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Aliases & Descriptions for GRIN3A
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| FLJ45414 2 | | KIAA1973 3 | | NMDAR-L 2, 3 | | NR3A 2, 5 | | OTTHUMP00000021814 2 |
| | | Descriptions |
|---|
| N-methyl-D-aspartate receptor subtype NR3A 3 | | glutamate receptor, ionotropic, N-methyl-D-aspartate 3A 2 |
|
| | Search outside databases for aliases for GRIN3A genePrevious GC identifers: GC09M095131 GC09M096075 GC09M097789 GC09M099711 GC09M101411 |
Summaries for GRIN3A(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for GRIN3A: This gene encodes a subunit of the N-methyl-D-aspartate (NMDA) receptors, which belong to the superfamily of glutamate-regulated ion channels, and function in physiological and pathological processes in the central nervous system. This subunit shows greater than 90% identity to the corresponding subunit in rat. Studies in the knockout mouse deficient in this subunit suggest that this gene may be involved in the development of synaptic elements by modulating NMDA receptor activity. [provided by RefSeq] UniProtKB/Swiss-Prot: NMD3A_HUMAN, Q8TCU5Function: NMDA receptor subtype of glutamate-gated ion channels with reduced single-channel conductance, low calcium permeability and low voltage-dependent sensitivity to magnesium. Mediated by glycine. May play a role in the development of dendritic spines. May play a role in PPP2CB-NMDAR mediated signaling mechanism (By similarity)Gene Wiki entry for GRIN3A |
Genomic Location for GRIN3A
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the GRIN3A gene 
Entrez Gene cytogenetic band: 9q31.1 Ensembl cytogenetic band: 9q31.1 HGNC cytogenetic band: 9qGRIN3A Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 9 GeneLoc Exon Structure GeneLoc location for GC09M103371:
(about GC identifiers)
Start:
|
103,371,456 bp from pter |
End:
|
103,540,683 bp from pter |
Size:
|
169,228 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000009.10 NT_008470.18
| Proteins for GRIN3A
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: NMD3A_HUMAN, Q8TCU5 (See
protein sequence)Recommended Name: Glutamate [NMDA] receptor subunit 3A precursor Size: 1115 amino acids; 125465 Da
Subunit: Forms heteromeric channel of a zeta subunit (GRIN1), a epsilon subunit (GRIN2A, GRIN2B, GRIN2C or GRIN2D) and a third subunit (GRIN3A or GRIN3B). Does not form functional homomeric channels. Found in a complex with GRIN1, GRIN2A or GRIN2B and PPP2CB. Probably interacts with PPP2CB. No complex with PPP2CB is detected when NMDARs are stimulated by NMDA (By similarity)
Subcellular location: Cell membrane; Multi-pass membrane protein (By similarity). Cell junction, synapse, postsynaptic cell membrane (By similarity). Cell junction, synapse, postsynaptic cell membrane, postsynaptic density (By similarity). Note=Enriched in post-synaptic plasma membrane and post-synaptic densities. Requires the presence of GRIN1 to be targeted at the plasma membrane (By similarity)
Developmental stage: Expressed in fetal brain
Secondary accessions: B3DLF9 Q5VTR3 Q8TF29 Q8WXI6Post-translational modifications:
N-glycosylated (By similarity)1
REFSEQ proteins: NP_597702.2
ENSEMBL proteins: ENSP00000355155
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5/8 Gene Ontology (GO) cellular component terms (links to tree view) (see all 8
): About this table
Antibodies for GRIN3A: Assays for GRIN3A: | Protein
Domains/ Families for GRIN3A(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q8TCU5
ProtoNet protein and cluster: Q8TCU5 2 Blocks protein families: IPB001320 Ionotropic glutamate receptor IPB001508 NMDA receptor signature
UniProtKB/Swiss-Prot: NMD3A_HUMAN, Q8TCU5Similarity: Belongs to the glutamate-gated ion channel (TC 1.A.10) family | Gene Function for GRIN3A
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_133445
Applied Biosystems Silencer® siRNAs for GRIN3A
Sigma-Aldrich siRNA and siRNA Panels for GRIN3A  Sigma-Aldrich shRNA for GRIN3A  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_133445                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_133445                                  untagged cDNA clone in CMV expression vector: NM_133445 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_133445
UniProtKB/Swiss-Prot: NMD3A_HUMAN, Q8TCU5Function: NMDA receptor subtype of glutamate-gated ion channels with reduced single-channel conductance, low calcium permeability and low voltage-dependent sensitivity to magnesium. Mediated by glycine. May play a role in the development of dendritic spines. May play a role in PPP2CB-NMDAR mediated signaling mechanism (By similarity)4 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Grin3a):
5/10 Gene Ontology (GO) molecular function terms (links to tree view) (see all 10
): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0000287 | magnesium ion binding |
IEA | -- | | GO:0004872 | receptor activity |
IEA | -- | | GO:0004972 | contributes to N-methyl-D-aspartate selective glutamate receptor activity |
ISS | -- | | GO:0005216 | ion channel activity |
IEA | -- | | GO:0005234 | extracellular-glutamate-gated ion channel activity |
IEA | -- | About this table | Pathways & Interactions for GRIN3A
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
4 Sigma-Aldrich "Your Favorite Gene" Pathways for GRIN3A (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for GRIN3A 
5/12 Interacting proteins for GRIN3A (ENSP000003551553) via UniProtKB, MINT, and/or STRING (see all 12
)About this table
5 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for GRIN3A(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for GRIN3A |
 | Sigma-Aldrich Small Molecules for GRIN3A: Antagonist |
Compounds for GRIN3A available from Tocris Bioscience
| Compound | Action |
CAS
number |
|---|
| (+)-MK 801 maleate | Non-competitive NMDA antagonist, acts at ion channel site | [77086-22-7] | | D-AP5 | More active form of DL-AP5 (Cat. No. 0105) | [79055-68-8] | | NMDA | Selective NMDA agonist | [6384-92-5] | | SDZ 220-581 | Competitive NMDA antagonist | [174575-17-8] | | L-701,324 | NMDA antagonist, acts glycine site | [142326-59-8] | About this table
1 Novoseek chemical compound relationship for GRIN3A gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| calcium |
2.53 |
1 |
18296432 (1) |
About this table
|
Transcripts for GRIN3A(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_133445
Sigma-Aldrich siRNA and siRNA Panels for GRIN3A  Sigma-Aldrich shRNA for GRIN3A  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_133445 REFSEQ mRNAs for GRIN3A gene: NM_133445.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_133445               OriGene GFP tagged cDNA clone in CMV expression vector: NM_133445                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_133445                                  untagged cDNA clone in CMV expression vector: NM_133445  Additional cDNA sequence: AB075853.1 AF416558.1 AJ416950.2 AK125562.1 AK127342.1 AL137422.1 AL359651.1 BC029757.1 BC132866.1 BC132868.1 BC167432.1 5 DOTS entries: DT.303624 DT.91659709 DT.101980616 DT.101958359 DT.75138664 20 AceView cDNA sequences:NM_133445 AB075853 BX643290 Z44549 BF791640 Z40440 AL137422 BX282046 AL359651 F05465 BC029757 AK127342 BF969398 AW166288 AJ416950 AF416558 BQ930853 R61128 AW956215 AI613310
highest scoring ESTs for GRIN3A:AB075853 AF416558 AJ416950 AL137422 AL359651 BC029757 BF791640 BQ930853 BX099698 BX282046 Unigene Cluster for GRIN3A: Glutamate receptor, ionotropic, N-methyl-D-aspartate 3A Hs.654783 [show with all ESTs]Unigene Representative Sequence: BC167432
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000361820
|
Expression for GRIN3A
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| GRIN3A expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for GRIN3A
1 / 2 / 3 5 probe-sets matching GRIN3A gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GATGGATTAG
SOURCE GeneReport for Unigene cluster: Hs.654783
|
Orthologs for GRIN3A
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for GRIN3A gene from 5 species
| Organism |
Gene |
Locus |
Description |
Human Similarity |
NCBI accessions |
dog (Canis familiaris) |
GRIN3A1 |
-- |
glutamate receptor, ionotropic, N-methyl-D-aspartate more |
92.88(n) 94.89(a) |
474789 XM_532019.2 XP_532019.2 |
mouse (Mus musculus) |
Grin3a5 |
4 |
glutamate receptor ionotropic, NMDA3A |
-- |
BQ174802
|
chicken (Gallus gallus) |
GRIN3A1 |
-- |
glutamate receptor, ionotropic, N-methyl-D-aspartate more |
77.54(n) 84.58(a) |
769001 XM_001232181.1 XP_001232182.1 |
zebrafish (Danio rerio) |
LOC5648321 |
-- |
similar to glutamate receptor, ionotropic, N-methyl-D-aspartate more |
63.96(n) 64.22(a) |
564832 XM_688168.3 XP_693260.3 |
African malaria mosquito (Anopheles gambiae) |
AgaP_AGAP0055271 |
-- |
AGAP005527-PA |
46.09(n) 37.5(a) |
1276211 XM_315527.2 XP_315527.2 |
About this table Species with no ortholog for GRIN3A
ENSEMBL Gene Tree for GRIN3A | Paralogs for GRIN3A(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for GRIN3A gene
- GRIN3B2
|
SNPs/Variants for GRIN3A(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for GRIN3A (up to first 250kb)
|
Disorders & Mutations for GRIN3A
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 606650
Human Genome Epidemiology Navigator: GRIN3A (5 documents)
|
Medical News for GRIN3A(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for GRIN3A (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/60 PubMed articles for GRIN3A gene (see all 60
):- Cloning and expression of the human NMDA receptor subunit NR3A. (PubMed id 11880201)1, 3, 4 Eriksson M.... Sundstroem E. (2002)
- Nucleotide sequence, genomic organization, and chromosomal localization of genes encoding the human NMDA receptor subunits NR3A and NR3B. (PubMed id 11735224)1, 3, 4 Andersson O.... von Euler G. (2001)
- Expression of the NR3A subunit of the NMDA receptor in human fetal brain. (PubMed id 14684485)3, 4 Mueller H.T. and Meador-Woodruff J.H. (2003)
- Prediction of the coding sequences of unidentified human genes. XXII. The complete sequences of 50 new cDNA clones which code for large proteins. (PubMed id 11853319)3, 4 Nagase T....Ohara O. (2001)
- An NMDA receptor signaling complex with protein phosphatase 2A. (PubMed id 11588171)3, 4 Chan S.F. and Sucher N.J. (2001)
- Analysis of NR3A receptor subunits in human native NMDA receptors. (PubMed id 17997397)1, 3 Nilsson A....Sundstrom E. (2007)
- On the role of NR3A in human NMDA receptors. (PubMed id 17617428)1, 3 Eriksson M....Sundstrom E. (2007)
- Genetic variations of the NR3A subunit of the NMDA receptor modulate prefrontal cerebral activity in humans. (PubMed id 17214563)1, 3 Gallinat J....Winterer G. (2007)
- Developmental regulation of the NMDA receptor subunits, NR3A and NR1, in human prefrontal cortex. (PubMed id 18296432)1, 3 Henson M.A....Philpot B.D. (2008)
- Pharmacogenetics of antipsychotic response in the CATIE trial: a candidate gene analysis. (PubMed id 19156168)3 Need A.C....Goldstein D.B. (2009)
|
Search for GRIN3A
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing GRIN3A
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing GRIN3A
(According to HUGE)
About This Section
| |
Specialized Databases showing GRIN3A(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for GRIN3A(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for GRIN3A:

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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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