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Aliases & Descriptions for HTR2C
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| 5-HT-2C 3 | | 5-HT2C 1, 2, 3 | | 5-HTR2C 2, 3 | | 5HT-1C 3 | | HTR1C 2, 3 | | OTTHUMP00000023868 2 | | OTTHUMP00000023869 2 |
| | | Descriptions |
|---|
| 5-hydroxytryptamine (serotonin) receptor 2C 2 | | Serotonin receptor 2C 2, 3 | | serotonin 5-HT-2C receptor 2 |
|
| | Search outside databases for aliases for HTR2C genePrevious GC identifers: GC0XP108837 GC0XP110943 GC0XP111854 GC0XP112582 |
Summaries for HTR2C(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for HTR2C: Serotonin (5-hydroxytryptamine, 5-HT), a neurotransmitter, elicits a wide array of physiological effects by binding to several receptor subtypes, including the 5-HT2 family of seven-transmembrane-spanning, G-protein-coupled receptors, which activate phospholipase C and D signaling pathways. This gene encodes the 2C subtype of serotonin receptor and its mRNA is subject to multiple RNA editing events, where genomically encoded adenosine residues are converted to inosines. RNA editing is predicted to alter amino acids within the second intracellular loop of the 5-HT2C receptor and generate receptor isoforms that differ in their ability to interact with G proteins and the activation of phospholipase C and D signaling cascades, thus modulating serotonergic neurotransmission in the central nervous system. Studies in humans have reported abnormalities in patterns of 5-HT2C editing in depressed suicide victims. [provided by RefSeq] UniProtKB/Swiss-Prot: 5HT2C_HUMAN, P28335Function: This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger systemGene Wiki entry for HTR2C (5-HT2C_receptor) |
Genomic Location for HTR2C
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the HTR2C gene 
Entrez Gene cytogenetic band: Xq24 Ensembl cytogenetic band: Xq23 HGNC cytogenetic band: Xq24HTR2C Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome X GeneLoc Exon Structure GeneLoc location for GC0XP113641:
(about GC identifiers)
Start:
|
113,724,807 bp from pter |
End:
|
114,050,880 bp from pter |
Size:
|
326,074 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000023.9 NT_028405.11
| Proteins for HTR2C
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: 5HT2C_HUMAN, P28335 (See
protein sequence)Recommended Name: 5-hydroxytryptamine receptor 2C Size: 458 amino acids; 51821 Da
Subunit: Interacts with MPDZ
Subcellular location: Cell membrane; Multi-pass membrane protein
Rna editing: Modified_positions=156, 158, 160; Note=Partially edited. RNA editing generates receptor isoforms that differ in their ability to interact with the phospholipase C signaling cascade in a transfected cell line, suggesting that this RNA processing event may contribute to the modulation of serotonergic neurotransmission in the central nervous system
Secondary accessions: Q5VUF8 Q9NP28Post-translational modifications:
N-glycosylated1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_000859.1
ENSEMBL proteins: ENSP00000361018 ENSP00000276198 ENSP00000361019
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for HTR2C: Assays for HTR2C: | Protein
Domains/ Families for HTR2C(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P28335
ProtoNet protein and cluster: P28335 2 Blocks protein families: IPB000377 5-hydroxytryptamine 2C receptor signature IPB002231 5-hydroxytryptamine receptor signature
UniProtKB/Swiss-Prot: 5HT2C_HUMAN, P28335Domain: The PDZ domain-binding motif is involved in the interaction with MPDZSimilarity: Belongs to the G-protein coupled receptor 1 family | Gene Function for HTR2C
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000868
Applied Biosystems Silencer® siRNAs for HTR2C
Sigma-Aldrich siRNA and siRNA Panels for HTR2C  Sigma-Aldrich shRNA Panels and shRNA for HTR2C  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000868                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000868                                  untagged cDNA clone in CMV expression vector: NM_000868 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000868
UniProtKB/Swiss-Prot: 5HT2C_HUMAN, P28335Function: This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger systemGenatlas biochemistry entry for HTR2C:5-hydroxytryptamine (serotonin) receptor,subtype 2C with two alternatively spliced forms,G protein coupled receptor superfamily,activating the phosphatidylinositol cycle7 MGI mutant phenotypes (inferred from 5 alleles ) (MGI details for Htr2c):
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for HTR2C
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
2 Sigma-Aldrich "Your Favorite Gene" Pathways for HTR2C (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for HTR2C 
5/108 Interacting proteins for HTR2C (ENSP000002761983 P283351, 2) via UniProtKB, MINT, and/or STRING (see all 108
)About this table
5/15 Gene Ontology (GO) biological process terms (links to tree view) (see all 15
): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0007165 | signal transduction |
IEA | -- | | GO:0007208 | activation of phospholipase C activity by serotonin receptor signaling pathway |
IEA | -- | | GO:0007268 | synaptic transmission |
TAS | 9241279 | | GO:0007631 | feeding behavior |
TAS | 7700379 | | GO:0014054 | positive regulation of gamma-aminobutyric acid secretion |
IEA | -- | About this table
|
Drugs & Compounds for HTR2C(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for HTR2C |
Compounds for HTR2C available from Tocris Bioscience About this table
10/14 Novoseek chemical compound relationships for HTR2C gene (see all 14
)
About this table
1 PharmGKB drug compound relationship for HTR2C gene
| Drug compound |
PharmGKB Relations |
PubMed IDs for articles supporting these relationships |
| clozapine | PD   | 8742444 | About this table
|
Transcripts for HTR2C(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000868
Sigma-Aldrich siRNA and siRNA Panels for HTR2C  Sigma-Aldrich shRNA Panels and shRNA for HTR2C  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_000868 REFSEQ mRNAs for HTR2C gene: NM_000868.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000868               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000868                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000868                                  untagged cDNA clone in CMV expression vector: NM_000868  Additional cDNA sequence: AF208053.1 AF498983.1 AK295753.1 AK308766.1 AY114104.1 BC028688.1 BC095543.1 BX648587.1 M81778.1 U49516.1 4 DOTS entries: DT.108661 DT.100727990 DT.92416684 DT.92416685 20 AceView cDNA sequences:U49516 NM_000868 AF498983 Z40928 AF208053 CB565884 AI970140 N47111 BX648587 BX118108 BG704515 BC028688 M81778 AW002513 BX505080 CD657722 N50321 AI825491 CD103423 AY114104
highest scoring ESTs for HTR2C:M81778 U49516 AI970140 AW002513 AY114104 BX118108 BX505080 BX648587 CD103423 CD657722 Unigene Cluster for HTR2C: 5-hydroxytryptamine (serotonin) receptor 2C Hs.149037 [show with all ESTs]Unigene Representative Sequence: U49516
GeneLoc Exon Structure
2 Alternative Splicing Database (ASD) splice patterns (SP) for HTR2C
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | ^ | 6 | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | - |   | |   |
About this scheme
ECgene alternative splicing isoforms for HTR2C
3 Ensembl transcripts including schematic representations: ENST00000371950
ENST00000276198
ENST00000371951
|
Expression for HTR2C
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| HTR2C expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for HTR2C
1 / 2 / 3 6 probe-sets matching HTR2C gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TTTTACAAAG
SOURCE GeneReport for Unigene cluster: Hs.149037
Expression variation in blood from EXPOLDB for HTR2C |
Orthologs for HTR2C
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for HTR2C gene from 5/10 species (see all 10
)
About this table Species with no ortholog for HTR2C
ENSEMBL Gene Tree for HTR2C | Paralogs for HTR2C(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for HTR2C gene
- HTR2A2 HTR2B2
|
SNPs/Variants for HTR2C(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
| UniProtKB/Swiss-Prot: 5HT2C_HUMAN, P28335Polymorphism: Position 23 is polymorphic; the frequencies in unrelated Caucasians are 0.87 for Cys and 0.13 for Ser
HapMap Linkage Disequilibrium images for HTR2C (up to first 250kb)
|
Disorders & Mutations for HTR2C
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 312861
10/19 Novoseek disease relationships for HTR2C gene (see all 19
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| schizophrenia |
65.95 |
24 |
15717293 (5), 12673575 (2), 14643089 (2), 18855532 (1) (see all 15) |
| bipolar disorder |
54.49 |
6 |
18504633 (2), 9342201 (1), 12853111 (1), 8823764 (1) |
| major depression |
54.39 |
6 |
12853111 (2), 17477886 (1), 11526472 (1), 17477888 (1) (see all 5) |
| mood disorders |
36.04 |
3 |
11526472 (1), 18715570 (1) |
| psychiatric disorder |
33.93 |
10 |
12853111 (3), 18379171 (2), 16199765 (1), 7786883 (1) (see all 5) |
| attention-deficit hyperactivity disorder |
33.82 |
2 |
14574222 (1), 15303127 (1) |
| alcoholism |
33.07 |
7 |
15304380 (3), 10776672 (2), 14574222 (1), 8612062 (1) |
| psychotic |
30.85 |
2 |
9700207 (1) |
| migraine |
27.10 |
11 |
12555241 (2), 8743744 (1), 15109354 (1), 7622823 (1) (see all 6) |
| anxiety disorders |
24.02 |
1 |
7622823 (1) |
About this table
1 PharmGKB disease relationship for HTR2C gene
| Disease |
PharmGKB Relations |
PubMed IDs for articles supporting these relationships |
| Schizophrenia | PD   | 8742444 | About this table
Human Gene Mutation Database: HTR2C Genetic Association Database: HTR2C Human Genome Epidemiology Navigator: HTR2C (96 documents)
|
Medical News for HTR2C(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for HTR2C (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/344 PubMed articles for HTR2C gene (see all 344
):- Association analysis between a Cys23Ser substitution polymorphism of the human 5-HT2c receptor gene and neuronal hyperexcitability. (PubMed id 10206230)3, 4, 6 Samochowiec J.... Sander T. (1999)
- Genomic organisation and functional expression of the gene encoding the human serotonin 5-HT2C receptor. (PubMed id 7895773)2, 3, 4 Stam N.J.... Olijve W. (1994)
- A 5-HT2C receptor promoter polymorphism (HTR2C - 759C/T) is associated with obesity in women, and with resistance to weight loss in heterozygotes. (PubMed id 15048662)1, 3, 6 Pooley E.C....Harrison P.J. (2004)
- A Cys 23-Ser 23 substitution in the 5-HT(2C) receptor gene influences body weight regulation in females with seasonal affective disorder: an Austrian-Canadian collaborative study. (PubMed id 16157158)1, 3, 6 Praschak-Rieder N....Levitan R. (2005)
- Analysis of 5-hydroxytryptamine 2c receptor gene promoter variants as alcohol-dependence risk factors. (PubMed id 15304380)1, 3, 6 Mottagui-Tabar S....Heilig M. (2004)
- Depression in Alzheimer's disease: the effect of serotonin receptor gene variation. (PubMed id 12707936)1, 3, 6 Holmes C....Lovestone S. (2003)
- Identification, expression, and pharmacology of a Cys23-Ser23 substitution in the human 5-HT2c receptor gene (HTR2C). (PubMed id 7557992)1, 3, 4 Lappalainen J.... Goldman D. (1995)
- Serotonin-2A and 2C receptor gene polymorphisms in Japanese patients with obstructive sleep apnea. (PubMed id 16258205)1, 3, 6 Sakai K....Gejyo F. (2005)
- Analysis of SNP profiles in patients with major depressive disorder. (PubMed id 15927089)1, 3, 6 Koks S....Vasar E. (2006)
- Gene-environment interaction analysis of serotonin system markers with adolescent depression. (PubMed id 15241435)1, 3, 6 Eley T.C....Craig I.W. (2004)
|
Search for HTR2C
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing HTR2C
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing HTR2C
(According to HUGE)
About This Section
| -- |
Specialized Databases showing HTR2C(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for HTR2C(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for HTR2C:

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Incremental update: 13 Oct 2009
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