PDE4A Gene
protein-coding GIFtS : 60
GC19P010392
phosphodiesterase 4A, cAMP-specific (phosphodiesterase E2 dunce homolog, Drosophila) (Previous names: phosphodiesterase 4A, cAMP-specific (dunce (Drosophila)-homolog phosphodiesterase E2) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbol: DPDE2 )
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Aliases & Descriptions for PDE4A
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases DPDE2 2 , 3 , 5 EC 3.1.4.17 3 PDE4 2 PDE46 2 , 3
Descriptions cAMP-specific phosphodiesterase 2 phosphodiesterase 4A 2 phosphodiesterase 4A, cAMP-specific (dunce 2 phosphodiesterase 4A, cAMP-specific (dunce (Drosophila)-homolog phosphodiesterase E2) 1 phosphodiesterase 4A, cAMP-specific (phosphodiesterase E2 dunce homolog, Drosophila) 2 phosphodiesterase E2 dunce homolog, Drosophila 2 phosphodiesterase isozyme 4 2
Search outside databases for aliases for PDE4A genePrevious GC identifers: GC19P010663 GC19P010376
Summaries for PDE4A (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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Gene Wiki entry for PDE4A
Genomic Location for PDE4A
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the PDE4A gene Entrez Gene cytogenetic band: 19p13.2 Ensembl cytogenetic band: 19p13.2 HGNC cytogenetic band: 19p13.2 PDE4A Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure
GeneLoc location for GC19P010392:
(about GC identifiers )
Start:
10,388,449 bp from pter
End:
10,441,306 bp from pter
Size:
52,858 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000019.8 NT_011295.10 Proteins for PDE4A
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: PDE4A_HUMAN, P27815 (See
protein sequence )Recommended Name: cAMP-specific 3',5'-cyclic phosphodiesterase 4A Size : 886 amino acids; 98143 Da
Subcellular location : Isoform 4: Membrane; Peripheral membrane protein. Note=Isoform 4 haspropensity for association with membranes
PDB structures from and Proteopedia : 2QYK (3D)
 
Secondary accessions : O75522 O76092 Q16255 Q16691 Q8WUQ3Alternative splicing : 5 isoforms : P27815-1 P27815-2 P27815-3 P27815-4 P27815-5 (Additional isoforms seem to exist)
Post-translational modifications:
Phosphorylated at Ser-686 and Ser-688 when expressed in S.frugiperda cells1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (4 alternative transcripts):
NP_001104777.1 NP_001104778.1 NP_001104779.1 NP_006193.1 ENSEMBL proteins: ENSP00000370061 ENSP00000341007 ENSP00000293683 ENSP00000270474 ENSP00000370078 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for PDE4A: Assays for PDE4A:
Protein
Domains/ Families for PDE4A(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P27815 ProtoNet protein and cluster: P27815
UniProtKB/Swiss-Prot: PDE4A_HUMAN, P27815 Similarity : Belongs to the cyclic nucleotide phosphodiesterase family
Gene Function for PDE4A
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_006202 Applied Biosystems Silencer ® siRNAs for PDE4A Sigma-Aldrich siRNA and siRNA Panels for PDE4A Sigma-Aldrich shRNA for PDE4A Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_001111307                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_001111307                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_001111307  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001111307 UniProtKB/Swiss-Prot: PDE4A_HUMAN, P27815 Catalytic activity : Adenosine 3',5'-cyclic phosphate + H(2)O = adenosine 5'-phosphateEnzyme regulation : Inhibited by rolipramEnzyme Number (IUBMB): EC 3.1.4.17
Genatlas biochemistry entry for PDE4A :cAMP specific nucleotide phosphodiesterase class IV,A,with homology to Drosophila duncegene,involved in signal transduction
2 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Pde4a) :2 Gene Ontology (GO) molecular function terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0004115 3',5'-cyclic-AMP phosphodiesterase activity
TAS 9677330 GO:0016787 hydrolase activity
IEA --
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Pathways & Interactions for PDE4A
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/7 Sigma-Aldrich "Your Favorite Gene" Pathways for PDE4A (Your Favorite Gene powered by Ingenuity) (see all 7
) UniProtKB/Swiss-Prot: PDE4A_HUMAN, P27815 Pathway : Purine metabolism; cAMP degradation; AMP from cAMP: step 1/1
Gene Network CentralTM Interacting Genes and Proteins Network for PDE4A 1 Gene Ontology (GO) biological process term (links to tree view) :
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Drugs & Compounds for PDE4A (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for PDE4A
Compounds for PDE4A available from Tocris Bioscience About this table 10/49 Novoseek chemical compound relationships for PDE4A gene (see all 49
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
roflumilast
95.17
80
17573446 (3), 16257550 (3), 16735669 (3), 17428447 (3) (see all 47 )
cdp 840
90.53
8
9218122 (1), 9163639 (1), 9405253 (1), 11044563 (1) (see all 8 )
8-((4-bromo-2,3-dioxobutyl)thio)-adenosine 3',5'-cyclic monophosphate
87.95
2
2160272 (1), 11863434 (1)
motapizone
81.94
4
9154331 (2), 9559883 (1), 11834608 (1)
cyclic amp
79.62
127
9559883 (4), 7998974 (4), 15021978 (3), 19442182 (3) (see all 55 )
7-benzylamino-6-chloro-2-piperazino-4-pyrrolidinopteridine
78.49
2
11992633 (2)
quazinone
76.81
1
10856433 (1)
forskolin
74.70
38
9003416 (4), 7931278 (1), 10373535 (1), 14561639 (1) (see all 31 )
cipamfylline
73.64
3
12709818 (2), 12174103 (1)
cgmp
73.49
59
8730511 (3), 8869231 (2), 1313303 (2), 1315035 (2) (see all 32 )
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Transcripts for PDE4A(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_006202 Sigma-Aldrich siRNA and siRNA Panels for PDE4A Sigma-Aldrich shRNA for PDE4A Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001111307 NM_001111308 NM_001111309 NM_006202
REFSEQ mRNAs for PDE4A gene (4 alternative transcripts): NM_001111307.1 NM_001111308.1 NM_001111309.1 NM_006202.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001111307 NM_001111308 NM_001111309 NM_006202
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_001111307                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_001111307                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_001111307  
Additional cDNA sequence: AF073745.2 AY266362.1 AY593872.1 AY618547.1 BC019864.1 BC038234.1 CR604925.1 L20965.1 M37744.1 S75213.1 U18087.1 U18088.1 U68532.1 U97584.1
9 DOTS entries : DT.208282 DT.75134232 DT.97812911 DT.100691695 DT.91866715 DT.121480536 DT.92427218 DT.86844360 DT.121480539
24/108 AceView cDNA sequences (see all 108
):AW138155 BM462182 BC038234 BQ446409 BU169201 BQ928991 BQ672933 AF073745 AY593872 BM021314 AW296744 BQ711857 F37034 U97584 S75213 BC019864 F31164 BQ052490 BQ009232 BQ961810 BF116176 CR604925 BM021079 NM_006202
highest scoring ESTs for PDE4A :AA523395 L20965 U18088 AA205223 AA326506 AA402738 AA613574 AA962029 AA975441 AA994528
Unigene Cluster for PDE4A: Phosphodiesterase 4A, cAMP-specific (phosphodiesterase E2 dunce homolog, Drosophila) Hs.89901 [show with all ESTs ] Unigene Representative Sequence: NM_001111307 GeneLoc Exon Structure 5/10 Alternative Splicing Database (ASD) splice patterns (SP) for PDE4A (see all 10
) ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11a · 11b ^ 12 ^ 13a · 13b ^ 14a · 14b ^ 15 ^ 16 ^ 17a · 17b · 17c ^ 18a · 18b ^ 19a · SP1 :   -   -   -             -   -         -             -         -     SP2 :                   -   -         -             -         -     SP3 :     -   -             -   -         -             -         -     SP4 :                             -             -         -     SP5 :       -             -   -                                
ExUns: 19b · 19c · 19d SP1 :       SP2 :       SP3 :       SP4 :       SP5 :      
About this scheme ECgene alternative splicing isoforms for PDE4A 5 Ensembl transcripts including schematic representations : ENST00000380686
ENST00000344979
ENST00000293683
ENST00000352831
ENST00000380702
Expression for PDE4A
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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PDE4A expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for PDE4A 1 / 2 / 3
13 probe-sets matching PDE4A gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GTGCACTGTGSOURCE GeneReport for Unigene cluster: Hs.89901 Expression variation in blood from EXPOLDB for PDE4A
Orthologs for PDE4A
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for PDE4A gene from 3 species
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
mouse (Mus musculus)
Pde4a5
9 (8.00 cM)
phosphodiesterase 4A, cAMP specific
--
U97586
fruit fly (Drosophila melanogaster)
dnc3
1A1--3C10
behavior cAMP-specific phosphodiesterase
60(a)
--
worm (Caenorhabditis elegans)
R153.1a3
II(7627989-7634156)
cyclic nucleotide phosphodiesterase
54(a)
--
About this table Species with no ortholog for PDE4A ENSEMBL Gene Tree for PDE4A Paralogs for PDE4A (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for PDE4A gene PDE4D 2 PDE4B 2 PDE4C 2
SNPs/Variants for PDE4A (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for PDE4A (up to first 250kb)
Disorders & Mutations for PDE4A
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 600126 10/62 Novoseek disease relationships for PDE4A gene (see all 62
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
pulmonary disease chronic obstructive
75.45
71
11964752 (3), 18341675 (2), 19213793 (2), 16267357 (2) (see all 51 )
chronic obstructive asthma
67.87
9
15912967 (1), 16257373 (1), 10419856 (1), 17428447 (1) (see all 7 )
asthma
62.31
106
19135348 (4), 15639300 (3), 11964752 (3), 14636078 (2) (see all 63 )
inflammation
49.47
37
15607122 (2), 16469485 (2), 14580925 (2), 10372831 (2) (see all 27 )
airways disease
48.73
2
16861399 (1), 15765929 (1)
dermatitis atopic
40.43
10
17355425 (2), 8752839 (2), 9338548 (1), 12824943 (1) (see all 7 )
necrosis
39.41
31
10193778 (2), 19256507 (2), 11996895 (2), 14561639 (1) (see all 20 )
leydig cell tumor
34.56
1
1713581 (1)
asthma allergic
32.77
7
15665325 (3), 11590377 (2)
leukemia lymphocytic chronic
31.68
10
12531792 (2), 11839681 (2), 15652238 (2), 17699872 (1) (see all 5 )
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Medical News for PDE4A (Possibly Related Articles in
Doctor's Guide )
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--
Publications for PDE4A (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/534 PubMed articles for PDE4A gene (see all 534
): Chromosome localizations of genes for five cAMP-specific phosphodiesterases in man and mouse. (PubMed id 8009369) 1, 2, 3 Milatovich A....Francke U. (1994) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) An unappreciated role for RNA surveillance. (PubMed id 14759258) 3, 4 Hillman R.T.... Brenner S.E. (2004) Purification and characterization of the human PDE4A catalytic domain (PDE4A330-723) expressed in Sf9 cells. (PubMed id 11566027) 3, 4 Lario P.I....Huang Z. (2001) Identification and characterization of the human homologue of the short PDE4A cAMP-specific phosphodiesterase 4A variant RD1 (PDE4A1) by analysis of the human HSPDE4A gene locus located at chromosome 19p13.2. (PubMed id 9677330) 3, 4 Sullivan M.... Houslay M.D. (1998) Molecular cloning of a novel splice variant of human type IVA (PDE- IVA) cyclic AMP phosphodiesterase and localization of the gene to the p13.2-q12 region of human chromosome 19. (PubMed id 7772058) 3, 4 Horton Y.M.... Houslay M.D. (1995) Molecular cloning and expression, in both COS-1 cells and S. cerevisiae, of a human cytosolic type-IVA, cyclic AMP specific phosphodiesterase (hPDE-IVA-h6.1). (PubMed id 7888306) 3, 4 Sullivan M.... Houslay M.D. (1994) A family of human phosphodiesterases homologous to the dunce learning and memory gene product of Drosophila melanogaster are potential targets for antidepressant drugs. (PubMed id 8413254) 3, 4 Bolger G.... Ferguson K. (1993) Cloning and expression of cDNA for a human low-Km, rolipram-sensitive cyclic AMP phosphodiesterase. (PubMed id 2160582) 3, 4 Livi G.P.... Balcarek J.M. (1990) Type 4A cAMP-specific phosphodiesterase is stored in granules of human neutrophils and eosinophils. (PubMed id 12764607) 1, 3 Pryzwansky K.B. and Madden V.J. (2003)
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Genome Databases showing PDE4A
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing PDE4A
(According to HUGE )
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Specialized Databases showing PDE4A (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section
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-- Services for PDE4A (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for PDE4A:
Tocris compounds for PDE4A
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009