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Aliases & Descriptions for SIGMAR1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases FLJ25585 2 MGC3851 2 OPRS1 2 OTTHUMP00000000515 2 OTTHUMP00000000516 2 OTTHUMP00000000517 2 OTTHUMP00000021286 2 SIG-1R 3 SR-BP 3 SR-BP1 1 , 2 SRBP 3 Sigma1-receptor 3 Sigma1R 3 hSigmaR1 3
Descriptions Aging-associated gene 8 protein 2 , 3 SR31747 binding protein 1 2 SR31747-binding protein 3 opioid receptor, sigma 1 1 , 2 sigma non-opioid intracellular receptor 1 2 sigma1 receptor 2 type I sigma receptor 2
Search outside databases for aliases for SIGMAR1 gene
Summaries for SIGMAR1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for SIGMAR1 : This gene encodes a receptor protein that interacts with a variety of psychotomimetic drugs,including cocaine and amphetamines. The receptor is believed to play an important role in thecellular functions of various tissues associated with the endocrine, immune, and nervous systems.As indicated by its previous name, opioid receptor sigma 1 (OPRS1), the product of this gene waserroneously thought to function as an opioid receptor; it is now thought to be a non-opioidreceptor. Alternative splicing of this gene results in transcript variants encoding distinctisoforms. [provided by RefSeq] UniProtKB/Swiss-Prot: OPRS1_HUMAN, Q99720 Function : Functions in lipid transport from the endoplasmic reticulum and is involved in a widearray of cellular functions probably through regulation of the biogenesis of lipid microdomains atthe plasma membrane. Involved in the regulation of different receptors it plays a role in BDNFsignaling and EGF signaling. Also regulates ion channels like the potassium channel and couldmodulate neurotransmitter release. Plays a role in calcium signaling through modulation togetherwith ANK2 of the ITP3R-dependent calcium efflux at the endoplasmic reticulum. Plays a role inseveral other cell functions including proliferation, survival and death. Originally identifiedfor its ability to bind various psychoactive drugs it is involved in learning processes, memoryand mood alteration
Genomic Location for SIGMAR1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 9p13.3 Ensembl cytogenetic band: 9p13.3 HGNC cytogenetic band: 9p13.3 SIGMAR1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 9 GeneLoc Exon Structure
GeneLoc location for GC09M034625:
(about GC identifiers )
Start:
34,624,719 bp from pter
End:
34,627,768 bp from pter
Size:
3,050 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000009.10 NT_008413.17 Proteins for SIGMAR1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: OPRS1_HUMAN, Q99720 (See
protein sequence )Recommended Name: Sigma 1-type opioid receptor Size : 223 amino acids; 25128 Da
Subcellular location : Nucleus inner membrane. Nucleus outer membrane. Endoplasmic reticulummembrane. Lipid droplet. Cell junction. Cell membrane. Cell projection, growth cone. Note=Targetedto lipid droplets, cholesterol and galactosylceramide-enriched domains of the endoplasmicreticulum. Enriched at cell-cell communication regions, growth cone and postsynaptic structures.Localization is modulated by ligand-binding
Miscellaneous : Depletion of OPRS1 by RNAi inhibits growth and survival signaling cascades andinduces cell death. The OSPR1 antagonist rimcazole produces the same effect
Secondary accessions : O00673 O00725 Q0Z9W6 Q153Z1 Q2TSD1 Q53GN2 Q7Z653 Q8N7H3 Q9NYX0Alternative splicing : 5 isoforms : Q99720-1 Q99720-2 Q99720-3 Q99720-4 Q99720-5
REFSEQ proteins (2 alternative transcripts):
NP_005857.1 NP_671513.1 ENSEMBL proteins: ENSP00000368170 ENSP00000277010 ENSP00000277009 ENSP00000353935 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5/10 Gene Ontology (GO) cellular component terms (links to tree view) (see all 10
):
About this table Antibodies for SIGMAR1: Assays for SIGMAR1:
Protein
Domains/ Families for SIGMAR1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q99720 ProtoNet protein and cluster: Q99720
1 Blocks protein family : IPB006716 ERG2 and sigma1 receptor-like protein UniProtKB/Swiss-Prot: OPRS1_HUMAN, Q99720 Similarity : Belongs to the ERG2 family
Gene Function for SIGMAR1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 5 ): NM_147158 Applied Biosystems Silencer ® siRNAs for SIGMAR1 Sigma-Aldrich siRNA and siRNA Panels for SIGMAR1 Sigma-Aldrich shRNA for SIGMAR1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_005866                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_005866                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_005866  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005866 UniProtKB/Swiss-Prot: OPRS1_HUMAN, Q99720 Function : Functions in lipid transport from the endoplasmic reticulum and is involved in a widearray of cellular functions probably through regulation of the biogenesis of lipid microdomains atthe plasma membrane. Involved in the regulation of different receptors it plays a role in BDNFsignaling and EGF signaling. Also regulates ion channels like the potassium channel and couldmodulate neurotransmitter release. Plays a role in calcium signaling through modulation togetherwith ANK2 of the ITP3R-dependent calcium efflux at the endoplasmic reticulum. Plays a role inseveral other cell functions including proliferation, survival and death. Originally identifiedfor its ability to bind various psychoactive drugs it is involved in learning processes, memoryand mood alteration
2 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Sigmar1) :3 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for SIGMAR1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/6 Interacting proteins for SIGMAR1 (ENSP00000277010 3 ) via UniProtKB, MINT, and/or STRING (see all 6
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006696 ergosterol biosynthetic process
IEA -- GO:0006869 lipid transport
IEA --
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Drugs & Compounds for SIGMAR1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for SIGMAR1 5 Novoseek chemical compound relationships for SIGMAR1 gene
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Transcripts for SIGMAR1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
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OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 5 ): NM_147158 Sigma-Aldrich siRNA and siRNA Panels for SIGMAR1 Sigma-Aldrich shRNA for SIGMAR1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_005866 NM_147157
REFSEQ mRNAs for SIGMAR1 gene (2 alternative transcripts): NM_005866.2 NM_147157.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005866 NM_147157
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_005866                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_005866                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_005866  
Additional cDNA sequence: AF226604.1 AK098451.1 AK130502.1 AK222899.1 AK291092.1 AK299130.1 AY633611.1 BC004899.2 BC007839.2 CR457075.1 CR590434.1 CR591652.1 CR592515.1 CR592762.1 CR593685.1 CR593849.1 CR594423.1 CR595153.1 CR596218.1 CR598930.1 CR602297.1 CR603042.1 CR604206.1 CR604448.1 CR606455.1 CR606713.1 CR608230.1 CR608948.1 CR609235.1 CR611273.1 CR611989.1 CR619527.1 CR622156.1 CR624845.1 CR625524.1 DQ644568.1 DQ647702.1 DQ656583.1 U75283.1 U79528.1
22 DOTS entries : DT.100884984 DT.216839 DT.92455053 DT.99985706 DT.101985446 DT.100884994 DT.100045181 DT.75154631 DT.121165570 DT.95270500 DT.100884998 DT.100885001 DT.100885009 DT.92455046 DT.100884989 DT.100885004 DT.100885007 DT.100885011 DT.121165534 DT.100885010 DT.40123046 DT.95270523
24/574 AceView cDNA sequences (see all 574
):CR594423 BQ679437 BU620056 CR604206 BQ070845 BQ064293 BE276415 BM849552 CR619527 NM_147158 AA316259 CR604448 CR622156 CR593849 BI822247 CR592762 BX427615 AF226604 CR591652 CR606713 BE255885 BM745065 AL532097 BU557093
Unigene Cluster for SIGMAR1: Sigma non-opioid intracellular receptor 1 Hs.522087 [show with all ESTs ] Unigene Representative Sequence: AK130502 GeneLoc Exon Structure 5/11 Alternative Splicing Database (ASD) splice patterns (SP) for SIGMAR1 (see all 11
) ExUns: 1a · 1b · 1c · 1d · 1e · 1f ^ 2a · 2b · 2c ^ 3a · 3b · 3c ^ 4a · 4b · 4c ^ 5a · 5b · 5c · 5d SP1 :                   -     -                 SP2 :                   -     -   -   -   -           SP3 :                 -   -     -                 SP4 :                       -                 SP5 :               -   -   -     -                
About this scheme ECgene alternative splicing isoforms for SIGMAR1 4 Ensembl transcripts including schematic representations : ENST00000378892
ENST00000277010
ENST00000353468
ENST00000360710
Expression for SIGMAR1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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SIGMAR1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for SIGMAR1 1 / 2
6 probe-sets matching SIGMAR1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CACTCACACCSOURCE GeneReport for Unigene cluster: Hs.522087 UniProtKB/Swiss-Prot: OPRS1_HUMAN, Q99720 Tissue specificity : Widely expressed with higher expression in liver, colon, prostate, placenta,small intestine, heart and pancreas. Expressed in the retina by retinal pigment epithelial cells
Orthologs for SIGMAR1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for SIGMAR1 gene from 5/13 species (see all 13
)
About this table Species with no ortholog for SIGMAR1 ENSEMBL Gene Tree for SIGMAR1 Paralogs for SIGMAR1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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SNPs/Variants for SIGMAR1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for SIGMAR1 (up to first 250kb)
Disorders & Mutations for SIGMAR1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 601978 2 Novoseek disease relationships for SIGMAR1 gene
About this table Human Genome Epidemiology Navigator: SIGMAR1 (8 documents)
Medical News for SIGMAR1 (Possibly Related Articles in
Doctor's Guide )
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Publications for SIGMAR1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/81 PubMed articles for SIGMAR1 gene (see all 81
): Exon-intron structure, analysis of promoter region, and chromosomal localization of the human type 1 sigma receptor gene. (PubMed id 9453537) 2, 3, 4 Prasad P.D....Ganapathy V. (1998) Cloning and functional expression of the human type 1 sigma receptor (hSigmaR1). (PubMed id 8954936) 2, 3, 4 Kekuda R.... Ganapathy V. (1996) Colocalization of sterol isomerase and sigma(1) receptor at endoplasmic reticulum and nuclear envelope level. (PubMed id 10406945) 1, 3, 4 Dussossoy D.... Casellas P. (1999) Silencing of sigma-1 receptor induces cell death in human lens cells. (PubMed id 16472803) 3, 4 Wang L. and Duncan G. (2006) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3, 4 Ota T....Sugano S. (2004) DNA sequence and analysis of human chromosome 9. (PubMed id 15164053) 3, 4 Humphray S.J.... Dunham I. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Lack of association between sigma receptor gene variants and schizophrenia. (PubMed id 15298647) 3, 4 Satoh F.... Suwaki H. (2004) Expression pattern of the type 1 sigma receptor in the brain and identity of critical anionic amino acid residues in the ligand-binding domain of the receptor. (PubMed id 11476895) 3, 4 Seth P.... Ganapathy V. (2001) Expression pattern of sigma receptor 1 mRNA and protein in mammalian retina. (PubMed id 11687279) 3, 4 Ola M.S.... Smith S.B. (2001)
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Genome Databases showing SIGMAR1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing SIGMAR1
(According to HUGE )
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Specialized Databases showing SIGMAR1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
Wikipedia http://en.wikipedia.org/wiki/Sigma_1_Receptor
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-- Services for SIGMAR1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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