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PDE3A Gene

protein-coding   GIFtS: 60

GC12P020413
phosphodiesterase 3A, cGMP-inhibited
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
CGI-PDE 1, 2
EC 3.1.4.17 3
Descriptions
CGI-PDE A 3
Cyclic GMP-inhibited phosphodiesterase A 3
cGMP-inhibited 3',5'-cyclic phosphodiesterase A 2
cyclic GMP inhibited phosphodiesterase A 2
phosphodiesterase 3A 2
phosphodiesterase 3A, cGMP-inhibited 2
External Ids
HGNC: 87781
Entrez Gene: 51392
UniProtKB: Q144323
Ensembl: ENSG000001725727
Search outside databases for aliases for PDE3A gene

Previous GC identifers: GC12P020791 GC12P020523 GC12P020422

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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UniProtKB/Swiss-Prot: PDE3A_HUMAN, Q14432
Function: Hydrolyzes both cyclic AMP (cAMP) and cyclic GMP (cGMP) (By similarity)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the PDE3A gene  

Entrez Gene cytogenetic band: 12p12   Ensembl cytogenetic band:  12p12.2   HGNC cytogenetic band: 12p12

PDE3A Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 12         GeneLoc Exon Structure

GeneLoc location for GC12P020413:     (about GC identifiers)

Start:
20,413,464 bp from pter
End:
20,725,148 bp from pter
Size:
311,685 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000012.10  NT_009714.16  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: PDE3A_HUMAN, Q14432 (See protein sequence)
Recommended Name: cGMP-inhibited 3',5'-cyclic phosphodiesterase A  
Size: 1141 amino acids; 124979 Da
Subcellular location: Membrane; Peripheral membrane protein (Potential)
PDB structures from and Proteopedia :
1LRC (3D)    
Secondary accessions: O60865 Q13348 Q17RD1

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_000912.3  

    ENSEMBL proteins: 
    ENSP00000351957 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Enzo Life Sciences proteins for PDE3A
    Recombinant Proteins from Abcam (PDE3A)
    Human Recombinant Proteins from Abnova (PDE3A)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    3 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005625 soluble fraction IEA--
    GO:0005626 insoluble fraction IEA--
    GO:0016020 membrane IEA--
    About this table

    Antibodies for PDE3A: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for PDE3A
    Browse R&D Systems for Antibodies
    Antibodies from Abcam (PDE3A), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (PDE3A)
    Novus Biologicals Antibodies for PDE3A

    Assays for PDE3A: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Enzo Life Sciences assays for PDE3A

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    2 InterPro domains/families:
     IPR002073 PDEase
     IPR003607 Met-dep_phosphohydro_HD


       GeneDecks  PDE3A for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry Q14432

    ProtoNet protein and cluster: Q14432

    1 Blocks protein family: IPB001917 Aminotransferase

    UniProtKB/Swiss-Prot: PDE3A_HUMAN, Q14432
    Similarity: Belongs to the cyclic nucleotide phosphodiesterase family

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (PDE3A)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (PDE3A)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000921

                  Applied Biosystems Silencer® siRNAs for PDE3A

                  Sigma-Aldrich siRNA and siRNA Panels for PDE3A  
                         Sigma-Aldrich shRNA for PDE3A  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Browse Clone Ranger at Invitrogen for clones
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_000921
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_000921
                                     untagged cDNA clone in CMV expression vector: NM_000921 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_000921

    UniProtKB/Swiss-Prot: PDE3A_HUMAN, Q14432
    Function: Hydrolyzes both cyclic AMP (cAMP) and cyclic GMP (cGMP) (By similarity)
    Catalytic activity: Nucleoside 3',5'-cyclic phosphate + H(2)O = nucleoside 5'-phosphate
    Enzyme regulation: Inhibited by cGMP
    Enzyme Number (IUBMB): EC 3.1.4.17 

    Genatlas biochemistry entry for PDE3A:
    cAMP,cGMP inhibited nucleotide phosphodiesterase 3A homolog,involved in fat metabolism

    1 MGI mutant phenotype (inferred from 1 allele(MGI details for Pde3a):

    reproductive system

    3 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004115 3',5'-cyclic-AMP phosphodiesterase activity IEA--
    GO:0004119 cGMP-inhibited cyclic-nucleotide phosphodiesterase activity TAS9173884
    GO:0016787 hydrolase activity IEA--
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    2 Invitrogen iPath™ Online BioAtlas - Pathways for PDE3A (Maps provided by GeneGo):
     ATP metabolism
     GTP metabolism

       GeneDecks  PDE3A for the pathways selected above  
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    2 Millipore Pathways for PDE3A
     Development Beta-adrenergic receptors signaling via cAMP
     Signal transduction PKA signaling

       GeneDecks  PDE3A for the pathways selected above  
    About GeneDecksing

    5/7 Sigma-Aldrich "Your Favorite Gene" Pathways for  PDE3A  (Your Favorite Gene powered by Ingenuity) (see all 7
     Purine Metabolism
     Aminosugars Metabolism
     Cellular Effects of Sildenafil (Viagra)
     Cardiac &beta
     Relaxin Signaling

       GeneDecks  PDE3A for the pathways selected above  
    About GeneDecksing

    2 Kegg Pathways  (Kegg details for PDE3A):
     hsa00230 Purine metabolism
     hsa04910 Insulin signaling pathway

       GeneDecks  PDE3A for the pathways selected above  
    About GeneDecksing
     Gene Network CentralTM Interacting Genes and Proteins Network for  PDE3A 


    5/18 Interacting proteins for PDE3A (ENSP000003519573 Q144322) via UniProtKB, MINT, and/or STRING (see all 18 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    YWHAZP631042MINT-3295899
    PRKACAENSP000003095913STRING (score=.943)
    PRKACBENSP000003597193STRING (score=.943)
    PRKACGENSP000003664883STRING (score=.943)
    PRKAR1AENSP000003514103STRING (score=.943)
    About this table

    5 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001556 oocyte maturation IEA--
    GO:0006629 lipid metabolic process TAS8921398
    GO:0007165 signal transduction IEA--
    GO:0040020 regulation of meiosis IEA--
    GO:0042493 response to drug IEA--
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Enzo Life Sciences drugs & compounds for PDE3A
    Sigma-Aldrich Small Molecules for PDE3A:
    Inhibitor

    Compounds for PDE3A available from Tocris Bioscience
    CompoundAction CAS number
    MilrinonePDE3 inhibitor[78415-72-2]
    CilostazolPDE3A inhibitor. Also adenosine uptake inhibitor[73963-72-1]
    CilostamidePDE3 inhibitor[68550-75-4]
    ZardaverinePDE3/4 inhibitor[101975-10-4]
    Anagrelide hydrochloridePotent PDE3 inhibitor[58579-51-4]
    About this table


    6 Novoseek chemical compound relationships for PDE3A gene
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    8-((4-bromo-2,3-dioxobutyl)thio)-adenosine 3',5'-cyclic monophosphate 93.18 2 11955000 (1), 11863434 (1)
    cgmp 76.97 55 11468344 (4), 8713077 (3), 17704206 (3), 18394675 (3) (see all 18)
    forskolin 56.19 5 9031467 (2), 11832336 (1), 16153182 (1)
    cyclic amp 44.93 1 17392505 (5), 18467075 (1)
    histidine 6.80 4 8713077 (3), 9826434 (1)
    nitric oxide 0.00 1 15265792 (1)
    About this table


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (PDE3A)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (PDE3A)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000921

                  Sigma-Aldrich siRNA and siRNA Panels for PDE3A  
                         Sigma-Aldrich shRNA for PDE3A  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_000921  

    REFSEQ mRNAs for PDE3A gene: 

    NM_000921.3   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_000921  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_000921
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_000921
                                     untagged cDNA clone in CMV expression vector: NM_000921 

    Additional cDNA sequence: 

    AJ005036.1 AK308317.1 BC117369.1 BC117371.1 M91667.2 U36798.1 

    1 DOTS entry:

    DT.109816 

    24/84 AceView cDNA sequences (see all 84 ):

    AI597722 BF435350 CK300107 BF593925 AI628567 BU632064 BQ187047 AI961922 
    BM726612 NM_000921 AI289578 BX483871 BM930781 AJ005036 AL600736 AW195207 
    BX507268 AI683378 AI742043 BU752871 BM681258 AK095203 AI249381 BX507232 

    highest scoring ESTs for PDE3A:

    AJ005036 AL600188 AL600736 AL600910 AL700955 AW195207 BE931135 BE933967 BM930781 BQ187047 

    Unigene Cluster for PDE3A:

    Phosphodiesterase 3A, cGMP-inhibited
    Hs.591150  [show with all ESTs]
    Unigene Representative Sequence: U36798


    GeneLoc Exon Structure

    1 Ensembl transcript including schematic representation:
    ENST00000359062  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    PDE3A expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for PDE3A

    1 / 2 / 3

    5 probe-sets matching PDE3A gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    34650_at2, 3 U95-A 1 0.69 1.00 1.00 1.00 AJ005036 1.00 0.90 0.95 1

    206389_s_at2, 3 U133-A 1 1.00 1.00 -- -- NM_000921 0.60 1.00 0.82 1

    206388_at2, 3 U133-A 1 1.00 1.00 -- -- U36798 0.80 0.88 0.84 1

    206389_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    206388_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    GeneDecks  PDE3A for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: TGTGTGCATA

    SOURCE GeneReport for Unigene cluster: Hs.591150

    Expression variation in blood from EXPOLDB for PDE3A

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for PDE3A gene from 5/8 species (see all 8 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    chimpanzee
    (Pan troglodytes)
    PDE3A1   -- phosphodiesterase 3A, cGMP-inhibited 99.62(n)
    99.65(a)
    465329  XM_520783.2  XP_520783.2 
    cow
    (Bos taurus)
    PDE3A1   -- phosphodiesterase 3A, cGMP-inhibited 90.65(n)
    92.01(a)
    536636  XM_616776.3  XP_616776.3 
    rat
    (Rattus norvegicus)
    Pde3a1   -- phosphodiesterase 3A, cGMP inhibited 83.35(n)
    85.11(a)
    50678  NM_017337.1  NP_059033.1 
    mouse
    (Mus musculus)
    Pde3a1, 5 65
    phosphodiesterase 3A, cGMP inhibited1, 5 83.85(n)1
    84.49(a)1
    546111  NM_018779.11  NP_061249.11 
     AA2121025  AF0991875  (see all 19)
    chicken
    (Gallus gallus)
    PDE3A1   -- phosphodiesterase 3A, cGMP-inhibited 76.86(n)
    82.92(a)
    418185  XM_416416.2  XP_416416.2 
    About this table        Species with no ortholog for PDE3A

    ENSEMBL Gene Tree for PDE3A
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for PDE3A gene
    PDE3B2  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/1916 NCBI SNPs in PDE3A are shown (see all 1916 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 589)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 12 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs9548651,2
    A,C,F,H,O20725429(-) AGTTCC/TTATAC 1 -- ng3117Minor allele frequency- T:0.25NS MN EA NA EU WA 1206
    rs64871311,2
    A,C,F,H20725509(+) AAACAC/TCTAAG 1 -- ng317Minor allele frequency- T:0.04EU EA WA NA 536
    rs64871321,2
    A,C,F,H20725556(+) AAATGA/GTGCCA 1 -- ng317Minor allele frequency- G:0.09EU EA WA NA 548
    rs15157751,2
    C,F,H20725103(-) AAGCAC/ACCTCT 1 -- ut31 ese37Minor allele frequency- A:0.03EU EA WA NA 542
    rs9548661,2
    A,C20725286(-) CTCCAC/TCAGCA 1 -- ng31 ese30--------
    rs71337641,2
    F,H20725435(+) GAACTG/CTCTAT 1 -- ng314Minor allele frequency- C:0.02EU EA WA 408
    rs107433801,2
    A,C,F,H20657826(+) CCCGTT/CACTTC 1 V/V syn1 ese38Minor allele frequency- C:0.09EU EA WA 840
    --
    rs22291921,2
    F20691130(+) TTTCTA/GGTGGC 1 L/L syn11Minor allele frequency- G:0.03MN 58
    rs13485811,2
    A,C,F,H,O20422908(+) GTCATT/CGTAAC 1 -- int116Minor allele frequency- C:0.32EA NA EU WA 1472
    rs9783491,2
    A,C,F,H,O20454401(-) AAGGAC/TAGCCC 1 -- int112Minor allele frequency- T:0.31EU EA WA NA 1052
    About this table

    HapMap Linkage Disequilibrium images for PDE3A (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 123805

    3 Novoseek disease relationships for PDE3A gene

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    erythroleukemia 33.66 2 8695850 (1), 9031467 (1)
    erectile dysfunction 17.21 3 10421499 (2), 10859452 (1)
    heart failure 6.48 3 15867171 (2), 17332439 (1)
    About this table

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/85 PubMed articles for PDE3A gene (see all 85 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 5139 HGNC: 8778 AceView: PDE3A Ensembl:ENSG00000172572 euGenes: HUgn5139
    ECgene: PDE3A H-InvDB: PDE3A
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    Wikipedia http://en.wikipedia.org/wiki/PDE3
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for PDE3A:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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     Predesigned and custom siRNAs for PDE3A Antibodies for PDE3A
     Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
     Lentivirus-delivered shRNAs for PDE3A Small molecules for PDE3A
     "Your Favorite Gene" Pathwaysfeedback


      
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     Search OriGene for PDE3A
     Tocris compounds for PDE3A




     Assays/Drugs/Proteins for PDE3A
     Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
     Antibodies for PDE3A

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