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Aliases & Descriptions for GAA
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EC 3.2.1.20 3 LYAG 2
Descriptions Acid maltase 2 , 3 Aglucosidase alfa 3 acid alpha-glucosidase 2 glucosidase, alpha; acid 2 lysosomal alpha-glucosidase 2
Search outside databases for aliases for GAA genePrevious GC identifers: GC17M077620 GC17P081361 GC17P078637 GC17P078775
Summaries for GAA (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for GAA : This gene encodes acid alpha-glucosidase, which is essential for the degradation of glycogen toglucose in lysosomes. Different forms of acid alpha-glucosidase are obtained by proteolyticprocessing. Defects in this gene are the cause of glycogen storage disease II, also known asPompe's disease, which is an autosomal recessive disorder with a broad clinical spectrum.Three transcript variants encoding the same protein have been found for this gene. [provided byRefSeq] UniProtKB/Swiss-Prot: LYAG_HUMAN, P10253 Function : Essential for the degradation of glygogen to glucose in lysosomes
Gene Wiki entry for GAA (Acid_alpha-glucosidase)
Genomic Location for GAA
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the GAA gene Entrez Gene cytogenetic band: 17q25.2-q25.3 Ensembl cytogenetic band: 17q25.3 HGNC cytogenetic band: 17q25.2-q25.3 GAA Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17P075689:
(about GC identifiers )
Start:
75,689,950 bp from pter
End:
75,708,274 bp from pter
Size:
18,325 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000017.9 NT_024871.11 Proteins for GAA
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: LYAG_HUMAN, P10253 (See
protein sequence )Recommended Name: Lysosomal alpha-glucosidase precursor Size : 952 amino acids; 105338 Da
Subcellular location : Lysosome
Secondary accessions : Q09GN4 Q14351 Q16302 Q8IWE7
Post-translational modifications:
The different forms of acid glucosidase are obtained by proteolytic processing1
Phosphorylation of mannose residues ensures efficient transport of the enzyme to the lysosomes viathe mannose 6-phosphate receptor1
REFSEQ proteins (3 alternative transcripts):
NP_000143.2 NP_001073271.1 NP_001073272.1 ENSEMBL proteins: ENSP00000305692 ENSP00000374665 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 1 Gene Ontology (GO) cellular component term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005764 lysosome
IEA --
About this table Antibodies for GAA: Assays for GAA:
Protein
Domains/ Families for GAA(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P10253 ProtoNet protein and cluster: P10253
2 Blocks protein families : IPB000322 Glycoside hydrolase IPB000519 P-type trefoil domain UniProtKB/Swiss-Prot: LYAG_HUMAN, P10253 Similarity : Belongs to the glycosyl hydrolase 31 familySimilarity : Contains 1 P-type (trefoil) domain
Gene Function for GAA
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_001079803 Applied Biosystems Silencer ® siRNAs for GAA Sigma-Aldrich siRNA and siRNA Panels for GAA Sigma-Aldrich shRNA for GAA Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_000152                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_000152                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_000152  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001079803 UniProtKB/Swiss-Prot: LYAG_HUMAN, P10253 Function : Essential for the degradation of glygogen to glucose in lysosomesCatalytic activity : Hydrolysis of terminal, non-reducing (1->4)-linked alpha-D-glucose residueswith release of alpha-D-glucose Enzyme Number (IUBMB): EC 3.2.1.20
Genatlas biochemistry entry for GAA :glucosidase,alpha-,acid,lysosomal,catalyzing the hydrolysis of alpha 1,4 and alpha 1,6-glucosidiclinkages of glycogen
7 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Gaa) :3 Gene Ontology (GO) molecular function terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
IEA -- GO:0004558 alpha-glucosidase activity
IEA -- GO:0005529 sugar binding
IC 9505277
About this table
Pathways & Interactions for GAA
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for GAA (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for GAA 5/36 Interacting proteins for GAA (P10253 2 ENSP00000305692 3 ) via UniProtKB, MINT, and/or STRING (see all 36
)About this table 5/20 Gene Ontology (GO) biological process terms (links to tree view) (see all 20
):
About this table
Drugs & Compounds for GAA (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for GAA
Sigma-Aldrich Small Molecules for GAA:Inhibitor
Compounds for GAA available from Tocris Bioscience Compound Action
CAS
number Castanospermine Glucosidases alpha and beta inhibitor [79831-76-8] Acarbose Glucosidase alpha inhibitor (intestinal) [56180-94-0] Miglustat hydrochloride Ceramide-specific glycosyltransferase inhibitor. Also inhibits alpha-glucosidase I and II [72599-27-0] 1-Deoxynojirimycin Glucosidase I and II inhibitor [19130-96-2] Voglibose Orally active alpha-glucosidase inhibitor [83480-29-9]
About this table 10/13 Novoseek chemical compound relationships for GAA gene (see all 13
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
glycogen
90.60
299
15922959 (4), 15993875 (4), 16987711 (3), 18176891 (3) (see all 99 )
mannose 6-phosphate
80.08
12
15839836 (2), 11268285 (1), 15520017 (1), 2161765 (1) (see all 9 )
saci
52.22
3
7945303 (1), 1970872 (1)
isomaltose
44.94
2
2256108 (2)
mannose
36.82
2
15383547 (1), 1991835 (1)
maltose
32.62
5
2256108 (2), 16702880 (2), 15313146 (1)
dihydrofolate
5.23
2
11027569 (1)
lipid
0.00
4
10331465 (1), 8795843 (1), 8851479 (1)
glucose
0.00
16
10810293 (2), 12467732 (2), 8441762 (2), 2111708 (1) (see all 7 )
thymidine
0.00
6
8786092 (2), 1794057 (1)
About this table
Transcripts for GAA(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
OriGene , Expression Assays from Applied Biosystems )About This Section
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_001079803 Sigma-Aldrich siRNA and siRNA Panels for GAA Sigma-Aldrich shRNA for GAA Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000152 NM_001079803 NM_001079804
REFSEQ mRNAs for GAA gene (3 alternative transcripts): NM_000152.3 NM_001079803.1 NM_001079804.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000152 NM_001079803 NM_001079804
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_000152                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_000152                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_000152  
Additional cDNA sequence: AK299462.1 BC015908.1 BC040431.1 BC065262.1 BC113831.1 CR602301.1 CR617840.1 DQ907243.1 M34424.1 S76893.1 Y00839.1
13 DOTS entries : DT.40106107 DT.446486 DT.95214327 DT.97800364 DT.91749846 DT.100829308 DT.100766056 DT.100797310 DT.99965597 DT.100797311 DT.92476036 DT.95214329 DT.121625835
24/280 AceView cDNA sequences (see all 280
):CO249323 BU527968 CB961566 AI374996 BQ711289 CD557081 BX357744 CR617840 BX376791 BF206270 AI818623 CK906333 BM126630 BM698237 CA306511 BC040431 CA946329 BC065262 AL043559 CA428696 AL046754 AI797181 BQ687169 CD370886
highest scoring ESTs for GAA :AA028077 AA028078 AA431292 AA431653 AA444009 AA444039 AA493920 AA565284 AA583655 AA718984
Unigene Cluster for GAA: Glucosidase, alpha; acid Hs.1437 [show with all ESTs ] Unigene Representative Sequence: NM_000152 GeneLoc Exon Structure 5/6 Alternative Splicing Database (ASD) splice patterns (SP) for GAA (see all 6
) ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14 ^ 15a · 15b · 15c ^ 16 ^ 17a · 17b · 17c ^ 18 ^ SP1 :     -                           -       -         -         SP2 :                               -       -         -         SP3 :                                             -         SP4 :                                     -                 SP5 :     -   -                                              
ExUns: 19 ^ 20 ^ 21 SP1 :       SP2 :       SP3 :       SP4 :       SP5 :      
About this scheme ECgene alternative splicing isoforms for GAA 2 Ensembl transcripts including schematic representations : ENST00000302262
ENST00000390015
Expression for GAA
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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GAA expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for GAA 1 / 2 / 3
4 probe-sets matching GAA gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CGGGTAGTATSOURCE GeneReport for Unigene cluster: Hs.1437 Expression variation in blood from EXPOLDB for GAA
Orthologs for GAA
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for GAA gene from 5/14 species (see all 14
)
About this table Species with no ortholog for GAA ENSEMBL Gene Tree for GAA Paralogs for GAA (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for GAA gene GANC 2 GANAB 2
SNPs/Variants for GAA (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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UniProtKB/Swiss-Prot: LYAG_HUMAN, P10253 Polymorphism : There are three common alleles of GAA: GAA*1, GAA*2 and GAA*4. The sequence shown isthat of allele GAA*1, which is the most common. Alleles GAA*2 and GAA*4 are much rarer
HapMap Linkage Disequilibrium images for GAA (up to first 250kb)
Disorders & Mutations for GAA
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 606800 disorders : 232300 UniProtKB/Swiss-Prot: LYAG_HUMAN, P10253
Defects in GAA are the cause of glycogen storage disease type 2 (GSD2) [MIM:232300]; alsocalled acid alpha-glucosidase (GAA) deficiency or acid maltase deficiency (AMD). GSD2 is ametabolic disorder with a broad clinical spectrum. The severe infantile form, or Pompe disease,presents at birth with massive accumulation of glycogen in muscle, heart and liver. Cardiomyopathyand muscular hypotonia are the cardinal features of this form whose life expectancy is less thantwo years. The juvenile and adult forms present as limb-girdle muscular dystrophy beginning in thelower limbs. Final outcome depends on respiratory muscle failure. Patients with the adult form canbe free of clinical symptoms for most of their life but finally develop a slowly progressivemyopathy
10/44 Novoseek disease relationships for GAA gene (see all 44
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
pompe disease
99.37
613
2112630 (5), 12467732 (5), 18703766 (4), 18176891 (4) (see all 99 )
glycogen storage disease
88.93
22
9382133 (2), 8577057 (2), 9694159 (1), 10331465 (1) (see all 18 )
danon disease
86.84
6
16640643 (1), 16901453 (1), 7699392 (1), 17541230 (1) (see all 6 )
myopathy
86.11
62
10658172 (2), 11268285 (2), 1895140 (1), 1915449 (1) (see all 41 )
infantile glycogen storage disease type ii
83.94
3
11286229 (1), 8884087 (1)
glycogen storage disease type iv
78.99
5
10331465 (1), 10658172 (1), 8795843 (1), 15038665 (1)
enzyme deficiency
75.28
7
10658172 (1), 11268285 (1), 18425781 (1), 9847997 (1) (see all 6 )
rigid spine syndrome
75.10
3
9052818 (1), 7719139 (1), 16531044 (1)
lysosomal storage diseases
74.61
14
11949932 (1), 11991748 (1), 15668445 (1), 17924344 (1) (see all 7 )
mcardles disease
72.85
4
1837202 (2), 9847997 (1), 15038665 (1)
About this table GeneTests: GAA Glycogen Storage Disease Type II (Pompe Disease) Human Gene Mutation Database : GAA Genetic Association Database: GAA Human Genome Epidemiology Navigator: GAA (16 documents)
Medical News for GAA (Possibly Related Articles in
Doctor's Guide )
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Publications for GAA (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/303 PubMed articles for GAA gene (see all 303
): Leaky splicing mutation in the acid maltase gene is associated with delayed onset of glycogenosis type II. (PubMed id 7717400) 1, 3, 4, 6 Boerkoel C.F.... Raben N. (1995) Sequence of the cDNA and 5'-flanking region for human acid alpha- glucosidase, detection of an intron in the 5' untranslated leader sequence, definition of 18-bp polymorphisms, and differences with previous cDNA and amino acid sequences. (PubMed id 2111708) 1, 3, 4 Martiniuk F.... Hirschhorn R. (1990) Twenty-two novel mutations in the lysosomal alpha-glucosidase gene (GAA) underscore the genotype-phenotype correlation in glycogen storage disease type II. (PubMed id 14695532) 1, 3, 4 Hermans M.M.P.... Reuser A.J.J. (2004) Acid alpha-glucosidase deficiency: identification and expression of a missense mutation (S529V) in a Japanese adult phenotype. (PubMed id 8834250) 1, 3, 4 Tsunoda H....Martiniuk F. (1996) The effect of a single base pair deletion (delta T525) and a C1634T missense mutation (Pro545Leu) on the expression of lysosomal alpha- glucosidase in patients with glycogen storage disease type II. (PubMed id 7881422) 1, 3, 4 Hermans M.M.P.... Reuser A.J.J. (1994) The conservative substitution Asp-645-->Glu in lysosomal alpha- glucosidase affects transport and phosphorylation of the enzyme in an adult patient with glycogen-storage disease type II. (PubMed id 8094613) 1, 3, 4 Hermans M.M.P.... Reuser A.J.J. (1993) Identification of the base-pair substitution responsible for a human acid alpha glucosidase allele with lower 'affinity' for glycogen (GAA 2) and transient gene expression in deficient cells. (PubMed id 2203258) 1, 3, 4 Martiniuk F.... Hirschhorn R. (1990) Mutation profile of the GAA gene in 40 Italian patients with late onset glycogen storage disease type II. (PubMed id 16917947) 1, 3, 4 Montalvo A.L.... Pittis M.G. (2006) Adult-onset glycogen storage disease type II: phenotypic and allelic heterogeneity in German patients. (PubMed id 10737124) 1, 3, 4 Vorgerd M....Kilimann M.W. (1998) Two mutations affecting the transport and maturation of lysosomal alpha-glucosidase in an adult case of glycogen storage disease type II. (PubMed id 8401535) 1, 3, 4 Hermans M.M.P.... Reuser A.J.J. (1993)
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Genome Databases showing GAA
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing GAA
(According to HUGE )
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Specialized Databases showing GAA (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
GAA http://www.pompecenter.nl/index.html GeneReviews http://www.genetests.org/query?gene=GAA Wikipedia http://en.wikipedia.org/wiki/Alpha-glucosidase
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-- Services for GAA (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for GAA:
Recombinant Proteins (GAA ) Antibodies (GAA )
Tocris compounds for GAA
Antibodies for GAA
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009