PDE4B Gene
protein-coding GIFtS : 65
GC01P065970
phosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila) (Previous names: phosphodiesterase 4B, cAMP-specific (dunce (Drosophila)-homolog phosphodiesterase E4) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbol: DPDE4 )
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Aliases & Descriptions for PDE4B
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases DKFZp686F2182 2 DPDE4 2 , 3 , 5 EC 3.1.4.17 3 MGC126529 2 OTTHUMP00000010652 2 OTTHUMP00000010656 2 OTTHUMP00000046896 2 PDE32 3 PDE4B5 2 PDEIVB 2
Descriptions cAMP-specific 3',5'-cyclic phosphodiesterase 4B 2 cAMP-specific phosphodiesterase-4 B isoform 2 dunce-like phosphodiesterase E4 2 phosphodiesterase 4B 2 phosphodiesterase 4B, cAMP-specific (dunce 2 phosphodiesterase 4B, cAMP-specific (dunce (Drosophila)-homolog phosphodiesterase E4) 1 phosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila) 2
Search outside databases for aliases for PDE4B genePrevious GC identifers: GC01P066339 GC01P065729 GC01P065615 GC01P065628
Summaries for PDE4B (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for PDE4B : This gene is a member of the type IV, cyclic AMP (cAMP)-specific, cyclic nucleotidephosphodiesterase (PDE) family. Cyclic nucleotides are important second messengers that regulateand mediate a number of cellular responses to extracellular signals, such as hormones, light, andneurotransmitters. The cyclic nucleotide phosphodiesterases (PDEs) regulate the cellularconcentrations of cyclic nucleotides and thereby play a role in signal transduction. This geneencodes a protein that specifically hydrolyzes cAMP. Altered activity of this protein has beenassociated with schizophrenia and bipolar affective disorder. Alternate transcriptional splicevariants, encoding different isoforms, have been characterized. [provided by RefSeq] UniProtKB/Swiss-Prot: PDE4B_HUMAN, Q07343 Function : May be involved in mediating central nervous system effects of therapeutic agents rangingfrom antidepressants to antiasthmatic and anti-inflammatory agents
Gene Wiki entry for PDE4B
Genomic Location for PDE4B
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the PDE4B gene Entrez Gene cytogenetic band: 1p31 Ensembl cytogenetic band: 1p31.3 HGNC cytogenetic band: 1p31 PDE4B Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01P065970:
(about GC identifiers )
Start:
66,030,781 bp from pter
End:
66,612,850 bp from pter
Size:
582,070 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000001.9 NT_032977.8 Proteins for PDE4B
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: PDE4B_HUMAN, Q07343 (See
protein sequence )Recommended Name: cAMP-specific 3',5'-cyclic phosphodiesterase 4B Size : 736 amino acids; 83343 Da
PDB structures from and Proteopedia : 1F0J (3D)
 1JP1 (3D)
 1JP2 (3D)
 1RO6 (3D)
 1RO9 (3D)
 1ROR (3D)
 1TB5 (3D)
 1XLX (3D)
 1XLZ (3D)
 1XM4 (3D)
 1XM6 (3D)
 1XMU (3D)
 1XMY (3D)
 1XN0 (3D)
 1XOS (3D)
 1XOT (3D)
 1Y2H (3D)
 1Y2J (3D)
 2CHM (3D)
 2QYL (3D)
 
Secondary accessions : O15443Alternative splicing : 3 isoforms : Q07343-1 Q07343-2 Q07343-3 (Additional isoforms seem to exist)
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (4 alternative transcripts):
NP_001032416.1 NP_001032417.1 NP_001032418.1 NP_002591.2 ENSEMBL proteins: ENSP00000360087 ENSP00000342637 ENSP00000332116 ENSP00000360088 ENSP00000360084 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 4 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for PDE4B: Assays for PDE4B:
Protein
Domains/ Families for PDE4B(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q07343 ProtoNet protein and cluster: Q07343
UniProtKB/Swiss-Prot: PDE4B_HUMAN, Q07343 Similarity : Belongs to the cyclic nucleotide phosphodiesterase family
Gene Function for PDE4B
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_002600 Applied Biosystems Silencer ® siRNAs for PDE4B Sigma-Aldrich siRNA and siRNA Panels for PDE4B Sigma-Aldrich shRNA for PDE4B Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_001037339                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_001037339                                  untagged cDNA clones in CMV expression vector (see all 5 ): AK000989  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002600 UniProtKB/Swiss-Prot: PDE4B_HUMAN, Q07343 Function : May be involved in mediating central nervous system effects of therapeutic agents rangingfrom antidepressants to antiasthmatic and anti-inflammatory agents Catalytic activity : Adenosine 3',5'-cyclic phosphate + H(2)O = adenosine 5'-phosphateEnzyme regulation : Inhibited by rolipramEnzyme Number (IUBMB): EC 3.1.4.17
Genatlas biochemistry entry for PDE4B :cAMP specific nucleotide phosphodiesterase class IV,B,with homology to Drosophila duncegene,involved in signal transduction
4 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Pde4b) :2 Gene Ontology (GO) molecular function terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0004115 3',5'-cyclic-AMP phosphodiesterase activity
TAS 9371714 GO:0016787 hydrolase activity
IEA --
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Pathways & Interactions for PDE4B
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/7 Sigma-Aldrich "Your Favorite Gene" Pathways for PDE4B (Your Favorite Gene powered by Ingenuity) (see all 7
) UniProtKB/Swiss-Prot: PDE4B_HUMAN, Q07343 Pathway : Purine metabolism; cAMP degradation; AMP from cAMP: step 1/1
Gene Network CentralTM Interacting Genes and Proteins Network for PDE4B 5/74 Interacting proteins for PDE4B (ENSP00000332116 3 ) via UniProtKB, MINT, and/or STRING (see all 74
)About this table 1 Gene Ontology (GO) biological process term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0007165 signal transduction
IEA --
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Drugs & Compounds for PDE4B (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for PDE4B
Sigma-Aldrich Small Molecules for PDE4B:Inhibitor
Compounds for PDE4B available from Tocris Bioscience About this table 2 Novoseek chemical compound relationships for PDE4B gene
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Transcripts for PDE4B(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_002600 Sigma-Aldrich siRNA and siRNA Panels for PDE4B Sigma-Aldrich shRNA for PDE4B Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001037339 NM_001037340 NM_001037341 NM_002600
REFSEQ mRNAs for PDE4B gene (4 alternative transcripts): NM_001037339.1 NM_001037340.1 NM_001037341.1 NM_002600.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001037339 NM_001037340 NM_001037341 NM_002600
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_001037339                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_001037339                                  untagged cDNA clones in CMV expression vector (see all 5 ): AK000989  
Additional cDNA sequence: AB209081.1 AK289969.1 AK290006.1 AK290206.1 AK294441.1 BC036108.1 BC046161.1 BC071607.1 BC101480.1 BC105040.1 CR749667.1 EF595686.1 L12685.1 L12686.1 L20966.1 M97515.1 U85048.1
23 DOTS entries : DT.100741919 DT.100741918 DT.121644658 DT.40259510 DT.442607 DT.100804857 DT.121331236 DT.95371539 DT.92037235 DT.121331177 DT.92025734 DT.100691054 DT.121331222 DT.91986363 DT.121331184 DT.121331223 DT.121331224 DT.121331225 DT.121331230 DT.121331245 DT.97825163 DT.99955375 DT.40118505
24/144 AceView cDNA sequences (see all 144
):AI684715 BF957513 AL133915 AA206316 AA769288 AI830034 BF934703 CD721828 BU616750 AU118147 AA582841 BU170024 BM760114 AW571513 CR749667 BX951946 AW086078 AA805258 AA453293 AK000989 BP344045 BM759232 U85048 BG218299
highest scoring ESTs for PDE4B :AA056218 AA056219 AA206316 AA206317 AA226393 AA279642 AA280008 AA280532 AA291939 AA320556
Unigene Cluster for PDE4B: Phosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila) Hs.198072 [show with all ESTs ] Unigene Representative Sequence: NM_001037341 GeneLoc Exon Structure 5/10 Alternative Splicing Database (ASD) splice patterns (SP) for PDE4B (see all 10
) ExUns: 1 ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5 ^ 6a · 6b · 6c ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12 ^ 13a · 13b ^ 14a · 14b · 14c ^ 15 ^ 16 ^ 17 ^ 18a · SP1 :     -   -   -   -   -               -   -     -   -                 -   SP2 :           -   -               -   -     -   -                 -   SP3 :                                 -   -                 -   SP4 :                                                     SP5 :                                   -                  
ExUns: 18b ^ 19a · 19b ^ 20 ^ 21a · 21b · 21c SP1 :     -           SP2 :     -           SP3 :     -           SP4 :               SP5 :              
About this scheme ECgene alternative splicing isoforms for PDE4B 5 Ensembl transcripts including schematic representations : ENST00000371048
ENST00000341517
ENST00000329654
ENST00000371049
ENST00000371045
Expression for PDE4B
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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PDE4B expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for PDE4B 1 / 2 / 3
7 probe-sets matching PDE4B gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.198072 Expression variation in blood from EXPOLDB for PDE4B
UniProtKB/Swiss-Prot: PDE4B_HUMAN, Q07343 Tissue specificity : Expressed in brain, heart, lung and skeletal muscle
Orthologs for PDE4B
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for PDE4B gene from 5/11 species (see all 11
)
About this table Species with no ortholog for PDE4B ENSEMBL Gene Tree for PDE4B Paralogs for PDE4B (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for PDE4B gene PDE4D 2 PDE4C 2 PDE4A 2
SNPs/Variants for PDE4B (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for PDE4B (up to first 250kb)
Disorders & Mutations for PDE4B
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 600127 4 Novoseek disease relationships for PDE4B gene
About this table 1 PharmGKB disease relationship for PDE4B gene About this table Human Gene Mutation Database : PDE4B Human Genome Epidemiology Navigator: PDE4B (8 documents)
Medical News for PDE4B (Possibly Related Articles in
Doctor's Guide )
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--
Publications for PDE4B (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/73 PubMed articles for PDE4B gene (see all 73
): Molecular cloning and transient expression in COS7 cells of a novel human PDE4B cAMP-specific phosphodiesterase, HSPDE4B3. (PubMed id 9371714) 1, 3, 4 Huston E.... Houslay M.D. (1997) A family of human phosphodiesterases homologous to the dunce learning and memory gene product of Drosophila melanogaster are potential targets for antidepressant drugs. (PubMed id 8413254) 3, 4 Bolger G.... Ferguson K. (1993) A low-Km, rolipram-sensitive, cAMP-specific phosphodiesterase from human brain. Cloning and expression of cDNA, biochemical characterization of recombinant protein, and tissue distribution of mRNA. (PubMed id 8384210) 3, 4 McLaughlin M.M.... Livi G.P. (1993) Gene expression and association analyses of the phosphodiesterase 4B (PDE4B) gene in major depressive disorder in the Japanese population. (PubMed id 18785206) 1, 3 Numata S....Ohmori T. (2008) PDE4B polymorphisms and decreased PDE4B expression are associated with schizophrenia. (PubMed id 18394866) 1, 3 Fatemi S.H....Menniti F.S. (2008) Positive association of the PDE4B (phosphodiesterase 4B) gene with schizophrenia in the Japanese population. (PubMed id 18329668) 1, 3 Numata S....Ohmori T. (2008) DISC1 and PDE4B are interacting genetic factors in schizophrenia that regulate cAMP signaling. (PubMed id 16293762) 1, 3 Millar J.K....Porteous D.J. (2005) The PDE4B gene confers sex-specific protection against schizophrenia. (PubMed id 17417055) 1, 3 Pickard B.S....Muir W.J. (2007) Disrupted in schizophrenia 1 and phosphodiesterase 4B: towards an understanding of psychiatric illness. (PubMed id 17823207) 1, 3 Millar J.K....Porteous D.J. (2007) DISC1, PDE4B, and NDE1 at the centrosome and synapse. (PubMed id 18983980) 1, 3 Bradshaw N.J....Millar J.K. (2008)
Search for PDE4B
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Genome Databases showing PDE4B
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing PDE4B
(According to HUGE )
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Specialized Databases showing PDE4B (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for PDE4B (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for PDE4B:
Tocris compounds for PDE4B
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009