available from Tocris Bioscience About this table 10/21 Novoseek chemical compound relationships for PDE5A gene (see all 21
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
cgmp
89.95
587
12554648 (6), 9445376 (5), 12761347 (5), 10679826 (5) (see all 99 )
nitric oxide
69.63
163
17275845 (5), 15295092 (5), 12604588 (5), 15640438 (3) (see all 71 )
motapizone
65.08
1
11834608 (1)
guanylate
63.39
5
12437503 (2), 18761597 (1), 15312978 (1), 15475488 (1)
roflumilast
46.24
2
15576036 (1), 11834608 (1)
cyclic amp
44.32
5
11162575 (1), 18467075 (1), 11358813 (1), 15045518 (1)
8-bromo cgmp
44.20
6
16751794 (1), 17929303 (1), 9486247 (1)
nitrate
40.86
16
18302448 (4), 14642699 (1), 16387566 (1), 11351772 (1) (see all 8 )
erythro-9-(2 hydroxy 3-nonyl)adenine
40.24
2
17308037 (1), 15265792 (1)
forskolin
21.06
1
7476903 (1)
About this table
Transcripts for PDE5A(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_033430 Sigma-Aldrich siRNA and siRNA Panels for PDE5A Sigma-Aldrich shRNA for PDE5A Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001083 NM_033430 NM_033437
REFSEQ mRNAs for PDE5A gene (3 alternative transcripts): NM_001083.3 NM_033430.2 NM_033437.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001083 NM_033430 NM_033437
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001083                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001083                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_001083  
Additional cDNA sequence: AB015656.1 AF043731.1 AF043732.1 AF155193.1 AJ004865.1 AK290189.1 AY264918.1 AY266363.1 BC126233.1
10 DOTS entries : DT.100754842 DT.315121 DT.97786450 DT.97791706 DT.40224319 DT.205491 DT.404201 DT.95176543 DT.97813364 DT.99957235
24/142 AceView cDNA sequences (see all 142
):BX099915 AI814041 NM_033437 BU683142 AL701932 AA653566 BU146143 CA437264 AL701305 BM978332 AA461399 BM711448 AW130701 CF541229 CA443303 AW152010 H90636 BU616900 AY264918 BF222313 AA861242 AF155192 BF221547 AA382741
highest scoring ESTs for PDE5A :AF043731 AJ004865 BF821833 AA317061 AA332394 AA447619 AB015656 AF043732 AF155192 AI313117
Unigene Clusters for PDE5A: Phosphodiesterase 5A, cGMP-specific Hs.587281 [show with all ESTs ] , Hs.647971 [show with all ESTs ] Unigene Representative Sequences: XM_001724855 , NM_001083 GeneLoc Exon Structure 4 Ensembl transcripts including schematic representations : ENST00000356278
ENST00000394439
ENST00000354960
ENST00000264805
Expression for PDE5A
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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PDE5A expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for PDE5A 1 / 2 / 3
12 probe-sets matching PDE5A gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CTTTGTAAAASOURCE GeneReport for Unigene clusters: Hs.587281 Hs.647971 Expression variation in blood from EXPOLDB for PDE5A
UniProtKB/Swiss-Prot: PDE5A_HUMAN, O76074 Tissue specificity : Expressed in aortic smooth muscle cells, heart, placenta, skeletal muscle andpancreas and, to a much lesser extent, in brain, liver and lung
Orthologs for PDE5A
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for PDE5A gene from 5/10 species (see all 10
)
About this table Species with no ortholog for PDE5A ENSEMBL Gene Tree for PDE5A Paralogs for PDE5A (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for PDE5A gene PDE11A 2
SNPs/Variants for PDE5A (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for PDE5A (up to first 250kb)
Disorders & Mutations for PDE5A
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 603310 10/49 Novoseek disease relationships for PDE5A gene (see all 49
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
erectile dysfunction
95.64
239
17253475 (5), 17948826 (3), 17076943 (3), 18674473 (3) (see all 99 )
hypertension pulmonary
69.70
37
17305584 (2), 19416631 (2), 15907910 (2), 15817798 (2) (see all 29 )
priapism
64.04
25
17100941 (5), 12853767 (3), 16698365 (3), 19267844 (2) (see all 8 )
benign prostatic hyperplasia
63.47
9
16387566 (1), 16956354 (1), 17329019 (1), 18761597 (1) (see all 7 )
naion
62.48
30
17076943 (4), 18528398 (4), 17947271 (3), 17969789 (1) (see all 7 )
hypogonadism
61.83
8
16939550 (2), 17309554 (2), 16422803 (1), 18641415 (1)
hypertension arterial
59.56
25
17606845 (2), 15907910 (2), 18689467 (2), 15466636 (1) (see all 19 )
female sexual arousal disorder
53.53
1
16247643 (1)
peyronie disease
52.34
2
17942972 (1), 16885993 (1)
impotence
51.70
4
10541153 (1), 18778098 (1), 12789393 (1), 17017938 (1) (see all 5 )
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Medical News for PDE5A (Possibly Related Articles in
Doctor's Guide )
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Publications for PDE5A (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/417 PubMed articles for PDE5A gene (see all 417
): Isolation and characterization of cDNAs encoding PDE5A, a human cGMP- binding, cGMP-specific 3',5'-cyclic nucleotide phosphodiesterase. (PubMed id 9714779) 1, 2, 3, 4 Loughney K.... Ferguson K. (1998) Molecular cloning and expression of human cGMP-binding cGMP-specific phosphodiesterase. (PubMed id 9642111) 2, 3, 4 Stacey P.... Phillips S.C. (1998) Expression, structure and chromosomal localization of the human cGMP- binding cGMP-specific phosphodiesterase PDE5A gene. (PubMed id 9716380) 1, 3, 4 Yanaka N.... Omori K. (1998) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Structure of the catalytic domain of human phosphodiesterase 5 with bound drug molecules. (PubMed id 12955149) 3, 4 Sung B.-J.... Cho J.M. (2003) Multiple cyclic nucleotide phosphodiesterases in human trabecular meshwork cells. (PubMed id 10393044) 3, 4 Zhou L.... Potter D.E. (1999) PDE5 is converted to an activated state upon cGMP binding to the GAF A domain. (PubMed id 12554648) 1, 3 Rybalkin S.D....Beavo J.A. (2003) Genomic origin and transcriptional regulation of two variants of cGMP-binding cGMP-specific phosphodiesterases. (PubMed id 10411650) 1, 3 Kotera J....Omori K. (1999) Compartmentation and compartment-specific regulation of PDE5 by protein kinase G allows selective cGMP-mediated regulation of platelet functions. (PubMed id 18757735) 1, 3 Wilson L.S....Maurice D.H. (2008) The gamma subunit of the rod photoreceptor cGMP phosphodiesterase can modulate the proteolysis of two cGMP binding cGMP-specific phosphodiesterases (PDE6 and PDE5) by caspase-3. (PubMed id 11602184) 1, 3 Frame M....Pyne N.J. (2001)
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Genome Databases showing PDE5A
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing PDE5A
(According to HUGE )
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Specialized Databases showing PDE5A (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for PDE5A (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for PDE5A:
Antibodies & Assays for PDE5A   (PDE5)
Tocris compounds for PDE5A
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009