Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

FNBP1 Gene

protein-coding   GIFtS: 53
GCID: GC09M132649

formin binding protein 1

 Explore 5 diseases affiliated with
FNBP1 via our new
 Human Malady Compendium 
Biological research products
for FNBP1
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Formin Binding Protein 11 2
FBP171 2 3 5
KIAA05541 3
Formin-Binding Protein 172 3
Formin-Binding Protein 12
HFBP171

External Ids:    HGNC: 170691   Entrez Gene: 230482   Ensembl: ENSG000001872397   OMIM: 6061915   UniProtKB: Q96RU33   

Export aliases for FNBP1 gene to outside databases

Previous GC identifers: GC09M124295 GC09M126103 GC09M128025 GC09M129730 GC09M131690 GC09M102248


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for FNBP1:
The protein encoded by this gene is a member of the formin-binding-protein family. The protein contains an N-terminal
Fer/Cdc42-interacting protein 4 (CIP4) homology (FCH) domain followed by a coiled-coil domain, a proline-rich motif, a
second coiled-coil domain, a Rho family protein-binding domain (RBD), and a C-terminal SH3 domain. This protein binds
sorting nexin 2 (SNX2), tankyrase (TNKS), and dynamin; an interaction between this protein and formin has not been
demonstrated yet in human. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: FNBP1_HUMAN, Q96RU3
Function: May act as a link between RND2 signaling and regulation of the actin cytoskeleton (By similarity). Required
to coordinate membrane tubulation with reorganization of the actin cytoskeleton during the late stage of
clathrin-mediated endocytosis. Binds to lipids such as phosphatidylinositol 4,5-bisphosphate and phosphatidylserine
and promotes membrane invagination and the formation of tubules. Also enhances actin polymerization via the
recruitment of WASL/N-WASP, which in turn activates the Arp2/3 complex. Actin polymerization may promote the fission
of membrane tubules to form endocytic vesicles. May be required for the lysosomal retention of FASLG/FASL

Gene Wiki entry for FNBP1


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000009.11  NC_018920.1  NT_008470.19  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the FNBP1 gene promoter:
         SRF   SRF (504 AA)   C/EBPalpha   Max   PPAR-gamma1   POU2F1   POU2F1a   PPAR-gamma2   c-Myc   Hlf   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidFNBP1 promoter sequence
   Search SABiosciences Chromatin IP Primers for FNBP1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FNBP1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 9q34   Ensembl cytogenetic band:  9q34.11   HGNC cytogenetic band: 9q34

FNBP1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
FNBP1 gene location

GeneLoc information about chromosome 9         GeneLoc Exon Structure

GeneLoc location for GC09M132649:  view genomic region     (about GC identifiers)

Start:
132,649,466 bp from pter      End:
132,805,473 bp from pter
Size:
156,008 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: FNBP1_HUMAN, Q96RU3 (See protein sequence)
Recommended Name: Formin-binding protein 1  
Size: 617 amino acids; 71307 Da
Subunit: Interacts specifically with GTP-bound RND2 and CDC42. Interacts with PDE6G and microtubules (By similarity).
Homodimerizes, the dimers can polymerize end-to-end to form filamentous structures. Interacts with AKAP9, ARHGAP17,
DAAM1, DIAPH1, DIAPH2, DNM1, DNM2, DNM3, FASLG/FASL, SNX2 and WASL/N-WASP. May interact with TNKS
Subcellular location: Cytoplasm. Cytoplasm, cytoskeleton. Cytoplasm, cell cortex. Lysosome. Cytoplasmic vesicle. Cell
membrane; Peripheral membrane protein; Cytoplasmic side. Membrane, clathrin-coated pit. Note=Enriched in cortical
regions coincident with F-actin. Also localizes to endocytic vesicles and lysosomes
Sequence caution: Sequence=AAH62463.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A
sequence; Sequence=AAK49824.1; Type=Erroneous initiation; Sequence=BAA25480.1; Type=Erroneous initiation;
Sequence=BAA91451.1; Type=Erroneous initiation; Sequence=CAI12149.1; Type=Erroneous gene model prediction;
Sequence=CAI12150.1; Type=Erroneous gene model prediction; Sequence=CAI13910.1; Type=Erroneous gene model prediction;
Sequence=CAI13911.1; Type=Erroneous gene model prediction;
1 PDB 3D structure from and Proteopedia for FNBP1:
2EFL (3D)    
Secondary accessions: O60301 Q3MIN8 Q5TC87 Q5TC88 Q6P658 Q7LGG2 Q9H8H8 Q9NWD1
Alternative splicing: 4 isoforms:  Q96RU3-1   Q96RU3-2   Q96RU3-3   Q96RU3-4   

Explore the universe of human proteins at neXtProt for FNBP1: NX_Q96RU3

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q96RU3

  • FNBP1 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_055848.1  
    ENSEMBL proteins: 
     ENSP00000361493   ENSP00000415602   ENSP00000347907   ENSP00000413625   ENSP00000407548  
     ENSP00000389117  

    Human Recombinant Protein Products: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    OriGene Purified Protein: FNBP1
    OriGene Protein Over-expression Lysate: FNBP1
    OriGene Custom Protein Services for FNBP1 
    GenScript Custom Purified and Recombinant Proteins Services for FNBP1
    Novus Biologicals FNBP1 Protein
    Novus Biologicals FNBP1 Lysate
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for FNBP1

    Gene Ontology (GO): 5/6 cellular component terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005764lysosome IEA--
    GO:0005856cytoskeleton IEA--
    GO:0005886plasma membrane IEA--
    GO:0005905coated pit IEA--
    GO:0005938cell cortex IEA--


    FNBP1 for ontologies           About GeneDecksing



    FNBP1 Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse R&D Systems for Antibodies
    OriGene Antibodies: FNBP1
    OriGene Custom Antibody Services for FNBP1 
    GenScript Custom Superior Antibodies Services for FNBP1
    Novus Biologicals FNBP1 Antibodies
    Search for Antibodies for FNBP1 at Abcam  
    Uscn Antibodies for FNBP1
    ThermoFisher Antibodies for FNBP1

    Assay Products for FNBP1: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for FNBP1
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for FNBP1


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    FNBP1 for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR001060 FCH
     IPR001452 SH3_domain
     IPR014729 Rossmann-like_a/b/a_fold

    Graphical View of Domain Structure for InterPro Entry Q96RU3

    ProtoNet protein and cluster: Q96RU3

    2 Blocks protein families:
    IPB001060 Cdc15/Fes/CIP4
    IPB001452 SH3 domain signature


    UniProtKB/Swiss-Prot: FNBP1_HUMAN, Q96RU3
    Domain: The F-BAR domain binds the phospholipid membrane with its concave surface. The end-to-end polymerization of
    dimers of these domains provides a curved surface that fits best membranes with around 600 A diameter, and may drive
    tubulation
    Similarity: Belongs to the FNBP1 family
    Similarity: Contains 1 FCH domain
    Similarity: Contains 1 REM (Hr1) repeat
    Similarity: Contains 1 SH3 domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: FNBP1_HUMAN, Q96RU3
    Function: May act as a link between RND2 signaling and regulation of the actin cytoskeleton (By similarity). Required
    to coordinate membrane tubulation with reorganization of the actin cytoskeleton during the late stage of
    clathrin-mediated endocytosis. Binds to lipids such as phosphatidylinositol 4,5-bisphosphate and phosphatidylserine
    and promotes membrane invagination and the formation of tubules. Also enhances actin polymerization via the
    recruitment of WASL/N-WASP, which in turn activates the Arp2/3 complex. Actin polymerization may promote the fission
    of membrane tubules to form endocytic vesicles. May be required for the lysosomal retention of FASLG/FASL

    miRNA
    Products:
        
    OriGene 3'-UTR Clone: FNBP1
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat FNBP1
    8/46 QIAGEN miScript miRNA Assays for microRNAs that regulate FNBP1 (see all 46):
    hsa-miR-624 hsa-miR-301a hsa-miR-766 hsa-miR-650 hsa-miR-877* hsa-miR-1184 hsa-miR-124 hsa-miR-9
    SwitchGear 3'UTR luciferase reporter plasmidFNBP1 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for FNBP1 (see all 7)
    OriGene shRNA RFP: FNBP1
    Browse OriGene siRNA
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat FNBP1

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for FNBP1

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for FNBP1 (see all 7)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for FNBP1
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: FNBP1 (NM_015033)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for FNBP1
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat FNBP1 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for FNBP1
    Search LifeMap BioReagents cell lines for FNBP1

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FNBP1

    Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding IPI--
    GO:0008289lipid binding IEA--
    GO:0042802identical protein binding IPI17512409


    FNBP1 for ontologies           About GeneDecksing



    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for FNBP1

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/37 Interacting proteins for FNBP1 (Q96RU31, 2, 3 ENSP000004136254) via UniProtKB, MINT, STRING, and/or I2D (see all 37)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    TNKSO952711, 2, 3, ENSP000003115794EBI-2948562,EBI-1105254 MINT-7027181 MINT-7027206 MINT-7026692 MINT-7027261 MINT-7027245 MINT-7027162 MINT-7027223 I2D: score=6 STRING: ENSP00000311579
    SNX2O607491, 2, 3, ENSP000003688314EBI-2948562,EBI-1046690 MINT-7026677 MINT-7027275 I2D: score=6 STRING: ENSP00000368831
    DAAM1Q9Y4D12, 3, ENSP000002471704MINT-7146160 I2D: score=1 STRING: ENSP00000247170
    GABARAPO951661, 3EBI-2948562,EBI-712001 I2D: score=3 
    FASLGP480232, 3, ENSP000003566944MINT-7137047 MINT-7137280 MINT-7137291 MINT-7137059 I2D: score=5 STRING: ENSP00000356694
    About this table

    Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006897endocytosis IEA--
    GO:0007399nervous system development ----


    FNBP1 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for FNBP1

    10/125 HMDB Compounds for FNBP1 (see all 125)    About this table
    CompoundSynonyms CAS #PubMed Ids
    Guanosine triphosphate5'-GTP (see all 10)86-01-1--
    PS(14:0/14:0)Phosphatidylserine(14:0/14:0) (see all 7)----
    PS(14:0/14:1(9Z))Phosphatidylserine(14:0/14:1n5) (see all 13)----
    PS(14:0/16:0)1-myristoyl-2-palmitoyl-sn-glycero-3-phosphoserine (see all 7)----
    PS(14:0/16:1(9Z))PS(14:0/16:1n7) (see all 13)----
    PS(14:0/18:0)Phosphatidylserine(32:0) (see all 7)----
    PS(14:0/18:1(9Z))PSer(14:0/18:1n9) (see all 13)----
    PS(14:0/18:2(9Z,12Z))PS(14:0/18:2) (see all 13)----
    PS(14:0/18:3(9Z,12Z,15Z))Phosphatidylserine(14:0/18:3) (see all 14)----
    PS(14:0/20:3(8Z,11Z,14Z))PSer(14:0/20:3) (see all 14)----
    Search CenterWatch for drugs/clinical trials and news about FNBP1 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for FNBP1 gene: 
    NM_015033.2  

    Unigene Cluster for FNBP1:

    Formin binding protein 1
    Hs.189409  [show with all ESTs]
    Unigene Representative Sequence: AL049935
    11 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000372416 ENST00000479142 ENST00000449089(uc004byx.1 uc004byy.1 uc004byz.1)
    ENST00000355681 ENST00000478129 ENST00000462766 ENST00000482107 ENST00000491905
    ENST00000446176(uc011mbu.1 uc004byw.1 uc011mbv.1 uc011mbw.1)
    ENST00000420781(uc004bza.2) ENST00000443566

    miRNA
    Products:
         
    OriGene 3'-UTR Clone: FNBP1
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat FNBP1
    8/46 QIAGEN miScript miRNA Assays for microRNAs that regulate FNBP1 (see all 46):
    hsa-miR-624 hsa-miR-301a hsa-miR-766 hsa-miR-650 hsa-miR-877* hsa-miR-1184 hsa-miR-124 hsa-miR-9
    SwitchGear 3'UTR luciferase reporter plasmidFNBP1 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for FNBP1 (see all 7)
    OriGene shRNA RFP: FNBP1
    Browse OriGene siRNA
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat FNBP1
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for FNBP1 (see all 7)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for FNBP1
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: FNBP1 (NM_015033)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for FNBP1
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat FNBP1 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for FNBP1
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat FNBP1
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat FNBP1
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat FNBP1

    Additional cDNA sequence: 

    AB011126.1 AF265550.1 AK000975.1 AK001616.1 AK023681.1 AK090963.1 AK293743.1 AL049935.1 
    AL832949.1 AY952886.3 BC009262.2 BC018159.1 BC062463.1 BC094851.1 BC101755.1 BC143513.1 
    BC143514.1 BC143515.1 

    24/27 DOTS entries (see all 27):

    DT.99963101  DT.75104267  DT.408472  DT.95098992  DT.97845617  DT.419332  DT.97845616  DT.101966743 
    DT.91997887  DT.310649  DT.100775911  DT.435785  DT.95358258  DT.121170262  DT.100680973  DT.91751661 
    DT.121170211  DT.121170193  DT.100025033  DT.100775913  DT.87015403  DT.95157239  DT.121170099  DT.91751662 

    24/424 AceView cDNA sequences (see all 424):

    BQ918663 BM725380 BG685946 AA626132 AA206843 BX431686 BM455891 AU118047 
    BM478022 AA705001 BM697621 AA733093 AA449152 AA381979 AI360858 AA465250 
    BC062463 AA482387 AA864599 BM475826 CR616499 M79001 AA262829 CD172352 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    FNBP1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: TTTCTTATTG

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See FNBP1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for FNBP1

    SOURCE GeneReport for Unigene cluster: Hs.189409

    UniProtKB/Swiss-Prot: FNBP1_HUMAN, Q96RU3
    Tissue specificity: Very highly expressed in the epithelial cells of the gastrointestinal tract, respiratory,
    reproductive and urinary systems. Also highly expressed in brown adipose tissue, cardiomyocytes, enteric ganglia and
    glucagon producing cells of the pancreas. Expressed in germ cells of the testis and all regions of the brain

        SABiosciences Custom PCR Arrays for FNBP1
    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for FNBP1
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat FNBP1
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat FNBP1
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat FNBP1
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FNBP1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for FNBP1 gene from 5/20 species (see all 20)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves FNBP11 formin binding protein 1 83.63(n)
    89.3(a)
      417187  XM_415469.3  XP_415469.2 
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.105872 Xenopus laevis transcribed sequence with weak similarity more 84.43(n)    BX844235.1 
    zebrafish
    (Danio rerio)
    Actinopterygii LOC5620491 formin-binding protein 1-like 72.1(n)
    76.37(a)
      562049  XM_685446.5  XP_690538.5 
    fruit fly
    (Drosophila melanogaster)
    Insecta Cip46
    Cip4
    33(a)
    1 → many
    3L(4322491-4364102)
    worm
    (Caenorhabditis elegans)
    Secernentea toca-16
    toca-26
    TOCA (Transducer Of Cdc42-dependent Actin assembly...
    TOCA (Transducer Of Cdc42-dependent Actin assembly...
    24(a)
    22(a)
    many ↔ many
    many ↔ many
    X(1511063-1521482)
    III(13755841-13759350)


    ENSEMBL Gene Tree for FNBP1 (if available)
    TreeFam Gene Tree for FNBP1 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for FNBP1 gene
    TRIP102  FNBP1L2  
    3 SIMAP similar genes for FNBP1 using alignment to 7 protein entries:     FNBP1_HUMAN (see all proteins):
    FNBP1L    TRIP10    STP

    FNBP1 for paralogs           About GeneDecksing


    2 Pseudogenes.org Pseudogenes for FNBP1
    PGOHUM00000240689 PGOHUM00000237567


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/2685 NCBI SNPs in FNBP1 are shown (see all 2685    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 9 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1473353101,2
    --132649035(+) CTCCGC/TACTGC 1 -- ds50010--------
    rs1917071781,2
    --132649053(+) TTCACA/CGAAAC 1 -- ds50010--------
    rs727572191,2
    C,--132649267(+) GCACTA/GCATCA 1 -- ds50010--------
    rs1888824741,2
    --132649301(+) TCTGAC/GAGCCT 1 -- ds50010--------
    rs38245391,2
    C,F,H,--132649310(+) CTCCCC/TCTCCA 1 -- ds50017Minor allele frequency- T:0.02EA NS NA 2134
    rs788400001,2
    F,--132649384(+) CAGCCC/AAGGGG 1 -- ds50011Minor allele frequency- A:0.04WA 118
    rs1930798311,2
    --132649425(+) CTAGGG/TTCATA 1 -- ds50010--------
    rs1410010401,2
    --132649454(+) GTCCCA/GTGACA 1 -- ds50010--------
    rs1420201411,2
    C,--132649564(+) TCTCC-/AGAGACA 1 -- ut310--------
    rs1150076601,2
    C,--132649661(+) ACGAAC/TATTTT 1 -- ut310--------

    HapMap Linkage Disequilibrium report for FNBP1 (132649466 - 132805473 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 1 variation for FNBP1
         1 CNV: 6719

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing FNBP1
    DNA2.0 Custom Variant and Variant Library Synthesis for FNBP1

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    FNBP1 for disorders           About GeneDecksing

    OMIM gene information: 606191    OMIM disorders: --

    UniProtKB/Swiss-Prot: FNBP1_HUMAN, Q96RU3
  • Note=A chromosomal aberration involving FNBP1 is found in acute leukemias. Translocation t(9;11)(q34;q23) with
  • MLL. The relatively low incidence of the MLL-FNBP1 fusion protein in acute leukemia may reflect the marginal capacity
    of this fusion protein to induce cellular transformation

    5 diseases for FNBP1:    About MalaCards
    wiskott-aldrich syndrome    multiple myeloma    myeloma    leukemia
    neuronitis

    1 Novoseek disease relationship for FNBP1 gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    leukemia 10.3 2 11438682 (1)

    Human Genome Epidemiology (HuGE) Navigator: FNBP1 (1 document)

    Export disorders for FNBP1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for FNBP1 gene, integrated from 9 sources (see all 53):
    (articles sorted by number of sources associating them with FNBP1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The human formin-binding protein 17 (FBP17) interacts with sorting nexin, SNX2, and is an MLL-fusion partner in acute myelogeneous leukemia. (PubMed id 11438682)1, 2, 3, 9 Fuchs U.... Borkhardt A. (2001)
    2. Prediction of the coding sequences of unidentified human genes. IX. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro. (PubMed id 9628581)1, 2, 3 Nagase T....Ohara O. (1998)
    3. A novel dynamin-associating molecule, formin-binding protein 17, induces tubular membrane invaginations and participates in endocytosis. (PubMed id 15252009)1, 2, 9 Kamioka Y....Mochizuki N. (2004)
    4. The formin-binding protein 17, FBP17, binds via a TNKS binding motif to tankyrase, a protein involved in telomere maintenance. (PubMed id 14596906)1, 2, 9 Fuchs U.... Borkhardt A. (2003)
    5. Coordination between the actin cytoskeleton and membrane deformation by a novel membrane tubulation domain of PCH proteins is involved in endocytosis. (PubMed id 16418535)1, 2, 9 Tsujita K....Takenawa T. (2006)
    6. Curved EFC/F-BAR-domain dimers are joined end to end into a filament for membrane invagination in endocytosis. (PubMed id 17512409)1, 2, 9 Shimada A....Yokoyama S. (2007)
    7. Regulation of FasL expression: a SH3 domain containing protein family involved in the lysosomal association of FasL. (PubMed id 16318909)1, 2, 9 Qian J....Janssen O. (2006)
    8. The diaphanous-related formin DAAM1 collaborates with the Rho GTPases RhoA and Cdc42, CIP4 and Src in regulating cell morphogenesis and actin dynamics. (PubMed id 16630611)1, 2 Aspenstroem P.... Johansson A.-S. (2006)
    9. A probability-based approach for high-throughput protein phosphorylation analysis and site localization. (PubMed id 16964243)1, 2 Beausoleil S.A.... Gygi S.P. (2006)
    10. Dynamin and the actin cytoskeleton cooperatively regulate plasma membrane invagination by BAR and F-BAR proteins. (PubMed id 16326391)1, 2 Itoh T....De Camilli P. (2005)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 23048 HGNC: 17069 AceView: FNBP1 Ensembl:ENSG00000187239 euGenes: HUgn23048
    ECgene: FNBP1 H-InvDB: FNBP1

    (According to HUGE)
    About This Section
    HUGE: KIAA0554

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for FNBP1 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for FNBP1 Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for FNBP1 gene:
    Search GeneIP for patents involving FNBP1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Browse Antibodies   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     OriGene Antibodies for FNBP1   OriGene shRNA RFP for FNBP1  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for FNBP1   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for FNBP1  
     OriGene Protein Over-expression Lysate for FNBP1   Browse OriGene Fluorogenic Cell Assay Kits  
     Browse OriGene siRNAs   OriGene 3'-UTR Clone for FNBP1  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for FNBP1   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for FNBP1  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     OriGene Purified Protein for FNBP1   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for FNBP1   OriGene Custom Protein Services for FNBP1  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat FNBP1
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing FNBP1
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FNBP1
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat FNBP1
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat FNBP1
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat FNBP1
     GenScript Custom Purified and Recombinant Proteins Services for FNBP1 GenScript cDNA clones with any tag delivered in your preferred vector for FNBP1
     GenScript Custom Assay Services for FNBP1 GenScript Custom Superior Antibodies Services for FNBP1
     GenScript Custom overexpressing Cell Line Services for FNBP1 CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in FNBP1 promoter
     Search Chromatin IP Primers for FNBP1
     RT2 qPCR Primer Assay in human, mouse, rat FNBP1
     GNC Network for FNBP1
     SABiosciences Custom PCR Arrays for FNBP1
     Search Tocris compounds for FNBP1
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     FNBP1 antibodies
     FNBP1 proteins
     FNBP1 lysates
     Search for Antibodies for FNBP1 at Abcam
     See all of Abcam's Antibodies, Kits and Proteins for FNBP1
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     FNBP1 Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for FNBP1
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FNBP1
     SwitchGear 3'UTR luciferase reporter plasmids for FNBP1
     SwitchGear Promoter luciferase reporter plasmids for FNBP1
     ThermoFisher Antibodies for FNBP1
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat FNBP1
           
    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      FNBP1 gene at Home site.
    hostname: 356977-web1.xennexinc.com index build: 100 solr: 1.4