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Aliases & Descriptions for HTR1A
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| 5-HT-1A 3 | | 5-HT1A 1, 2, 3 | | 5HT1a 2 | | ADRB2RL1 2, 3, 5 | | ADRBRL1 2, 3 | | G-21 3 |
| | | Descriptions |
|---|
| 5-HT1a receptor 2 | | 5-hydroxytryptamine (serotonin) receptor 1A 2 | | G protein coupled receptor 2 | | Serotonin receptor 1A 3 | guanine nucleotide-binding regulatory protein-coupled receptor 2 |
|
| | Search outside databases for aliases for HTR1A genePrevious GC identifers: GC05M063417 GC05M064794 GC05M063226 GC05M063272 |
Summaries for HTR1A(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: 5HT1A_HUMAN, P08908Function: This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. The activity of this receptor is mediated by G proteins that inhibit adenylate cyclase activityGene Wiki entry for HTR1A (5-HT1A_receptor) |
Genomic Location for HTR1A
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the HTR1A gene 
Entrez Gene cytogenetic band: 5q11.2-q13 Ensembl cytogenetic band: 5q12.2 HGNC cytogenetic band: 5q11.2-q13HTR1A Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure GeneLoc location for GC05M063292:
(about GC identifiers)
Start:
|
63,292,034 bp from pter |
End:
|
63,293,302 bp from pter |
Size:
|
1,269 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000005.8 NT_006713.14
| Proteins for HTR1A
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: 5HT1A_HUMAN, P08908 (See
protein sequence)Recommended Name: 5-hydroxytryptamine receptor 1A Size: 422 amino acids; 46107 Da
Subcellular location: Cell membrane; Multi-pass membrane protein
Secondary accessions: Q6LAE7Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_000515.2
ENSEMBL proteins: ENSP00000316244
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for HTR1A: Assays for HTR1A: | Protein
Domains/ Families for HTR1A(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P08908
ProtoNet protein and cluster: P08908 2 Blocks protein families: IPB000610 5-hydroxytryptamine 1A receptor signature IPB002231 5-hydroxytryptamine receptor signature
UniProtKB/Swiss-Prot: 5HT1A_HUMAN, P08908Similarity: Belongs to the G-protein coupled receptor 1 family | Gene Function for HTR1A
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000524
Applied Biosystems Silencer® siRNAs for HTR1A
Sigma-Aldrich siRNA and siRNA Panels for HTR1A  Sigma-Aldrich shRNA Panels and shRNA for HTR1A  Explore Sigma-Aldrich super-pooled esiRNAs 
| Clones: |  | Invitrogen Clones for HTR1A | |  | Millipore Clones for the Expression of HTR1A |               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000524                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000524                                  untagged cDNA clone in CMV expression vector: NM_000524 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000524
UniProtKB/Swiss-Prot: 5HT1A_HUMAN, P08908Function: This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. The activity of this receptor is mediated by G proteins that inhibit adenylate cyclase activityGenatlas biochemistry entry for HTR1A:5-hydroxytryptamine (serotonin) receptor,subtype IA,G protein coupled receptor superfamily,inhibiting adenylate cyclase5 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Htr1a):
3 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for HTR1A
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 3 Sigma-Aldrich "Your Favorite Gene" Pathways for HTR1A (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for HTR1A 
5/24 Interacting proteins for HTR1A (ENSP000003162443) via UniProtKB, MINT, and/or STRING (see all 24
)About this table
4 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for HTR1A(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for HTR1A |
Compounds for HTR1A available from Tocris Bioscience About this table
10/27 Novoseek chemical compound relationships for HTR1A gene (see all 27
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| s 15535 |
84.73 |
4 |
9550290 (1), 8381359 (1), 8831111 (1) |
| pindobind |
78.69 |
6 |
11360926 (1), 9817696 (1), 8919640 (1), 15016478 (1) (see all 5) |
| repinotan |
78.13 |
6 |
15674237 (2), 16614737 (2), 11780862 (1), 16547395 (1) |
| nad-299 |
77.98 |
5 |
9336327 (2), 12503636 (1), 12632244 (1), 15829255 (1) |
| flibanserin |
73.12 |
11 |
11243720 (4), 12177684 (4), 15447813 (1), 17897483 (1) |
| zalospirone |
72.71 |
2 |
8497336 (1), 8784652 (1) |
| anpirtoline |
72.70 |
1 |
10788764 (1) |
| lesopitron |
72.07 |
4 |
15331910 (2), 10667616 (2) |
| (tfmpp) |
70.55 |
3 |
1689472 (1), 1410132 (1), 8472752 (1) |
| roxindole |
68.99 |
3 |
10431754 (2), 7604150 (1) |
About this table
1 PharmGKB drug compound relationship for HTR1A gene
| Drug compound |
PharmGKB Relations |
PubMed IDs for articles supporting these relationships |
| fluvoxamine | CO  GN   | 15148501 | About this table
|
Transcripts for HTR1A(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000524
Sigma-Aldrich siRNA and siRNA Panels for HTR1A  Sigma-Aldrich shRNA Panels and shRNA for HTR1A  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_000524 REFSEQ mRNAs for HTR1A gene: NM_000524.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000524               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000524                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000524                                  untagged cDNA clone in CMV expression vector: NM_000524  Additional cDNA sequence: AF498978.1 AK291429.1 AK311460.1 AK314187.1 BC069159.1 BC136263.1 S64045.1 2 DOTS entries: DT.102820664 DT.410273 7 AceView cDNA sequences:AF498978 BC069159 CD608772 NM_000524 CD608776 S64045 CD608773
highest scoring ESTs for HTR1A:AF498978 BC069159 CD608772 CD608776 S64045 CD608771 CD608774 CD608775 NM_000524 CD608773 Unigene Cluster for HTR1A: 5-hydroxytryptamine (serotonin) receptor 1A Hs.247940 [show with all ESTs]Unigene Representative Sequence: AK314187
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000323865
|
Expression for HTR1A
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| HTR1A expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for HTR1A
1 / 2 / 3 2 probe-sets matching HTR1A gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.247940
|
Orthologs for HTR1A
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for HTR1A gene from 5/11 species (see all 11
)
About this table Species with no ortholog for HTR1A
ENSEMBL Gene Tree for HTR1A | Paralogs for HTR1A(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for HTR1A gene
- HTR1D2 HTR1E2 HTR1B2 HTR1F2
|
SNPs/Variants for HTR1A(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for HTR1A (up to first 250kb)
|
Disorders & Mutations for HTR1A
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 109760
10/81 Novoseek disease relationships for HTR1A gene (see all 81
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| major depression |
65.77 |
59 |
9736659 (3), 16139805 (3), 15534042 (2), 18387740 (2) (see all 37) |
| mood disorders |
62.50 |
19 |
16467535 (2), 16863269 (1), 16756688 (1), 15262317 (1) (see all 14) |
| catalepsy |
56.72 |
21 |
12398907 (3), 9774248 (3), 10379620 (2), 15906386 (1) (see all 6) |
| anxiety disorders |
56.47 |
13 |
16979141 (3), 18047755 (2), 1763190 (2), 18163385 (2) (see all 6) |
| schizophrenia |
54.91 |
59 |
15023569 (5), 11277607 (4), 16831468 (3), 18849890 (3) (see all 31) |
| serotonin syndrome |
48.08 |
8 |
1387164 (2), 9696181 (1), 10090793 (1), 15743927 (1) |
| panic disorder |
44.55 |
11 |
8888384 (2), 10870873 (1), 15534042 (1), 15683551 (1) (see all 9) |
| generalized anxiety disorder |
43.52 |
7 |
10356651 (1), 18344738 (1), 16856115 (1), 14985704 (1) (see all 7) |
| obsessive-compulsive disorder |
41.94 |
4 |
2188516 (1), 1763190 (1), 1686817 (1), 8056999 (1) |
| reflex bradycardia |
40.25 |
2 |
9070389 (1), 15604109 (1) |
About this table
1 PharmGKB disease relationship for HTR1A gene
| Disease |
PharmGKB Relations |
PubMed IDs for articles supporting these relationships |
| Depression | CO  GN   | 15148501 | About this table
Human Gene Mutation Database: HTR1A Genetic Association Database: HTR1A Human Genome Epidemiology Navigator: HTR1A (80 documents)
|
Medical News for HTR1A(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for HTR1A (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/700 PubMed articles for HTR1A gene (see all 700
):- The effects of a 5-hydroxytryptamine 1A receptor gene polymorphism on the clinical response to fluvoxamine in depressed patients. (PubMed id 15148501)3, 6, 7 Suzuki Y....Someya T. (2004)
- Novel mutations in the promoter and coding region of the human 5-HT1A receptor gene and association analysis in schizophrenia. (PubMed id 9754630)3, 4, 6 Kawanishi Y.... Shiraishi H. (1998)
- The C(-1019)G polymorphism of the 5-HT1A gene promoter and antidepressant response in mood disorders: preliminary findings. (PubMed id 15458611)1, 3, 6 Serretti A....Zanardi R. (2004)
- Expression of 5HT1a receptors on activated human T cells. Regulation of cyclic AMP levels and T cell proliferation by 5- hydroxytryptamine. (PubMed id 8393041)1, 3, 4 Aune T.M.... Kelley K.A. (1993)
- Attenuated 5-HT1A receptor signaling in brains of suicide victims: involvement of adenylyl cyclase, phosphatidylinositol 3-kinase, Akt and mitogen-activated protein kinase. (PubMed id 12969265)1, 2, 3 Hsiung S.C....Liu K.P. (2003)
- Evidence for a combined genetic effect of the 5-HT(1A) receptor and serotonin transporter genes in the clinical outcome of major depressive patients treated with citalopram. (PubMed id 15728438)1, 3, 6 Arias B....Fananas L. (2005)
- Investigation of serotonin-related genes in antidepressant response. (PubMed id 15052272)1, 3, 6 Peters E.J....Hamilton S.P. (2004)
- Response to fluoxetine and serotonin 1A receptor (C-1019G) polymorphism in Taiwan Chinese major depressive disorder. (PubMed id 16302021)1, 3, 6 Hong C.J....Tsai S.J. (2006)
- Association of a functional 1019C>G 5-HT1A receptor gene polymorphism with panic disorder with agoraphobia. (PubMed id 14984628)1, 3, 6 Rothe C....Lesch K.P. (2004)
- Association analysis for the C-1019G promoter variant of the 5-HT1A receptor gene with auditory evoked potentials in major depression. (PubMed id 15539859)1, 3, 6 Chen T.J....Tsai S.J. (2004)
|
Search for HTR1A
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing HTR1A
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing HTR1A
(According to HUGE)
About This Section
| -- |
Specialized Databases showing HTR1A(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for HTR1A(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for HTR1A:

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Incremental update: 13 Oct 2009
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