 |
 | Services
| |
 |
Aliases & Descriptions for PDE3A
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| CGI-PDE 1, 2 | | EC 3.1.4.17 3 |
| | | Descriptions |
|---|
| CGI-PDE A 3 | | Cyclic GMP-inhibited phosphodiesterase A 3 | | cGMP-inhibited 3',5'-cyclic phosphodiesterase A 2 | | cyclic GMP inhibited phosphodiesterase A 2 | | phosphodiesterase 3A 2 | | phosphodiesterase 3A, cGMP-inhibited 2 |
|
| | Search outside databases for aliases for PDE3A genePrevious GC identifers: GC12P020791 GC12P020523 GC12P020422 |
Summaries for PDE3A(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: PDE3A_HUMAN, Q14432Function: Hydrolyzes both cyclic AMP (cAMP) and cyclic GMP (cGMP) (By similarity) |
Genomic Location for PDE3A
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the PDE3A gene 
Entrez Gene cytogenetic band: 12p12 Ensembl cytogenetic band: 12p12.2 HGNC cytogenetic band: 12p12PDE3A Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 12 GeneLoc Exon Structure GeneLoc location for GC12P020413:
(about GC identifiers)
Start:
|
20,413,464 bp from pter |
End:
|
20,725,148 bp from pter |
Size:
|
311,685 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000012.10 NT_009714.16
| Proteins for PDE3A
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: PDE3A_HUMAN, Q14432 (See
protein sequence)Recommended Name: cGMP-inhibited 3',5'-cyclic phosphodiesterase A Size: 1141 amino acids; 124979 Da
Subcellular location: Membrane; Peripheral membrane protein (Potential)
PDB structures from and Proteopedia :1LRC (3D)
 
Secondary accessions: O60865 Q13348 Q17RD1Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_000912.3
ENSEMBL proteins: ENSP00000351957
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for PDE3A: Assays for PDE3A: | Protein
Domains/ Families for PDE3A(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q14432
ProtoNet protein and cluster: Q14432 1 Blocks protein family: IPB001917 Aminotransferase
UniProtKB/Swiss-Prot: PDE3A_HUMAN, Q14432Similarity: Belongs to the cyclic nucleotide phosphodiesterase family | Gene Function for PDE3A
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000921
Applied Biosystems Silencer® siRNAs for PDE3A
Sigma-Aldrich siRNA and siRNA Panels for PDE3A  Sigma-Aldrich shRNA for PDE3A  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000921                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000921                                  untagged cDNA clone in CMV expression vector: NM_000921 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000921
UniProtKB/Swiss-Prot: PDE3A_HUMAN, Q14432Function: Hydrolyzes both cyclic AMP (cAMP) and cyclic GMP (cGMP) (By similarity)Catalytic activity: Nucleoside 3',5'-cyclic phosphate + H(2)O = nucleoside 5'-phosphateEnzyme regulation: Inhibited by cGMPEnzyme Number (IUBMB): EC 3.1.4.17 Genatlas biochemistry entry for PDE3A:cAMP,cGMP inhibited nucleotide phosphodiesterase 3A homolog,involved in fat metabolism1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Pde3a):
3 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0004115 | 3',5'-cyclic-AMP phosphodiesterase activity |
IEA | -- | | GO:0004119 | cGMP-inhibited cyclic-nucleotide phosphodiesterase activity |
TAS | 9173884 | | GO:0016787 | hydrolase activity |
IEA | -- | About this table | Pathways & Interactions for PDE3A
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/7 Sigma-Aldrich "Your Favorite Gene" Pathways for PDE3A (Your Favorite Gene powered by Ingenuity) (see all 7
) 
Gene Network CentralTM Interacting Genes and Proteins Network for PDE3A 
5/18 Interacting proteins for PDE3A (ENSP000003519573 Q144322) via UniProtKB, MINT, and/or STRING (see all 18
)About this table
5 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for PDE3A(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for PDE3A |
 | Sigma-Aldrich Small Molecules for PDE3A: Inhibitor |
Compounds for PDE3A available from Tocris Bioscience About this table
6 Novoseek chemical compound relationships for PDE3A gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| 8-((4-bromo-2,3-dioxobutyl)thio)-adenosine 3',5'-cyclic monophosphate |
93.18 |
2 |
11955000 (1), 11863434 (1) |
| cgmp |
76.97 |
55 |
11468344 (4), 8713077 (3), 17704206 (3), 18394675 (3) (see all 18) |
| forskolin |
56.19 |
5 |
9031467 (2), 11832336 (1), 16153182 (1) |
| cyclic amp |
44.93 |
1 |
17392505 (5), 18467075 (1) |
| histidine |
6.80 |
4 |
8713077 (3), 9826434 (1) |
| nitric oxide |
0.00 |
1 |
15265792 (1) |
About this table
|
Transcripts for PDE3A(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000921
Sigma-Aldrich siRNA and siRNA Panels for PDE3A  Sigma-Aldrich shRNA for PDE3A  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_000921 REFSEQ mRNAs for PDE3A gene: NM_000921.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000921               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000921                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000921                                  untagged cDNA clone in CMV expression vector: NM_000921  Additional cDNA sequence: AJ005036.1 AK308317.1 BC117369.1 BC117371.1 M91667.2 U36798.1 1 DOTS entry: DT.109816 24/84 AceView cDNA sequences (see all 84
):AI597722 BF435350 CK300107 BF593925 AI628567 BU632064 BQ187047 AI961922 BM726612 NM_000921 AI289578 BX483871 BM930781 AJ005036 AL600736 AW195207 BX507268 AI683378 AI742043 BU752871 BM681258 AK095203 AI249381 BX507232
highest scoring ESTs for PDE3A:AJ005036 AL600188 AL600736 AL600910 AL700955 AW195207 BE931135 BE933967 BM930781 BQ187047 Unigene Cluster for PDE3A: Phosphodiesterase 3A, cGMP-inhibited Hs.591150 [show with all ESTs]Unigene Representative Sequence: U36798
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000359062
|
Expression for PDE3A
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| PDE3A expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for PDE3A
1 / 2 / 3 5 probe-sets matching PDE3A gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TGTGTGCATA
SOURCE GeneReport for Unigene cluster: Hs.591150
Expression variation in blood from EXPOLDB for PDE3A |
Orthologs for PDE3A
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for PDE3A gene from 5/8 species (see all 8
)
About this table Species with no ortholog for PDE3A
ENSEMBL Gene Tree for PDE3A | Paralogs for PDE3A(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for PDE3A gene
- PDE3B2
|
SNPs/Variants for PDE3A(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for PDE3A (up to first 250kb)
|
Disorders & Mutations for PDE3A
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 123805
3 Novoseek disease relationships for PDE3A gene
About this table
|
Medical News for PDE3A(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for PDE3A (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/85 PubMed articles for PDE3A gene (see all 85
):- Molecular cloning and expression of human myocardial cGMP-inhibited cAMP phosphodiesterase. (PubMed id 1315035)1, 2, 3, 4 Meacci E.... Manganiello V. (1992)
- Single-step affinity purification, partial structure and properties of human platelet cGMP inhibited cAMP phosphodiesterase. (PubMed id 8155697)1, 3, 4 Degerman E.... Manganiello V. (1994)
- Molecular biological characterization of phosphodiesterase 3A from human corpus cavernosum. (PubMed id 10421499)1, 3, 4 Kuthe A....Maegert H.-J. (1999)
- Human platelet cGI-PDE: expression in yeast and localization of the catalytic domain by deletion mutagenesis. (PubMed id 8695850)1, 3, 4 Cheung P.P....Colman R.W. (1996)
- Cardiac type cGMP-inhibited phosphodiesterase (PDE3A) gene structure: similarity and difference to adipocyte type PDE3B gene. (PubMed id 10679291)1, 2, 3 Kasuya J....Fujita-Yamaguchi Y. (2000)
- A probability-based approach for high-throughput protein phosphorylation analysis and site localization. (PubMed id 16964243)3, 4 Beausoleil S.A.... Gygi S.P. (2006)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Phosphodiesterase 3A binds to 14-3-3 proteins in response to PMA-induced phosphorylation of Ser428. (PubMed id 16153182)1, 3 Pozuelo Rubio M....Mackintosh C. (2005)
- Thrombin regulates intracellular cyclic AMP concentration in human platelets through phosphorylation/activation of phosphodiesterase 3A. (PubMed id 17392505)1, 3 Zhang W. and Colman R.W. (2007)
- Molecular cloning and chromosomal assignment of the human homologue of the rat cGMP-inhibited phosphodiesterase 1 (PDE3A) -- a gene involved in fat metabolism located at 11p15.1. (PubMed id 8921398)1, 3 Loebbert R.W.... Zabel B.U. (1996)
|
Search for PDE3A
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing PDE3A
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing PDE3A
(According to HUGE)
About This Section
| -- |
Specialized Databases showing PDE3A(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| Wikipedia | http://en.wikipedia.org/wiki/PDE3 |
|
| | | About This Section
| --
| Services for PDE3A(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for PDE3A:

 | |
 | | | | |
|
 |  |  |
| | | | Tocris compounds for PDE3A |
|
 |
 | | | |
GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
|